Developments in the taxonomy of silica‐scaled chrysophytes – from morphological and ultrastructural to molecular approaches

Taxonomy in silica‐scaled chrysophytes has gone through three morphological phases. From primary studies of the cell morphology in the 18th century, the focus was in the 20th century replaced by studies of the silica structures of the cell envelope. Now, in the latest decades the importance of DNA sequencing has been recognized, not only to support the taxonomic framework but also to obtain new understanding of taxonomic relations among particular taxa. In the first part of this review, we provide a historical overview of the developments in the taxonomy of scale‐bearing chrysophytes. In the second part, we present a phylogenetic reconstruction of chrysophyte algae, updated by newly obtained SSU rDNA and rbcL sequences of several isolated Synura, Mallomonas and Chrysosphaerella species. We detected significant incongruence between the phylogenies obtained from the different datasets, with the SSU rDNA phylogram being the most congruent with the morphological data. Significant saturation of the first rbcL codon position could indicate the presence of positive selection in the rbcL dataset. Within the Synurales, the relationships revealed by the phylogenetic analyses highlight the artificial infragenetic classification of Mallomonas and Synura, and the occurrence of cryptic diversity within a number of traditionally defined species. Finally, three new combinations are proposed based on the phylogenetic analyses: Tessellaria lapponica, Synura asmundiae and S. bjoerkii.     

Demographic History of Shorea curtisii (Dipterocarpaceae) Inferred from Chloroplast DNA Sequence Variations

We assessed the variability of chloroplast DNA sequences in populations of the dipterocarp forest tree, Shorea curtisii. This species is widely distributed in hill and coastal hill dipterocarp forests of the Malay Peninsula, whereas isolated populations are found in the coastal hills of north Borneo. Two chloroplast DNA regions (1555 bp of trnH‐psbA‐trnK and 925 bp of trnL‐trnF) were sequenced from 123 individuals collected from six Malay Peninsula and two Bornean populations. There were 15 chloroplast haplotypes derived from 16 polymorphic sites. A haplotype network revealed two distinct haplogroups that correlate with two geographic regions, the Malay Peninsula and Borneo. These two haplogroups differed by a number of mutations, and no haplotypes were shared between populations from the different geographic regions. This suggests an ancient diversification of these haplogroups, and that long‐distance seed dispersal was unlikely to have occurred during the Pleistocene when the Sunda Shelf was a contiguous landmass. Phylogenetic analysis of the haplotypes together with those found in other Shorea species showed that two haplogroups in S. curtisii appear in different positions of the phylogenetic tree. This could be explained by the persistence of ancestral polymorphisms or by ancient chloroplast capture. Low levels of genetic differentiation were found between populations within each geographic region. Signature of a bottleneck followed by demographic expansion was detected in the Malay Peninsula haplogroup. The presence of two distinct evolutionary lineages in the different regions suggests that they should be managed independently to conserve the major sources of genetic diversity in S. curtisii.     

Biogeographic patterns in scaled chrysophytes from the east coast of North America

1. We assessed the distribution of scaled chrysophytes in fresh waters along 3200 km of the east coast of North America (29° to 48°N) to determine any biogeographic patterns in relation to chemical, physical, climatic and spatial variables. 2. Scaled chrysophytes were identified using scanning electron microscopy and counted from 264 waterbodies in nine regions (20 subregions). Eighteen chemical, physical and climate variables were determined for each waterbody. We used Sorensen’s similarity index and analysis of similarity (ANOSIM) to evaluate whether the floras differed between regions, subregions, glaciated and non‐glaciated areas, as well as within sets of waterbodies with similar chemical and physical characteristics but situated in different regions. Distance‐based linear modelling (DISTLM) was used to evaluate the relative importance of the chemical, physical and climate factors in explaining the variability in the assemblages of scaled chrysophytes, and the resulting models were visualised using redundancy analysis (RDA). 3. Significant differences in the flora were found between all regions and most subregions, and between glaciated and non‐glaciated areas. Significant differences were also recorded between waterbodies with similar chemical and physical characteristics but situated in different regions. Many species were abundant along specific sections of the latitudinal gradient, but lacking from others. A set of environmental variables explained significant and independent portions of the variation in scaled chrysophytes, with pH and mean minimum July temperature accounting for 20% of the total. 4. The distribution of scaled chrysophytes along the east coast of North America is not homogeneous and there are biogeographic patterns, despite apparent dispersal mechanisms (migratory birds and wind events) that might act to reduce differences between regions. Rather, differences exist even between neighbouring subregions containing sites with statistically similar chemical and physical attributes. Environmental variables clearly play a significant role in determining whether species will inhabit a given site. However, species were not always found in waterbodies likely to support growth, implicating inadequate dispersal, poor transportability or both.     

Inferences of evolutionary history of a widely distributed mangrove species,Bruguiera gymnorrhiza,in the Indo‐West Pacific region

Inference of genetic structure and demographic history is fundamental issue in evolutionary biology. We examined the levels and patterns of genetic variation of a widespread mangrove species in the Indo‐West Pacific region, Bruguiera gymnorrhiza, using ten nuclear gene regions. Genetic variation of individual populations covering its distribution range was low, but as the entire species it was comparable to other plant species. Genetic differentiation among the investigated populations was high. They could be divided into two genetic clusters: the West and East clusters of the Malay Peninsula. Our results indicated that these two genetic clusters derived from their ancestral population whose effective size of which was much larger compared to the two extant clusters. The point estimate of speciation time between B. gymnorrhiza and Bruguiera sexangula was two times older than that of divergence time between the two clusters. Migration from the West cluster to the East cluster was much higher than the opposite direction but both estimated migration rates were low. The past Sundaland and/or the present Malay Peninsula are likely to prevent gene flow between the West and East clusters and function as a geographical or land barrier.     

Silica‐scaled chrysophytes from Abisko (Swedish Lapland)

The silica‐scaled chrysophyte flora of Swedish Lapland (near Abisko) was examined. Chrysophyte scales were found in 18 of the 32 investigated water bodies (lakes and pools). Altogether, 28 taxa from the classes Chrysophyceae and Synurophyceae were found. The most abundant species was Synura echinulata. Three species were observed for the first time in Sweden: Mallomonas maculata, M. rasilis and Spiniferomonas serrata.     

Further observations on the scaled Chrysophycean and Synurophycean flora of the Ocala National Forest, Florida, U.S.A.

The distributions of silica-scaled chrysophytes in 30 freshwater ponds located in the Ocala National Forest, Florida, U.S.A., relative to chemical gradients are described. Phytoplankton, periphyton, and surface sediments from each of the 30 sites were collected in March of 2000 and later analyzed extensively with both scanning electron microscopy (SEM) and light microscopy (LM) for scaled chrysophytes. In addition, water samples were used to measure a suite of chemical characteristics, including specific conductance, pH, alkalinity, total phosphorus, total nitrogen, chlorophyll- a , chloride, sulfate and base cation concentrations. Overall, waterbodies included in this study are oligotrophic, dilute, poorly buffered and low in pH. Including six previously described species which are largely known only from the Ocala National Forest, we have identified forty-nine taxa of silica-scaled Chry-sophyceae and Synurophyceae, 23 of which were present in 5 or more waterbodies, indicating that lakes in this region are quite diverse and abundant in scaled chrysophytes. The most important species included Synura petersenii, S. echinulata and one recently reported new species from this region, Mallomonas wujekii , which was found in 73% of the lakes in this survey. The number of taxa found per lake ranged from 2 to 23 and observations include new records of several rarely reported species. Although the flora includes species commonly found in more northern regions, it also includes a group of taxa that appear to be endemic to the region and others commonly found in more tropical regions. Lastly, a new form found in ten ponds, Mallomonas transsylvanica f. curvata , is described.     

Population structure of Squatina guggenheim (Squatiniformes,Squatinidae) from the south‐western Atlantic Ocean

Population genetic analyses based on both mitochondrial cytochrome b and the internal transcribed spacer 2 of recombinant (r)DNA genes were implemented to examine hypotheses of population differentiation in the angular angel shark Squatina guggenheim, one of the four most‐widespread endemic species inhabiting coastal ecosystems in the south‐western Atlantic Ocean. A total of 82 individuals of S. guggenheim from 10 sampling sites throughout the Río de la Plata mouth, its maritime front, the outer shelf at the subtropical confluence and the coastal areas of the south‐west Atlantic Ocean, were included. The analysis of molecular variance (AMOVA) based on the second internal transcribed spacer (its‐2) region supports that the samples from the outer shelf represent an isolated group from other sites. Historical gene flow in a coalescent‐based approach revealed significant immigration and emigration asymmetry between sampling sites. Based on the low level of genetic diversity, the existence of a long‐term population decline or a past recent population expansion following a population bottleneck could be proposed in S. guggenheim. This demographic differentiation suggests a degree of vulnerability to overexploitation in this endemic and endangered south‐west Atlantic Ocean shark, given its longevity and low reproductive potential.     

Higher β‐ and γ‐diversity at species and genetic levels in headwaters than in mid‐order streams in Hydropsyche (Trichoptera)

相似文献   

Hydrurus‐related golden algae (Chrysophyceae) cause yellow snow in polar summer snowfields

In polar regions, melting snow fields can be occupied by striking blooms of chrysophycean algae, which cause yellowish slush during summer. Samples were harvested at King George Island (South Shetland Islands, Maritime Antarctica) and at Spitsbergen (Svalbard archipelago, High Arctic). The populations live in an ecological niche, where water‐logged snow provides a cold and ephemeral ecosystem, possibly securing the survival of psychrophilic populations through the summer. A physiological adaptation to low temperatures was shown by photosynthesis measurements. The analysis of soluble carbohydrates showed the occurrence of glycerol and sugars, which may play a role in protection against intracellular freezing. Although both populations were made of unicells with Ochromonas‐alike morphology, investigation by molecular methods (18S rDNA sequencing) revealed unexpectedly a very close relationship to the mountain‐river dwelling Hydrurus foetidus (Villars) Trevisan. However, macroscopic thalli typical for the latter species were never found in snow, but are known from nearby localities, and harvested samples of snow algae exposed to dryness evolved a similar pervading, ‘fishy’ smell. Moreover, in both habitats tetrahedal zoospores with four elongate spikes were found, similar to what is known from Hydrurus. Our molecular results go along with earlier reports, where chrysophycean sequences of the same taxonomic affiliation were isolated from snow. This points to a distinct group of photoautotrophic, Hydrurus‐related chrysophytes, which are characteristic for long‐lasting, slowly melting snow packs in certain cold regions of the world.     

Freshwater scaled chrysophytes,heliozoa and thaumatomonad flagellates from Edo State,Nigeria

A total of nine silica-scaled chrysophytes (Chrysophyceae: two species each in Spiniferomonas and Paraphysomonas; Synurophyceae: five Mallomonas species), 16 heliozoa, and two scaled flagellates were recorded from 19 samples collected from Edo State, Nigeria, over a period covering both dry and rainy seasons in 2006–2007. Identifications were based on transmission electron microscopy. Eleven are new records for Africa, including a new species of Mallomonas, M. cribridomus. Also observed were two siliceous scaled colourless free-living thaumatomonad flagellates, Thaumatomastix nigeriensis and Gyromitus limax, the latter also a new record for Africa.     

Effect of historical factors on genetic variation in three terrestrial Cephalanthera species (Orchidaceae) with different breeding system on the Korean Peninsula

Previous studies have shown that levels of genetic diversity in species of the genus Cephalanthera covary with the breeding system. In the southern part of the Korean Peninsula, the three self‐compatible terrestrial orchids Cephalanthera erecta, C. falcata and C. longibracteata flower synchronously in sympatric populations. The food‐deceptive C. falcata with bright yellow flowers is predominantly outcrossing, whereas autogamy is the dominant strategy in both C. erecta and C. longibracteata, whose white flowers do not open fully. We examined genetic diversity (by means of allozymes) of the three species in sympatric populations (600 × 600 m area) in the Yeonwhasan Provincial Park (YPP) and in non‐sympatric populations outside YPP, South Korea. Thirteen out of 20 putative loci were variable across the three species, but there was a complete lack of allozyme variation within each species and we found no evidence of hybridisation. Our results suggest that historical factors, i.e. the Quaternary climate oscillations, have played a major role in determining levels of genetic diversity in the three Cephalanthera species. The Korean populations of C. erecta (a warm‐temperate/temperate element) and C. falcata (a warm‐temperate element) may have been established by a single introduction from a genetically depauperate ancestral population, likely located outside the Korean Peninsula. On the other hand, since C. longibracteata is a boreal/temperate element, it may have survived the Last Glacial Maximum in microrefugia located in low elevation regions within the Peninsula where it has been subjected to population bottlenecks reducing its genetic diversity.     

GENETIC STRUCTURE AND MALE-MEDIATED GENE FLOW IN THE GHOST BAT (MACRODERMA GIGAS)

The Australian ghost bat is a large, opportunistic carnivorous species that has undergone a marked range contraction toward more mesic, tropical sites over the past century. Comparison of mitochondrial DNA (mtDNA) control region sequences and six nuclear microsatellite loci in 217 ghost bats from nine populations across subtropical and tropical Australia revealed strong population subdivision (mtDNA φ_ST = 0.80; microsatellites UR_ST = 0.337). Low-latitude (tropical) populations had higher heterozygosity and less marked phylogeographic structure and lower subdivision among sites within regions (within Northern Territory [NT] and within North Queensland [NQ]) than did populations at higher latitudes (subtropical sites; central Queensland [CQ]), although sampling of geographically proximal breeding sites is unavoidably restricted for the latter. Gene flow among populations within each of the northern regions appears to be male biased in that the difference in population subdivision for mtDNA and microsatellites (NT φ_ST = 0.39, UR_ST = 0.02; NQ φ_ST = 0.60, UR_ST = ?0.03) is greater than expected from differences in the effective population size of haploid versus diploid loci. The high level of population subdivision across the range of the ghost bat contrasts with evidence for high gene flow in other chiropteran species and may be due to narrow physiological tolerances and consequent limited availability of roosts for ghost bats, particularly across the subtropical and relatively arid regions. This observation is consistent with the hypothesis that the contraction of the species' range is associated with late Holocene climate change. The extreme isolation among higher-latitude populations may predispose them to additional local extinctions if the processes responsible for the range contraction continue to operate.     

The genetic diversity and spatial genetic structure of the Corso‐Sardinian endemic Ferula arrigonii Bocchieri (Apiaceae)

Corsica and Sardinia represent major hotspots of plant diversity in the Mediterranean area and are priority regions for conservation due to their high number of endemic plant species. However, information supporting human decision‐making on the conservation of these species is still scarce, especially at the genetic level. In this work, the first assessment is reported of the species‐wide spatial genetic structure and diversity of Ferula arrigonii Bocchieri, a Corso‐Sardinian endemic located in a few coastal sites and on small islands. Nine populations covering the entire natural range of the species were investigated by means of AFLP (amplified fragment length polymorphism) markers. Results indicate that this species is characterised by high levels of genetic polymorphism (92% polymorphic fragments) and of genetic diversity (H_w = 0.317) and by relatively low differentiation among populations (F_st = 0.057). PCoA, Bayesian analysis and neighbour‐joining clustering were also employed to investigate the genetic structure of this species. Three genetically distinct groups were detected, although with considerable overlap between populations.     

Seasonal growth patterns of Saccharina latissima (Phaeophyceae,Ochrophyta) in a glacially‐influenced subarctic estuary

Global climate warming is exacerbating the melting of glaciers in Arctic and subarctic nearshore regions. Glacial discharge causes increases in sedimentation, abrasion of organisms, and sand/silt cover along with lowered light intensity, salinity, nitrate and hard substrate cover. These effects can have deleterious consequences on foundation species, such as the kelps that provide important habitat structure and support tightly‐linked food webs. The purpose of this study was to determine if the kelp, Saccharina latissima, from a glacially‐influenced and an oceanic shore in a subarctic Alaskan estuary exhibits differing seasonal growth patterns in response to its environment. Reciprocal in situ shore transplant studies examined seasonal patterns in growth, physiological competence (as maximum quantum yield), morphology and storage product levels (mannitol) of S. latissima. In situ growth was seasonally different at the two shore locations, with a shorter growing season at the glacially‐influenced shore. During the glacial melt season, the thalli at the two shore locations were morphologically distinct. Mannitol levels were typically higher in thalli from the oceanic site, with generally low mannitol levels at the end and the beginning of the growing season on both shores. Maximum quantum yield was consistently high (≥0.7) at both shore sites and did not vary seasonally. Growth rates of glacially‐influenced transplants to the oceanic shore suggest that the glacially‐influenced population has a different seasonal growth pattern from that of the oceanic shore site, which seems to be genetically fixed or based on differences in gene expression. It appears that S. latissima is a highly resilient species, partly due to high phenotypic plasticity, which may have led to genetic fixation under persistent glacial conditions.     

A meta‐analysis of leaf‐cutting ant nest effects on soil fertility and plant performance

1. Leaf‐cutting ants (LCAs) are considered as one of the most important agents of soil disturbances that affect vegetation patterns, but these assertions are based on isolated studies or anecdotal data. In this study, meta‐analysis techniques were used to quantitatively analyse the generality of these effects and determine some of their sources of variation. 2. The results reveal the following: (i) LCA nest sites showed higher levels of soil fertility than control sites, but the key source of these nutrients is the refuse material rather than the nest soil itself; (ii) refuse material from external piles tended to be richer in nutrient content than refuse material from internal refuse chambers; (iii) nest sites from temperate habitats showed higher cation content than those located in tropical/subtropical habitats; and (iv) nest sites showed higher plant growth than adjacent non‐nest sites (especially if plants have access to the refuse) but similar plant density and plant richness. 3. As LCAs improve nutrient availability in nest sites through the accumulation of refuse material, the location of the refuse will have a relevant role affecting vegetation. LCA species with external refuse dumps could benefit herbs, early vegetation stages and short‐living plants, whereas those with internal refuse chambers could benefit long‐living, large trees. However, the positive effect on individual plants does not extend to population and community levels. The foraging preferences of ants and the changes in microclimatic conditions around nests could act as selective ecological filters. 4. As refuse material from external piles and nest sites in temperate habitats tend to show higher fertility than refuse material from internal nest chambers and nest sites in tropical/subtropical habitats, LCA species with external refuse dumps in temperate regions could be of particular relevance for nutrient cycling and vegetation patterns.     

Mallomonas fuegiana (Synurophyceae), a new species of silica scaled chrysophytes from Tierra del Fuego, Argentina

Vigna, M. S. & Kristiansen, J. 1995. Mallomonas fuegiana (Synurophyceae), a new species of silica scaled chrysophytes from Tierra del Fuego, Argentina. — Nord. J. Bot. 15: 439–442. Copenhagen. ISSN 0107–055X.
During the research project "Cryptogamic Flora of Tierra del Fuego", a new species of Mallomonas has been found. It is described here as M. fuegiana , and is placed in the section Torquatae , close to Mallomonas schwemmlii and M. dickii .     

Diapause and cold tolerance in Asian species of the parasitoid Leptopilina (Hymenoptera: Figitidae)

Diapause and cold tolerance are essential for temperate insects to pass the winter, with the mechanisms controlling these two traits varying considerably among insects. In the present study, diapause and cold tolerance are compared among three Leptopilina species: Leptopilina japonica Novkovi? & Kimura, Leptopilina victoriae Nordlander and Leptopilina ryukyuensis Novkovi? & Kimura, all larval parasitoids of frugivorous drosophilid flies, with the aim of understanding their climatic adaptations. The first species is divided into the temperate (Leptopilina japonica japonica) and subtropical subspecies (Leptopilina japonica formosana), and the latter two species are distributed in the tropical and subtropical regions. The temperate subspecies of L. japonica enters prepupal diapause at low temperatures (15 or 18 °C), irrespective of photoperiod, and some individuals enter diapause when exposed to 0 °C for 1 or 2 day(s) or when placed at low humidity. Leptopilina victoriae also shows signs of diapause initiation at 15 °C, although L. ryukyuensis and L. j. formosana from the subtropical regions do not. Preimaginal viability at low temperature (13, 14 or 15 °C) is usually lower in L. victoriae from the tropical regions compared with L. japonica or L. ryukyuensis from the temperate or subtropical regions. Diapausing prepupae of the temperate subspecies appear to be cold tolerant. However, the cold tolerance of nondiapausing prepupae, pupae and adult females varies little among the tropical, subtropical and temperate species or subspecies, and adult males of the temperate subspecies of L. japonica are less cold tolerant than those of the tropical or subtropical species or subspecies. Cold tolerance may be unnecessary, except for diapausing individuals of the temperate species, because nondiapausing individuals appear in warmer seasons.     

Low genetic diversity in small leading edge populations of the European paleoendemic Ramonda serbica (Gesneriaceae) in Bulgaria

Ramonda serbica Pan?. (Gesneriaceae) is an endangered endemic species of the Balkan Peninsula which has been the subject of several studies in the past, but has not yet been investigated in terms of its genetic variation. Ramonda serbica is one of only five European representatives of the mainly subtropical family Gesneriaceae categorized as paleoendemics or Tertiary relicts sequestered in southern Europe by Quaternary climate oscillations. Here, an inter simple sequence repeat (ISSR) analysis was performed to determine the genetic diversity of five populations sampled from the geographically eastern fringe of its range in northwestern Bulgaria. We found relatively low levels of genetic diversity and significant genetic differentiation among the investigated populations, typical of a leading edge scenario. From a conservation point of view, the low genetic diversity, together with the presence of only few extant localities stress the need for urgent in situ and ex situ conservation actions to ensure the long‐term survival of R. serbica in Bulgaria.     

Silica-scaled chrysophytes (Synurophyceae) from some rivers and shallow lakes in Hungary

Silica-scaled chrysophytes are a special group in the phytoplankton of rivers and shallow lakes. They are present the whole year at low density, but sometimes — mainly during autumn and spring — some species can become frequent and very numerous to form real water blooms.In this study, seven species of silica-scaled chrysophytes have been recorded and identified by electron microscopy of phytoplankton samples from some rivers and shallow lakes in Hungary. Most of these silica-scaled chrysophytes have previously been found in eutrophic and hypertrophic localities, and almost all of them are common and widely distributed, even cosmopolitan. Only Synura echinulata Korshikov has not previously been recorded from Hungary. Some of them as Synura curtispina (Petersen & Hansen) Asmund, S. petersenii Korshikov, Mallomonas acaroides Perty emend. Ivanov, M. tonsurata Teiling were frequently found in the phytoplankton samples. Sometimes in autumn and winter Synura petersenii was the most abundant species in the phytoplankton and formed blooms.