Three decades of longlining in Bimini,Bahamas, reveals long‐term trends in lemon shark Negaprion brevirostris (Carcharhinidae) catch per unit effort

In Bimini, Bahamas, the consistent employment of longlines, beginning in 1982, provided a rare opportunity to explore population trends for large resident sharks. This study assessed three shallow water longline survey periods at this location; 1982–1989, 1992–2002 and 2003–2014, with the aim of determining trends in annual catch per unit effort (CPUE) for an IUCN listed near‐threatened species, the lemon shark Negaprion brevirostris. A general additive model (GAM) was used to analyse the non‐linear annual CPUE values over the entire 32‐year research period. The GAM displayed high variability of annual CPUE, with a peak value of 0·026 N. brevirostris per hook day (hooks day^?1) in 2000. The temporal pattern of CPUE indicated an abundance trend with a complete cycle, from trough to trough, occurring over a period of approximately 18 years. The 1982–1989 survey period saw the highest proportion of mature individuals (19·8%) and the smallest average pre‐caudal length (L_PC; 124·8 cm). The 1992–2002 survey period had the highest average annual CPUE (0·018 hooks day^?1), while the 2003–2014 research period saw largest average L_PC size (134·8 cm) and the lowest average CPUE values (0·009 hooks day^?1) of the entire research period. The long‐term trend identified in this study provides a baseline for future assessment.     

Using the robust design framework and relative abundance to predict the population size of pallid sturgeon Scaphirhynchus albus in the lower Missouri River

Several population viability models were constructed to aid recovery in endangered Scaphirhynchus albus, but these models are dependent upon accurate and precise input parameters that are not provided with standard catch per unit effort (CPUE) indices. Nine years of sampling efforts, under the robust design framework, provided 1223 unique captures with an 18·3% recapture rate. The annual population estimates varied from 4·0–7·3 fish rkm^?1 for wild and 8·4–18·4 fish rkm^?1 for hatchery‐reared S. albus. The relationship between abundance (N) and annual trot‐line CPUE indices (x = 70.726y + 2·533, R² = 0·91, P < 0·001) was used to predict an abundance of 13 616 ± 7142 s.e. S. albus in the lower Missouri River. The use of small‐scale intensive sampling to develop a relationship with relative abundance indices reported here, may provide a framework for other fisheries management applications where large‐scale intensive sampling is not feasible, but catch data are available.     

Within‐lake distribution patterns of fish assemblages: the relative roles of spatial,temporal and random environmental factors in assessing fish assemblages using gillnets in a large and shallow temperate lake

In this study, the relative role of spatio‐temporal factors and associated environmental variables (water transparency and temperature) were quantified in relation to gillnet samples of fishes in a large and shallow lake (Lake Balaton, Hungary). Most of the variance (56·1%) in the relative abundance data (%) was related to the vertical segregation of fishes. This gradient substantially affected the catch per unit effort (CPUE) by number of the dominant species, the surface‐oriented bleak Alburnus alburnus and the benthic common bream Abramis brama. It also influenced total CPUE, mean fish mass and species richness and diversity. At the lake level, horizontal habitat heterogeneity (i.e. littoral v. offshore) accounted for only 8·3% of the total variance in relative abundance data, but was important in structuring the CPUE of the ruffe Gymnocephalus cernua and the pikeperch Sander lucioperca. The longitudinal environmental gradient (i.e. lake basin), year and season of sampling, water transparency and temperature had significant effects on relative abundance only at the habitat level, but were also important components of variability of CPUE in some species at the lake level. As sampling schemes need to consider the main gradients in fish assemblage distributions, the use of surface and pelagic gillnets should be more intensively incorporated in the study and monitoring of fish assemblages in shallow lakes and lake habitats.     

Effects of sampling techniques on population assessment of invasive round goby Neogobius melanostomus

In this study, a comparison of point abundance sampling (PAS) electrofishing, angling with two different hook sizes and trap‐based fishing was performed in a non‐wadeable river to analyse their effects on catch per unit effort (CPUE) and population characteristics of invasive round goby Neogobius melanostomus. PAS electrofishing was identified as the most effective (mean ± s.e . CPUE = 57 ± 4 N. melanostomus min^?1) and least selective method in terms of size, feeding status and species composition. Angling had the second highest CPUE, but was more size selective and resulted in a higher proportion of males compared to electrofishing [overall sex ratio angling (female:male) = 1:0·92, electrofishing 1:0·65]. Owing to low CPUE (0·012 ± 0·004) and low frequency of occurrence, minnow traps were least suitable for N. melanostomus population assessment. The results of this study suggest that a higher degree of standardization and inter‐calibration is useful to achieve better comparability of population data of invasive N. melanostomus and other benthic fish species.     

Regionalizing Nutrient Values of Vegetation to Assess Site Fertility of Mountain Forests in the Bavarian Alps

Height growth and productivity of forests depend on temperature, water and nutrients. Ellenberg indicator values that summarize vegetation response to growth factors are suited to predict site fertility. Macronutrients (NPK), as represented by N-values, are a crucial component of site fertility and susceptibility towards biomass extraction. Based on 1,500 vegetation plots from an inventory stratified over all important forest types of the Bavarian Alps we regionalized Ellenberg N-values against area-wide soil, climate and relief predictors including a spatial effect at a scale of 1 : 25,000, resulting in a general additive model (GAM) with eight predictors and an explained deviance of 53 % on test data. The N-value layer was combined with other regionalized indicator values (temperature, reaction, moisture) to predict height of Norway spruce at reference age (site index) of an independent forest inventory data set, resulting in a GAM with an explained deviance of 35 %. After temperature the nutrient value was the second most important predictor of site index and clearly superior to soil reaction. It can be concluded that forest growth is sensitive to reductions of NPK-availability through whole tree harvesting and that maps of N-values deliver important information for planning sustainable harvesting.     

Comparison of electrofishing and trammel netting variability for sampling native fishes

The variability in size structure and relative abundance (CPUE; number of fish ≥200 mm total length, L_T, collected per hour of electrofishing or trammel netting) of three native Colorado River fishes, the endangered humpback chub Gila cypha, flannelmouth sucker Catostomus latipinnus and bluehead sucker Catostomus discobolus, collected from electrofishing and trammel nets was assessed to determine which gear was most appropriate to detect trends in relative abundance of adult fishes. Coefficient of variation (CV) of CPUE ranged from 210 to 566 for electrofishing and 128 to 575 for trammel netting, depending on season, diel period and species. Mean CV was lowest for trammel nets for humpback chub (P = 0·004) and tended to be lower for flannelmouth sucker (P = 0·12), regardless of season or diel period. Only one bluehead sucker >200 mm was collected with electrofishing. Electrofishing and trammel netting CPUE were not related for humpback chub (r = ?0·32, P = 0·43) or flannelmouth sucker (r = ?0·27, P = 0·46) in samples from the same date, location and hour set. Electrofishing collected a higher proportion of smaller (<200 mm L_T) humpback chub (P < 0·001), flannelmouth suckers (P < 0·001) and bluehead suckers (P < 0·001) than trammel netting, suggesting that conclusions derived from one gear may not be the same as from the other gear. This is probably because these gears fished different habitats, which are occupied by different fish life stages. To detect a 25% change in CPUE at a power of 0·9, at least 473 trammel net sets or 1918 electrofishing samples would be needed in this 8 km reach. This unattainable amount of samples for both trammel netting and electrofishing indicates that detecting annual changes in CPUE may not be practical and analysis of long‐term data or stock assessment models using mark‐recapture methods may be needed to assess trends in abundance of Colorado River native fishes, and probably other rare fishes as well.     

Vulnerability to longline fisheries of three hammerhead shark Sphyrna species in the south‐western and equatorial Atlantic Ocean

Catch and effort data from 29 418 longline sets from Brazilian tuna longline vessels operating in the south‐western and equatorial Atlantic Ocean between 2004 and 2011 were analysed to investigate the distribution, catch rate and size of three species of hammerhead sharks (Sphyrna lewini, Sphyrna mokarran and Sphyrna zygaena). During that period, 6172 hammerhead sharks were caught. Among the elasmobranchs, the highest percentage of hammerhead sharks were caught in 2007, when they accounted for 3·90% of the group, while the lowest value of 0·40% was recorded in 2010. In general, the spatial distribution of the mean catch per unit effort (CPUE) by years and quarters showed a trend of higher catches near the equatorial region and in southern Brazil. The nominal mean CPUE was 0·12 Sphyrna spp. 1000⁻¹ hooks, with the highest value being recorded in 2007 (0·30 Sphyrna spp. 1000⁻¹ hooks). The standardized yearly CPUE estimated by a generalized linear model assuming a zero inflated negative binomial (ZINB) distribution were not much different from nominal values. Of the 205 sexed specimens, 117 were females and 88 were males, resulting in a sex ratio with a predominance of females (1·30:1·00), although not statistically significant. The total length of females ranged from 1200 to 2800 mm and of males from 1100 to 3100 mm. Juvenile hammerhead sharks represented 82 and 54% of the sexed female and male specimens, respectively.     

The effects of productivity and seasonality on life history: comparing age at maturity among moose (Alces alces) populations

The productivity hypothesis in respect of an animal species’ geographical range predicts that whereas higher productivity at the equatorial periphery of a species’ range favours superior competitors, lower productivity at the centre of a species’ range favours high reproduction and reduced competitive traits. I test whether life‐history patterns follow this hypothesis, using demographic data from 15 Canadian moose (Alces alces) populations. Two models are contrasted; the first assumes that intraspecific variation in age at maturity is explained proximately by density and juvenile mortality. Age at maturity was found to increase with decreasing juvenile mortality (P = 0.01) and increasing density (P = 0.006). To test the productivity hypothesis, the second model additionally included primary productivity and seasonality as geographical explanatory variables that would ultimately influence age at maturity via juvenile mortality and density. Path analysis indicated that including productivity and seasonality improved the model predictions of variation in age at maturity (R_a² 0.56 and 0.85). In bivariate comparisons, seasonality was negatively associated (P = 0.01) with age at maturity. In the best model, however, primary productivity was the environmental variable that explained 25% of the variance in age at maturity, and forest cover replaced seasonality as an explanatory variable. The positive association between primary productivity and age at maturity is consistent with the productivity hypothesis. Relative to populations that lived at the centre of the species’ range (51°N), moose populations living in relatively high productivity and low seasonality environments (equatorial periphery of species’ range; 48°N) experienced less juvenile mortality, more variable year‐to‐year density, higher relative density and slower life history (slower growth rate, later age at maturity, lower fecundity).     

Distribution and feeding habitat characterization of whale sharks Rhincodon typus in a protected area in the north Caribbean Sea

The relationship between the distribution of the whale shark Rhincodon typus and hydrobiological variables in the Caribbean Sea during 2005–2009 was analysed. Monthly trips were made to the R. typus aggregation area during the months when this species is present in the region (May to September) to record sightings and hydrological data and to collect samples to determine nutrients, chlorophyll a (Chl a) and zooplankton biomass. A total of 2104 R. typus were counted and three zones of high abundance were identified: Cabo‐Catoche, Contoy (both within the Whale Shark Biosphere Reserve, WSBR) and the zone knows as Afuera. The zones of greatest R. typus density within the WSBR were characterized by high Chl a concentrations (median: 1·1 mg m^?3, interpercentile range: 0·5–1·8 mg m^?3) and high nutrient concentrations, such as ammonium (median: 2·5 µmol l^?1, interpercentile range: 0·5–6·4 µmol l^?1), due to the influence of local upwelling. A generalized additive model (GAM) was used to explore the relationship between R. typus distribution and the environmental variables inside WSBR. Zooplankton biomass was the most influential environmental variable, supporting the close relationship between R. typus distribution and biological productivity. Copepods were the dominant zooplankton group within the WSBR. In the Afuera zone, there were large R. typus aggregations (>80 individuals) associated with zooplankton dominated by fish eggs and significantly higher mean ± s.d. biomass (3356·1 ± 1960·8 mg m^?3) compared with that recorded inside the WSBR (103·5 ± 57·2 mg m^?3). The differences among zones generated changes in R. typus distribution patterns and provided opportunities to develop local management strategies for this species.     

基于广义可加模型的时空和环境因子对东南太平洋智利竹筴鱼渔场的影响

根据2001-2007年我国渔船在东南太平洋海域的智利竹筴鱼生产统计数据、时空因子以及海表温度、叶绿素浓度、海表温度梯度等环境数据,利用广义可加模型（GAM）分析了智利竹筴鱼资源变动情况及其与时空和环境因子的关系.结果表明：GAM模型对单位捕捞努力量渔获量(catch per unit effort,CPUE)总偏差解释率为31.47%;竹筴鱼生产具有明显的季节变化,主要集中在第17～41周,其中第25～31周的CPUE较高;东南太平洋智利竹筴鱼作业渔场集中在78°-98° W,30°-435° S之间,适宜海表温度为12 ℃～18 ℃,14 ℃～16 ℃最适宜,适宜叶绿素浓度在0.09～0.18 mg·m^-3,海表温度梯度在0.3 ℃～1.9 ℃.逐步建模法结果表明,影响竹筴鱼资源丰度的因子按重要性从大到小依次为周次、年份、海表温度、经度、纬度、叶绿素浓度和海表温度梯度.     

Changes in growth and maturation parameters of Pacific sardine Sardinops sagax collected off California during a period of stock recovery from 1994 to 2010

Whether fluctuation in density influenced the growth and maturation variables of three aggregated cohorts (fish born during the 1986–1993, 1996–2003 and 2004–2008 periods) of Pacific sardine Sardinops sagax caeruleus collected off the Californian coast from 2004 to 2010 was investigated. Using a von Bertalanffy mixed‐effects model with aggregated cohorts as covariates, estimated growth rate significantly covaried with aggregated cohorts. Growth rate (K) was modelled as a fixed effect and estimated to be 0·264 ± 0·015 (±s.e ). Statistical contrasts among aggregated cohorts showed that the 1996–2003 cohorts had a significantly lower growth rate than the other two aggregated cohorts. The theoretical age at length zero (t₀) and the standard length at infinity (L_S∞) were modelled as random effects, and were estimated to be ?2·885 ± 0·259 (±s.e ) and 273·13 ± 6·533 mm (±s.e ). The relation of ovary‐free mass at length was significantly different among the three aggregated cohorts, with the allometric coefficient estimated to be 2·850 ± 0·013 (±s.e ) for the S. sagax population. The age‐at‐length trajectory of S. sagax born between 1986 and 2008 showed strong density dependence effects on somatic growth rates. In contrast to the density‐dependent nature of growth, the probability to be mature at‐size or at‐age was not significantly affected by aggregated cohort density. The size and the age‐at‐50% maturity were estimated to be 150·92 mm and 0·56 years, respectively. Stock migration, natural fluctuations in biomass and removal of older and larger S. sagax by fishing might have been interplaying factors controlling growth parameters during 1986–2010.     

Modelling catch per unit effort of the Black Volta near the Bui dam in Ghana

The chlorophyll a concentration and water level of the Black Volta near the Bui dam were studied in relation to fish production as measured by catch per unit effort (CPUE) between February 2011 and December 2012. The primary objective was to develop a simple linear regression model for predicting CPUE levels. The mean estimated CPUE for 2011 and 2012 was lower (6.23 kg canoe^?1 day^?1) in the postwet season than in the dry season (10.86 kg canoe^?1 day^?1) with a mean of 7.95 kg canoe^?1 day^?1. Hence, the dry season was the most important season for fish catches in the study area. Predictor variables that significantly explained CPUE levels were chlorophyll a (positive correlation) and water level (negative correlation) (P = 0.0002). The model was validated with independent data from the same Black Volta in 2011 and 2012. This model, CPUE = (0.062 × chlorophyll a) ? (0.456 × water level) + 3.363, explained 91% CPUE variability. Independent validation indicated that the model had the potential to predict CPUE (as a measure of fish production) in the Black Volta near the Bui dam. Hence, the model is also a valuable tool to predict future trends in the CPUE levels of the Black Volta.     

Spatial and environmental determinants of the distribution of Striped Marlin (Kajikia audax) in the western and central North Pacific Ocean

Striped Marlin is a highly migratory species distributed throughout tropical and temperate waters in the North Pacific Ocean. The habitat characteristics of Striped Marlin in the western and central North Pacific Ocean were examined using generalized additive models by modelling fishery catch-rates as a function of remotely-sensed environmental covariates, including sea surface temperature (SST), chlorophyll-a concentration (CHL), mixed layer depth (MLD) and sea height anomalies (SHA). SST explained the largest proportion of the deviance, and is therefore considered the best predictor for the habitat of Striped Marlin. Spatial distributions of the relative density of Striped Marlin indicated that there is a seasonal north–south migration, and that the highest densities occur in the central North Pacific Ocean. The preferred habitat characteristics of Striped Marlin in high density areas were identified as SST between 23 and 26 °C, MLD within 30 m depth, and CHL around 0.08 mg m^?3, while no preferred range was found for SHA. The results of this study could improve our understanding of Striped Marlin spatial distributions and habitat characteristics.     

Environmental factors regulate the effects of roach Rutilus rutilus and pike Esox lucius on perch Perca fluviatilis populations in small boreal forest lakes

In this study of 18 small boreal forest lakes, the effects of abiotic and biotic factors (roach Rutilus rutilus and pike Esox lucius) on various population variables of perch Perca fluviatilis were examined. As a single variable, the gillnet catch per unit effort (CPUE) of R. rutilus was negatively related to the mean mass of small (< 200 mm) and the growth rate of young (1–2 years) P. fluviatilis. The mean mass of large (≥ 200 mm) P. fluviatilis was the highest at intermediate CPUE of R. rutilus. Redundancy analysis including environmental factors and P. fluviatilis population variables suggested that ‘predation–productivity–humus' gradient affected P. fluviatilis populations by decreasing the CPUE and mean mass of small individuals but increasing these variables of large individuals. The CPUE of R. rutilus and lake area had a negative effect on small and a positive effect on large P. fluviatilis growth rate. In small boreal forest lakes, P. fluviatilis populations are affected by the partially opposite forces of competition by R. rutilus and predation by E. lucius, and the intensity of these interactions is regulated by several environmental factors.     

Enhancement of docosahexaenoic acid production by Schizochytrium sp. using a two-stage oxygen supply control strategy based on oxygen transfer coefficient

Aims: To improve the yield and productivity of docosahexaenoic acid (DHA) by Schizochytrium sp. in terms of the analysis of microbial physiology. Methods and Results: A two‐stage oxygen supply control strategy, aimed at achieving high concentration and high productivity of DHA, was proposed. At the first 40 h, K_La was controlled at 150·1 h^?1 to obtain high μ for cell growth, subsequently K_La was controlled at 88·5 h^?1 to maintain high q_p for high DHA accumulation. Finally, the maximum lipid, DHA content and DHA productivity reached 46·6, 17·7 g l^?1 and 111 mg l^?1 h^?1, which were 43·83%, 63·88% and 32·14% over the best results controlled by constant K_La. Conclusions: This paper described a two‐stage oxygen supply control strategy based on the kinetic analysis for efficient DHA fermentation by Schizochytrium sp. Significance and Impact of the study: This study showed the advantage of two‐stage control strategy in terms of microbial physiology. As K_La is a scaling‐up parameter, the idea developed in this paper could be scaled‐up to industrial process and applied to other industrial biotechnological processes to achieve both high product concentration and high productivity.     

Effect of incubation temperature on muscle growth of barramundi Lates calcarifer at hatch and post-exogenous feeding

Muscle morphology was investigated in newly hatched barramundi Lates calcarifer larvae incubated at set temperatures (26, 29 and 31° C) prior to hatching. Three days after hatching (the start of exogenous feeding), larvae from the 26 and 31° C treatments were each divided into two groups and reared at that temperature or transferred over the period of several hours to 29° C (control temperature). Incubation temperature significantly affected muscle cellularity in the developing embryo, with larvae incubated at 26° C (mean ±s .e . 223·3 ± 7·9) having on average 14·4% more inner muscle fibres than those incubated at 31° C (195·2 ± 8·8) and 4·8% more than those incubated at 29° C (213·5 ± 4·7). Conversely, inner muscle fibre cross‐sectional area significantly increased at the warm incubation temperature in L. calcarifer, so that the total cross‐sectional muscle area was not different between treatment groups. The total cross‐sectional area of superficial muscle fibres and the proportion of superficial to total fibre cross‐sectional area in just hatched L. calcarifer were also affected by incubation temperature, with incubation at the cool temperature (26° C) increasing both the total cross‐sectional area and proportion of superficial muscle fibres. By 9 days post‐hatch, the aforementioned differences were no longer significant. Similarly, there was no difference in total superficial fibre cross‐sectional area between any treatment groups of L. calcarifer, whereas incubation temperature still significantly affected the proportion of superficial to total muscle fibre cross‐sectional area. Larvae hatched and grown at 31° C had a significantly reduced percentage of superficial muscle cross‐sectional area (mean ±s .e . 5·11 ± 0·66%) compared with those incubated and grown at 29° C (8·04 ± 0·77%) and 26° C (9·32 ± 0·56%) and those incubated at 26° C and transferred to 29° C (7·52 ± 0·53%), and incubated at 31° C and transferred to 29° C (6·28 ± 0·69%). These results indicate that changes in muscle cellularity induced by raising or lowering the incubation temperature of L. calcarifer display varying degrees of persistence over developmental time. The significance of these findings to the culture of L. calcarifer is discussed.     

Habitat associations,reproduction and diet of the Guinean tilapia Tilapia guineensis of the Gambia River floodplains

The ecology of the Guinean tilapia Tilapia guineensis a dominant species of the lower Gambia River floodplains and an important food source in parts of West Africa was studied to better understand the threat posed from construction of a barrage across the river. The catch per unit effort (CPUE) of T. guineensis was positively associated with conductivity and dissolved oxygen and negatively associated with water depth and the % vegetation cover. Diet studies indicated that the T. guineensis is primarily an iliophage. The peak of reproduction was at the beginning of the rainy season. CPUE peaked in May, just before the first rains, and subsequently declined, probably reflecting movement into newly flooded habitat. Median size at maturity was 11·6 cm total length, L_T, for females and 12·5 cm L_T for males. L_T‐frequency analysis indicated several juvenile cohorts as well as very young fish on the floodplains each month, suggesting continuation of reproduction throughout the rainy season. The impending construction of a hydroelectric dam on the Gambia River is likely to affect T. guineensis negatively through anticipated changes in the hydrology of the river.     

Short‐term growth response of jack pine and spruce spp. to wood ash amendment across Canada

Wood ash amendment to forest soils contributes to the sustainability of the growing bioenergy industry, not only through decreased wood ash waste disposal in landfills but also by increasing soil/site productivity and tree growth. However, tree growth studies to date have reported variable responses to wood ash, highlighting the need to identify proper application rates under various soil/site conditions to maximize their benefits. We explored the influence of tree species, wood ash nutrient application rates, time since application, stand development stage, and initial (i.e., before wood ash application) soil pH and N on short‐term tree growth response to wood ash amendment across eight unique study sites spanning five Canadian Provinces. Jack pine (Pinus banksiana Lamb) had the most positive response to wood ash amendment compared to white (Picea glauca Moench), hybrid (Picea engelmannii x glauca Parry), and black spruce (Picea mariana Miller), where increasing nutrient application rates increased height growth response. In comparison, black spruce had the most negative response to wood ash amendment, where increasing nutrient application rates slightly decreased height growth response. Site as a random effect explained additional variation, highlighting the importance of other unidentified site characteristics. By examining trends in short‐term growth response across multiple studies with variable site characteristics, we found growth response differed by tree species and nutrient application rates, and that jack pine is a promising candidate for wood ash amendment. These results contribute to our knowledge of optimal wood ash amendment practices and environmentally sustainable bioenergy production.