The molecular characterization of the genome of Muraena helena L. I. Isolation and hybridization of two MboI-restricted DNA fractions.

To investigate the genome of the anguilliform fish Muraena helena at the molecular level we characterized total DNA by agarose gel electrophoresis after cleavage with AluI, HaeIII, MboI, and DdeI restriction endonucleases. Subsequently, we isolated the DNA from two specific electrophoretic fractions to be used as probes for Southern and in situ hybridization experiments. One such fraction showed an electrophoretic pattern typical of highly repetitive DNA localized in the centromeres of many chromosomes. The other fraction was shown to be located in the nucleolar organizer region, partially coincident with 45S rDNA, and to be composed of highly repetitive sequences.     

Demographic structure and distribution of John Dory, Zeus faber L. 1758, in the Adriatic Sea

Recent demographic structure and distribution of the fish species Zeus faber in the Adriatic Sea were investigated in this study and compared with a 1948–1949 study. The presence of John Dory in the Adriatic Sea was recorded at a depth range from 21 to 239 m, with the highest biomass indices at depths between 50 and 100 m. The length frequency distribution, length–weight relationships, sex ratio and length at first sexual maturity were determined. Results based on data from the 1948–1949 ‘Hvar’ expedition and the MEDITS surveys of 1996–1998 showed in the 50‐year interval that the index of biomass and area of distribution of this species in the Adriatic Sea have been reduced and that the demographic structure of the population has changed. Negative changes described in the paper indicate an overfishing of the Z. faber species in the Adriatic Sea.     

Diet composition of bluefin tuna (Thunnus thynnus L. 1758) in the Eastern Mediterranean Sea,Turkey

This study gives relevant information on the diet composition of the bluefin tuna (Thunnus thynnus) during the spawning period in the eastern Mediterranean Sea. The stomach contents of 218 bluefin tuna were sampled from 2003 to 2006 during the fishing season (May–June) aboard purse seiners operating in the northern Levantine Sea off the coast of Turkey. Stomachs were removed from the fish soon after landing and kept frozen at ?18°C until analysis. Prey items were classified into large taxonomic categories and preserved in 70% ethanol. A total of 745 different prey specimens belonging to 47 taxa were identified, including 34 species of fish, 11 of squid, and two of crustaceans. The most important fish and cephalopod prey belonged to the families Myctophidae, Carangidae, Chauliodontidae, Paralepididae, and Octopoda. This study marks the observation of myctophid fish in the stomach contents of bluefin tuna from the Mediterranean Sea. The paper offers some new information of regional importance and compares the feeding habits of the species to other regions, bringing confirmation on the opportunistic feeding ecology of the species in the enclosed Mediterranean Sea, where bluefin tuna seasonally occur as a strong cohort. New information on the diet composition of T. thynnus in the eastern Mediterranean Sea is revealed; the findings indicate that, depending on the abundance of the different prey species in the habitat, the dominant prey species can be distinctive.     

Energy density of anchovy Engraulis encrasicolus L. in the Adriatic Sea

European anchovy Engraulis encrasicolus , with total lengths ranging from 40·0 to 132·5 mm, were sampled during October 2002 and May 2003 in the northern Adriatic Sea in order to estimate their energy densities ( E _D). A highly significant ( P  < 0·001) relationship between E _D(y)(J g⁻¹wet mass) and per cent dry mass ( x ) was found: y  = 321 x  − 3316·9 ( n  = 161, r ² = 0·82).     

Age related properties of the Adriatic clam Chamelea gallina (L. 1758) hemocytes

The clam Chamelea gallina (L 1758) represents an important shellfish resource along Mediterranean coasts and its progressive depletion has been ascribed both to the overexploitation of stocks and to environmental or anthropic stressors. In this context, the investigation on immune parameters could represent a valid approach to measure the clam homeostasis condition and its possible influence on population dynamics. On this basis, the innate immune system, mainly represented by hemocyte phagocytosis, was investigated in organisms of different size. The results indicated a better phagocytic response in larger clams, strictly related to a greater concentration of granulocytes. A such variation in hemolymph composition appeared not dependent on environmental or endogenous factors, but rather on clam aging.     

Feeding habits of horse mackerel, Trachurus trachurus (Linneaus, 1758), from the central Adriatic Sea

The feeding habits of the horse mackerel, Trachurus trachurus, from the central Adriatic Sea were investigated with respect to fish size and season. Stomach contents of 1200 specimens 12.9–37.6 cm total length (TL) taken at monthly intervals (January–December 1995) were analyzed. Of the total number of stomachs examined, 597 were empty (49.7%). This percentage varied significantly with season; the maximum number of empty stomachs was observed during January (80%) and February (82%) and a minimum number observed during July (15%) and August (19%). A total of 30 different prey species belonging to five major groups: Crustacea (Euphausiacea, Mysidacea, Decapoda), Cephalopoda, and Teleostei was identified in the stomach contents. Euphausiids were the most important ingested prey in all seasons as well as in small‐ and medium‐size classes (<28 cm TL). Two species of euphausiids, Nyctiphanes couchii (%IRI = 36.0) and Euphausia krohni (%IRI = 12.9), were the most frequent prey. The proportion of teleosts in stomach contents increased with the increasing size class of horse mackerel and was 15.5% IRI in >30 cm TL individuals. The mean weight of stomach contents increased significantly for fish larger than 24.1 cm TL, while the mean number of prey items significantly declined in the large‐size classes.     

Biology of the salema, Sarpa salpa (L. 1758) (Pisces, Sparidae) from the middle-eastern Adriatic

Salema Sarpa salpa (Linnaeus, 1758), were caught in the middle-eastern Adriatic Sea from August to November 2004. Length range of the samples was between 10.3 and 43.9 cm, with mean values of 25.5 cm in males, 32.6 cm in females, and 11.4 and 20.2cm in immature and hermaphrodite specimens, respectively. Sex ratio (males : females) was 3.1 : 1. Males were observed up to 37 cm length. Hermaphrodites showed lengths between 18 and 21 cm. The species was characterized by protandric hermaphroditism. Size at sexual maturity was 20.6 cm (2 years old) for males. Total length-total weight relationship for the entire population is described by the parameters a  = 0.00893, and b  = 3.1055. Otolith age readings showed that the population consisted of 15 age groups (1–15 years), including a very high proportion of individuals 1–7 years old. The von Bertalanffy growth parameters were L _∞ = 33.11cm, k  = 0.514, and t ₀ = −0.392 years for males and L _∞ = 40.85cm, k  = 0.179, and t ₀ = −2.606 years for females. Survival rate of females ( S  = 0.870) was much greater than for males ( S  = 0.769).     

The fin whale Balaenoptera physalus (L. 1758) in the Mediterranean Sea

1. The ecology and status of fin whales Balaenoptera physalus in the Mediterranean Sea is reviewed. The species’ presence, morphology, distribution, movements, population structure, ecology and behaviour in this semi‐enclosed marine region are summarized, and the review is complemented with original, previously unpublished data. 2. Although the total size of the fin whale population in the Mediterranean is unknown, an estimate for a portion of the western basin, where most of the whales are known to live, was approximately 3500 individuals. High whale densities, comparable to those found in rich oceanic habitats, were found in well‐defined areas of high productivity. Most whales concentrate in the Ligurian‐Corsican‐Provençal Basin, where their presence is particularly noticeable during summer; however, neither their movement patterns throughout the region nor their seasonal cycle are clear. 3. Based on genetic studies, fin whales from the Mediterranean Sea are distinct from North Atlantic conspecifics, and may constitute a resident population, separate from those of the North Atlantic, despite the species’ historical presence in the Strait of Gibraltar. Fin whales are known to calve in the Mediterranean, with births peaking in November but occurring at lower rates throughout the year. They feed primarily on krill Meganyctiphanes norvegica which they capture by diving to depths in excess of 470 m. It is suggested that the extensive vertical migratory behaviour of its main prey may have influenced the social ecology of this population. 4. Known causes of mortality and threats, including collisions with vessels, entanglement in fishing gear, deliberate killing, disturbance, pollution and disease, are listed and discussed in view of the implementation of appropriate conservation measures to ensure the species’ survival in the region.     

Diet composition of young-of-the-year saddled bream, Oblada melanura (Linnaeus, 1758) from the eastern central Adriatic Sea

Stomach contents of 144 specimens of Oblada melanura were analyzed for diet composition. All specimens belonged to the 1‐year age group. Material was collected from the localities of Kornati Archipelago and Murter Island in the eastern central Adriatic during 1992–1993. Copepod crustaceans were the main food, while Cladocera crustaceans were the second most important. Feeding intensity was very high as indicated by high stomach fullness index and low vacuity index.     

The reproductive traits of Scomber japonicus (Houttuyn, 1782) in the Eastern Adriatic Sea

The aim of the present study was to investigate the fisheries biology of Scomber japonicus (Houttuyn, 1782) in the Adriatic Sea, to enable implementation of appropriate regulatory measures for fisheries. Reproductive biology and sexual patterns of S. japonicus (chub mackerel) were examined from monthly random samples of commercial catches from purse seine nets (10 mm stretched mesh size) in the eastern Adriatic Sea. The annual mean chub mackerel fork length (FL) was examined from 1998 to 2007. Average fork lengths were approximately 25 cm between 1998 and 2002, decreasing to 22 cm between 2003 and 2007. In addition, sex ratios fluctuated as a function of size and month: females were more abundant in the smaller length classes, as well as before and after spawning; males were more abundant in the larger length classes and during spawning. The overall sex ratio was 0.68; females were significantly predominant. 50% of the chub mackerel population was sexually mature at a FL of 18.3 cm, and both males and females reached sexual maturity at FLs of 20.4 cm and 16.8 cm, respectively. Based on gonad maturity stages, gonad weight and gonadosomatic index, chub mackerel spawned from May to August, with peak spawning in June for both sexes. The mean absolute fecundity was 181 277 ± 62 090 oocytes per ovary. A positive exponential correlation was found between fecundity and fork length, gonad weight, and total chub mackerel weight (r² = 0.640; r² = 0.686 and r² = 0.607, respectively).     

Organochlorine pesticides in chorioallantoic membranes of Morelet's crocodile eggs from belize

Recent studies examined the utility of the chorioallantoic membrane (CAM) as a nonlethal, noninvasive indicator of environmental contaminant exposure in oviparous wildlife. The CAM is a highly vascularized extraembryonic membrane that functions as a site for respiration, nutrient transport, and waste storage during embryonic development. After hatching, the CAM is usually discarded with the eggshell and can be used for chemical residue analysis. Chorioallantoic membranes have been used successfully to examine contaminant exposure and predict chemical concentrations in multiple species of birds and reptiles. In this study, we examined organochlorine (OC) pesticide concentrations in CAMs from eggs of Morelet's crocodiles (Crocodylus moreletii) from northern Belize. Multiple OCs were detected in crocodile CAMs, including aldrin, dieldrin, endrin, dichlorodiphenyltrichloroethane, dichlorodiphenyldichloroethane, dichlorodiphenyldichloroethylene (DDE), heptachlor, lindane, and methoxychlor. Number and concentrations of OC compounds in CAMs were variable. The most prevalent contaminant detected was DDE, which occurred in 69% of CAMs, with concentrations ranging from 0.3 parts per billion (ppb) to 17.0 ppb. The OC burdens in crocodile CAMs confirm contamination of eggs and suggest exposure in embryos and maternal females. These results further support the use of CAMs as qualitative indicators of OC exposure in oviparous wildlife. The efficacy of this sampling technique in the field will depend on the logistics and cost associated with CAM collection and the specific life history traits of the wildlife species.     

Size and age at sexual maturity of female bluefin tuna (Thunnus thynnus L. 1758) from the Mediterranean Sea

The ovaries of 501 female eastern Atlantic bluefin tuna (Thunnus thynnus Linnaeus, 1758) captured in the Mediterranean Sea from May to September between 1998 and 2004 were analysed histologically. Body size at median sexual maturity (L₅₀) was 103.6 cm fork length (FL), while 100% maturity was reached above 135 cm FL. The age analysis, based on the count of the translucent zones of the first spiniform ray of the first dorsal fin, showed that most of the specimens with FL = L₅₀ were 3 years old while 100% maturity was reached between 4 to 5 years. The reported evidence indicates that for the eastern Atlantic bluefin tuna stock, the size and age of first sexual maturity of females was lower than in the western Atlantic stock.     

Organochlorine pesticides in Cyprinus carpio from Sidi Salem Dam,north-western Tunisia

Cyprinus carpio (Linnaeus, 1758) caught in Sidi Salem Dam in 2011 were analysed for the levels of organochlorine pesticides (OCPs), including hexachlorobenzene (HCB), aldrin, heptachlor, lindane, dieldrin, endrin, and pp′-DDT and its two main metabolites pp′-DDD and pp′-DDE, in order to evaluate the extent of contamination of the dam. Fish were sampled monthly within the dam during 2011. Muscle, liver and gill tissues were analysed by gas chromatography for the determination of OCPs. Samples had variable concentrations of OCPs, ranging from 2.26 to 17.93 ng g?1, 0.59 to 42.67 ng g?1 and 3.30 to 84.27 ng g?1, which were isolated from gills, muscle and liver, respectively. The organochlorine pesticide levels found posed no threat to human health. The highest OCP levels were found in the liver tissues. The pp′-DDE concentrations and their ratios to ΣDDTs indicate aged DDT pollution and suggests that there has been no recent input of technical DDT from the agricultural areas into Sidi Salem Dam.     

Age- and tissue-dependent metallothionein and cytosolic metal distribution in a native Mediterranean fish, Mullus barbatus, from the Eastern Adriatic Sea

The levels of metallothionein (MT), a biomarker of metal exposure, and of cytosolic metals (Zn, Cu, Cd), known as MT inducers, were investigated as variables of age (1 to 8 years) and tissue mass (liver, kidney, brain) of red mullet (Mullus barbatus). Within the age from 1 to 8 years the most significant increase is evident for cytosolic Cd in liver (43-fold) and in kidney (5-fold). MT and essential metals are constant with age or slightly increased. Over the growth period, statistically significant MT and metal increase is evident only between 1 and 6-8 years old specimens, while for Cd in liver and kidney cytosol significant increase already exists at 4 years old specimens. Metal distribution in all tissues follows the order: Zn>Cu>Cd, with even 500-800 times lower Cd levels than essential metal levels. Consequently, MTs follow the levels of essential metals, Zn and Cu, indicating MT involvement in homeostasis of essential metals. In contrast to kidney and brain, hepatic MT levels are not age-dependent. Inclusion of hepatic MT measurements and the associated cytosolic metals will be useful in the assessment of long-term metal effects in demersal fish M. barbatus.     

Colour polymorphism and genetic variation in Idotea baltica populations from the Adriatic Sea and Baltic Sea

Phenotypic and genetic variation was studied in two of the four European subspecies of the marine isopod Idotea baltica; the Mediterranean I. b. basteri and the Baltic I. b. baltica. Spatial and temporal patterns of colour polymorphism were analysed in northern Adriatic and western Baltic Sea populations. Pronounced differences in phenotype composition were observed between populations of both subspecies as seen in the distribution of various colour variants bilineata, lineata, flavafusca and several combined forms). Compared with Adriatic samples, western Baltic Sea populations show higher phenotypic diversity. To obtain an estimate of the degree of genetic divergence between the subspecies, 12 gene-enzyme systems were investigated electrophoretically. The results obtained indicate a relatively high level of genetic variation; I. b. basteri from the nothern Adriatic tends to be more polymorphic and more heterozygous than I. b. baltica from the western Baltic. Both subspecies share identical electrophoretic mobilities of the homologous enzyme proteins examined; however, in allelic composition they exhibit significant differences at approximately half the number of loci scored. The genetic distance (Nei's D) measured at the subspecific level was 0.04. Amounts and geographical patterns of variation, observed both in colour phenotype and electrophoretic variation, are considered.     

The effects of northern italian rivers and Eastern Mediterranean ingressions on the phytoplankton of the Adriatic Sea

An analysis of the distribution of the phytoplankton standing crop during a period of high stability characterized the relative influence of northern Italian rivers and Mediterranean waters on the Adriatic Sea. The region influenced by northern Italian rivers was marked by low community diversities, relatively high chlorophyll a standing crops and cell densities, high microplankton to nannoplankton community volume ratios, and the dominance of Nitzschia seriata. To the contrary, the region influenced by Mediterranean waters exhibited high community diversities with prominent oceanic and warm water elements, low chlorophyll a standing crops and microplankton cell densities, low microplankton to nannoplankton ratios, and a relatively conspicuous coccolithophore flora.Nannoplankton populations remained relatively constant throughout the Adriatic. However eutrophication resulted in a marked increase in the microplankton component of the community, with the diatom Nitzschia seriata serving as a prime indicator of the process, even in regions several hundred kilometers downstream from nutrient sources.Even under relatively low rates of river discharge, the influence of northern Italian rivers could be traced along the entire western sode of the sea to the Otranto Strait, with low north to south and high west to east gradients resulting from the effect of a cyclonic surface circulation pattern on inflowing Mediterranean waters in the south and river discharge in the north.     

Benthic ciliates in Adriatic Sea lagoons

Sediment samples were collected from four sandy and muddy bottom sites at both Sacca di Goro lagoon (northern Adriatic Sea) and Lesina lagoon (southern Adriatic Sea) on one occasion in May and one occasion in July in order to make a comparative study of ciliate abundance and diversity. The temperature, pH, dissolved oxygen, and redox potential were measured at the time of collection, the water content of the sediments was determined, and samples subjected to granulometric analysis. The ciliated protozoa in sub-samples from the top centimeter of sediment were identified to genus and species level and enumerated. Ciliates belonging to 38 and 33 species were found in the sediment of Sacca di Goro and Lesina, respectively, the diversity of ciliates varying widely between stations. Total ciliate numbers ranged from 32 to 759 cm(-2) and from 2 to 256 cm(-2) at Sacca di Goro and Lesina, respectively; the ciliate biomass ranged from 1.1 to 30.3 microg C cm(-2) in the samples collected at Sacca di Goro, and from 0.01 to 157 microg C cm(-2) in the samples collected at Lesina lagoon. Aspidisca lynceus, Aspidisca steini, Chilodonella uncinata, Frontonia marina, Pleuronema marinum, Strombidinopsis minimum, Strombidium sp., and Urotricha sp., were observed at the two lagoons but not in all stations; Keronopsis flavicans and Trachelostyla pediculariformis were often numerous at Goro lagoon, A. lynceus, Condylostoma patulum and Tracheloraphis teissieri were the most abundant ciliates observed at Lesina lagoon.