Same habitat,different species: otolith microchemistry relationships between migratory and resident species support interspecific natal source classification

We tested the hypothesis that otolith trace elemental signatures (microchemistries) of mottled sculpin Cottus bairdi, slimy sculpin C. cognatus, and juvenile coho salmon Oncorhynchus kisutch were predictive of those of juvenile steelhead O. mykiss across many sites within the Lake Michigan basin. Laser ablation inductively coupled plasma mass spectrometry was used to generate otolith microchemistry signatures for each individual fish. For each species pair, statistical correlations of mean otolith concentrations of Mg, Mn, Cu, Zn, Sr, Ba, and Pb for each site were estimated. Linear equations describing these relationships were used to transform juvenile steelhead otolith microchemistry data to those of each of the other species. Transformed otolith microchemistry data were subjected to random forest classifications developed for mottled sculpin, slimy sculpin, and juvenile coho salmon to assess interspecific natal source assignment accuracies. Steelhead otolith concentrations of Sr were significantly correlated with those of each of the other species, whereas otolith concentrations of Ba and Mn were significantly correlated among some species pairs, but not others. Natal source assignment accuracies of juvenile steelhead to site and watershed generally decreased when otolith microchemistry data were transformed to those of mottled sculpin, slimy sculpin, and coho salmon. Miss-assigned fish often classified into nearby watersheds within larger hydrologic units, leading to higher assignment accuracies at coarser geographical resolutions (75–97% correct assignment to hydrologic unit for each species). These findings suggest that applications of otolith microchemistry data may extend beyond the species from which they are collected.     

Differential growth in estuarine and freshwater habitats indicated by plasma IGF1 concentrations and otolith chemistry in Dolly Varden Salvelinus malma

This study employed a combination of otolith microchemistry to indicate the recent habitat use, and plasma concentrations of the hormone insulin‐like growth factor 1 (IGF1) as an index of recent growth rate, to demonstrate differences in growth and habitat use by Dolly Varden Salvelinus malma occupying both freshwater and estuarine habitats in south‐west Alaska. Extensive sampling in all habitats revealed that fish had higher IGF1 levels in estuarine compared to lake habitats throughout the summer, and that the growth rates in different habitats within the estuary varied seasonally. In addition, otolith microchemistry indicated differentiation in estuarine habitat use among individual S. malma throughout summer months. Although growth in the estuary was higher than in fresh water in nearly all sites and months, the benefits and use of the estuarine habitats varied on finer spatial scales. Therefore, this study further illustrates the diverse life histories of S. malma and indicates an evaluation of the benefits of marine waters needs to include sub‐estuary scale habitat use.     

Demonstration and implications of habitat-specific chemical signatures in otoliths of juvenile summer flounder (Paralichthys dentatus Linnaeus) in North Carolina

The objective of this pilot study was to determine if otolith signatures of juvenile summer flounder Paralichthys dentatus (Linnaeus) were differentiable between beach and marsh habitat types within two North Carolina (NC), U.S.A., estuarine systems. Elemental signatures were differentiable between habitats in both systems, and in one system at smaller spatial scales (<5 km) than have been reported for any estuarine species using otolith microchemistry. These results indicate the potential for using summer flounder otolith elemental analysis to assess the nursery role of habitats within NC estuaries.     

Early life history of the small yellow croaker (Larimichthys polyactis) in sandy ridges of the South Yellow Sea

The early life history of the small yellow croaker Larimichthys polyactis was studied using the otolith microchemistry of juvenile fish and a recruitment survey in the sandy ridges of the South Yellow Sea. The otolith Sr/Ca ratio regime shifted markedly at the age of 5–7 days (early April) and 37–41 days (around early May). Subsequently, the Sr/Ca ratio was almost constant until late June, indicating an aggregation of L. polyactis juveniles in the relatively stable habitat of the sandy ridges, which was supported by a recruitment survey that showed a rapid increase in the number of juveniles in the same area between early May and the end of June. Variations in the Sr/Ca ratio between early April and early May might reflect a habitat adaptive strategy of L. polyactis in the pelagic stage to hydrodynamic processes of the sandy ridges. Based on the aforementioned habitat shifts and recruitment phenology, it was hypothesised that L. polyactis juveniles disperse between early April and early May, inhabit sandy ridges to feed, and migrate offshore in late June.     

基于耳石元素微化学的江苏吕泗近岸小黄鱼生境履历重建

利用电子显微探针元素分析技术,对江苏吕泗近岸海域小黄鱼矢耳石的Sr和Ca微化学特征进行了研究.结果表明: Sr含量在小黄鱼耳石的矢状面上呈非均匀分布,总体为核心部位高,其余部分明显降低.核心高Sr区域的Sr/Ca比值为(7.10±1.00),其余部分为(4.79±1.01),两者差异极显著.后者部分个体存在Sr含量更低的区域,Sr/Ca比值为(3.51±0.76).基于这些结果重建了吕泗近岸小黄鱼的生境履历： 它们在孵化及初期发育阶段生活在高盐度生境,随后的生长和发育过程则会洄游至盐度稍低的生境;部分个体的早期发育阶段还会选择利用更低盐度的生境.     

Effect of parental mate choice and semi‐natural early rearing environment on the growth performance and seawater tolerance of Chinook salmon Oncorhynchus tshawytscha

To assess whether parental mate choice and early rearing in a semi‐natural spawning channel may benefit the culture of Chinook salmon Oncorhynchus tshawytscha, 90 day growth trials were conducted using hatchery O. tshawytscha (hatchery), mate choice O. tshawytscha (i.e. the offspring of parents allowed to choose their own mate) that spent 6 months in a spawning channel prior to hatchery rearing (channel) and mate choice O. tshawytscha transferred to the hatchery as fertilized eggs (transfer). During the growth trials, all O. tshawytscha stocks were reared separately or in either mixed channel and hatchery or transfer and hatchery groups for comparison of performance to traditional practices. After 60 days in fresh water, all O. tshawytscha were transferred to seawater for an additional 30 days. Reared separately, all stocks grew c. 4·5 fold over 90 days but specific growth rate (G) and food conversion efficiency were higher in fresh water than after seawater transfer on day 60. In contrast, hatchery O. tshawytscha from mixed hatchery and channel and hatchery and transfer growth trials had a larger mass and length gain than their counterparts on day 60, but reduced G in seawater. In general, plasma levels of growth hormone, insulin‐like growth factor I and cortisol did not differ among any O. tshawytscha groups in either the separate or mixed growth trials. Despite some differences in gill Na⁺,K⁺‐ATPase activity, all O. tshawytscha had a high degree of seawater tolerance and experienced virtually no perturbation in plasma chloride following seawater transfer. Overall, all O. tshawytscha exhibited similar growth and seawater performance under traditional hatchery conditions and any benefit derived from either parental mate choice or semi‐natural early rearing environment was only observed in the presence of mutual competition with hatchery O. tshawytscha.     

Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river

We reared juvenile Chinook salmon for two consecutive flood seasons within various habitats of the Cosumnes River and its floodplain to compare fish growth in river and floodplain habitats. Fish were placed in enclosures during times when wild salmon would naturally be rearing in floodplain habitats. We found significant differences in growth rates between salmon reared in floodplain and river enclosures. Salmon reared in seasonally inundated habitats with annual terrestrial vegetation experienced higher growth rates than those reared in a perennial pond on the floodplain. Growth of fish in the non-tidal river upstream of the floodplain varied with flow in the river. When flows were high, there was little growth and high mortality, but when the flows were low and clear, the fish grew rapidly. Fish displayed very poor growth in tidally influenced river habitat below the floodplain, a habitat type to which juveniles are commonly displaced during high flow events due to a lack of channel complexity in the main-stem river. Overall, ephemeral floodplain habitats supported higher growth rates for juvenile Chinook salmon than more permanent habitats in either the floodplain or river. Variable responses in both growth and mortality, however, indicate the importance of providing habitat complexity for juvenile salmon in floodplain reaches of streams, so fish can find optimal places for rearing under different flow conditions.     

Potential Effects of Hydroelectric Dam Development in the Mekong River Basin on the Migration of Siamese Mud Carp (Henicorhynchus siamensis and H. lobatus) Elucidated by Otolith Microchemistry

The migration of Siamese mud carp (Henicorhynchus siamensis and H. lobatus), two of the most economically important fish species in the Mekong River, was studied using an otolith microchemistry technique. Fish and river water samples were collected in seven regions throughout the whole basin in Thailand, Laos and Cambodia over a 4 year study period. There was coherence between the elements in the ambient water and on the surface of the otoliths, with strontium (Sr) and barium (Ba) showing the strongest correlation. The partition coefficients were 0.409–0.496 for Sr and 0.055 for Ba. Otolith Sr-Ba profiles indicated extensive synchronized migrations with similar natal origins among individuals within the same region. H. siamensis movement has been severely suppressed in a tributary system where a series of irrigation dams has blocked their migration. H. lobatus collected both below and above the Khone Falls in the mainstream Mekong exhibited statistically different otolith surface elemental signatures but similar core elemental signatures. This result suggests a population originating from a single natal origin but bypassing the waterfalls through a passable side channel where a major hydroelectric dam is planned. The potential effects of damming in the Mekong River are discussed.     

Spatial and temporal variations in otolith chemistry and relationships with water chemistry: a useful tool to distinguish Atlantic salmon Salmo salar parr from different natal streams

Otolith elemental (Sr:Ca, Ba:Ca, Mn:Ca, Mg:Ca and Rb:Ca) and isotopic (⁸⁷Sr:⁸⁶Sr) profiles from several annual cohorts of juvenile Atlantic salmon Salmo salar were related to the physico‐chemical characteristics (chemical signatures, flow rate, temperature and conductivity) of their natal rivers over an annual hydrological cycle. Only Sr:Ca, Ba:Ca and ⁸⁷Sr:⁸⁶Sr in otoliths were determined by their respective ratios in the ambient water. Sr:Ca ratios in stream waters fluctuated strongly on a seasonal basis, but these fluctuations, mainly driven by water flow regimes, were not recorded in the otoliths. Otolith Sr:Ca ratios remained constant during freshwater residency at a given site and were exclusively related to water Sr:Ca ratios during low flow periods. While interannual differences in otolith elemental composition among rivers were observed, this variability was minor compared to geographic variability and did not limit classification of juveniles to their natal stream. Success in discriminating fish from different sites was greatest using Sr isotopes as it remained relatively constant across years at a given location.     

High‐resolution isotope analysis of young alewife Alosa pseudoharengus otoliths: assessment of temporal resolution and reconstruction of habitat occupancy and thermal history

Otoliths of age 0 year alewife Alosa pseudoharengus collected in different Lake Michigan habitats were microsampled, and carbon and oxygen isotope ratios (δ¹⁸O_otolith and δ¹³C_otolith) of resulting microsamples were quantified. To assess the temporal resolution of the method, age and otolith growth rates were also estimated by counting otolith daily growth increments. Core and outer intra‐otolith samples averaged 36 and 23 days, respectively. Because of the accretionary nature of otolith growth, a habitat switch by a larva occurring between 0 and 18 days post‐hatch may not be recognized by this approach. Taking this temporal resolution into account, A. pseudoharengus habitat occupancy and thermal history in nearshore Lake Michigan, and a connecting drowned river‐mouth lake were documented. Comparisons between δ¹⁸O_otolith and δ¹³C_otolith profiles, and isotope values of Lake Michigan habitats suggested that movements by individual fish between a nearshore area of Lake Michigan proper and drowned river‐mouth lake habitats were rare. Some individuals evidently moved between habitats, and such movements occurred during different periods of ontogeny. Thermal reconstructions, based on δ¹⁸O_otolith values suggested that during early life (e.g. first month of life) young A.pseudoharengus appeared to inhabit microhabitats with temperatures greater than mean epilimnetic temperatures. This study demonstrates not only the utility of intra‐otolith geochemical analysis to describe the complexity of fish behaviour in fresh water but also identifies limitations of the present approach.     

Validation of daily increments and a marine‐entry check in the otoliths of sockeye salmon Oncorhynchus nerka post‐smolts

Juvenile sockeye salmon Oncorhynchus nerka that were reared and smolted in laboratory conditions were found to produce otolith daily increments, as well as a consistently visible marine‐entry check formed during their transition to salt water. Field‐collected O. nerka post‐smolts of an equivalent age also displayed visible checks; however, microchemistry estimates of marine‐entry date using Sr:Ca ratios differed from visual estimates by c. 9 days suggesting that microstructural and microchemical processes occur on different time scales.     

Beavers (Castor canadensis) influence habitat for juvenile salmon in a large Alaskan river floodplain

Our aim was to determine how beavers affect habitats and food resources for juvenile salmon in the Kwethluk River in western Alaska.

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Differential uses of coral reef habitats by a poorly-known cryptic fish predator

This study used otolith microchemistry to evaluate whether the moray eel Gymnothorax chilospilus uses different habitats throughout its life (mainly juvenile and adult phases). Of the most informative trace elements within otoliths (the twelve isotopes ²³Na, ²⁵Mg, ⁴³Ca, ⁵⁵Mn, ⁵⁹Co, ⁶⁰Ni, ⁶³Cu, ⁶⁶Zn, ⁸⁶Sr, ¹¹¹Cd, ¹³⁸Ba and ²⁰⁸Pb) only three ratios of Ca (Na:Ca, Sr:Ca and Ba:Ca) were informative and therefore used in a multivariate regression-tree analysis. Using a multivariate partitioning, three main phases were described from profiles, including the larval life phase (leptocephali), the intermediate phase (longest section between the larval life phase and the terminal phase) and the terminal phase (final section i.e., the most recent months preceding the death of fish). According to concentrations of the three ratios to Ca, G. chilospilus can be separated into three groups during their larval life stage (very different in Sr and Na), four groups during the intermediate phase (few differences in Sr and Na) and three groups during the terminal phase (differences in Sr), illustrating that G. chilospilus inhabit different habitats during these three phases. Our results showed that the leptocephali encountered different oceanic water masses with fluctuating Sr:Ca ratios during the early larval phase. During the intermediate phase (main part of their life-span), they lived in lagoonal waters such as fringing reefs or reef flats of lagoonal islets, characterized by a lower Sr:Ca ratio. During the latter part of their life, approximately one third of G. chilospilus encountered more oceanic waters close to or at barrier reefs, suggesting possible movements of these fish along a coast-to-ocean gradient.     

Juvenile Chinook salmon (<Emphasis Type="Italic">Oncorhynchus tshawytscha</Emphasis>) growth in off-channel and main-channel habitats on the Sacramento River,CA using otolith increment widths

Few studies have quantified juvenile salmon growth among different habitats or evaluated the mechanisms controlling salmon growth and survival. We used otolith microstructure to compare daily relative growth rates among main-channel riverine areas, off-channel ponds, and non-natal seasonal tributaries of the Sacramento River, CA. We compared prey availability, prey preference, and stomach fullness between these sites. We observed larger average otolith growth increments, higher prey densities, and warmer water temperatures in both off-channel ponds and non-natal seasonal tributaries compared to the main-channel areas in both 2001 and 2002. Our findings suggest that warmer temperatures and abundant prey in off-channel habitats during Central Valley Chinook salmon rearing periods may lead to higher growth rates, which in turn may improve juvenile survival. Our results suggest that off-channel habitats may be critical habitats to include in conservation and management plans for juvenile salmon.     

Evidence of yellow perch, largemouth bass and pumpkinseed metapopulations in coastal embayments of Lake Ontario

Coastal embayments have been and will continue to be constructed along the northwest shoreline of Lake Ontario to restore and create warmwater fish habitat. However, very little is known about the biological connections among embayments. Using otolith microchemistry on pumpkinseed, largemouth bass and yellow perch collected from three constructed embayments in 2006?C2009, we confirm that these three species of fish each exist in a metapopulation. We find that juvenile pumpkinseed, largemouth bass and yellow perch occupy embayments different from their natal habitat after their first winter, and for at least pumpkinseed, continue to move among embayments after their second winter. We hypothesize that these fishes move among embayments after haphazardly dispersing from their overwintering habitat to the littoral zone each spring. Habitat restoration and remediation efforts in coastal Great Lakes habitats should take a system-based management approach that considers the spatial proximity of embayments, and attempts to create or preserve connected networks.     

Unmasking continental natal homing in goliath catfish from the upper Amazon

1. Amazonian goliath catfishes are widespread in the Amazon Basin. Recently, otolith ⁸⁷Sr:⁸⁶Sr analyses using laser ablation–multi-collector–inductively coupled plasma mass spectrometry (LA-MC-ICPMS) revealed a >8,000 km trans-Amazonian natal homing in Brachyplatystoma rousseauxii among fish caught and hatched in the largest Amazon River tributary, the upper Madeira basin. Although also suspected for fish in the upper Amazon, homing could not be demonstrated owing to less distinct environmental ⁸⁷Sr:⁸⁶Sr gradients along the Amazon mainstem. Using scanning X-ray fluorescence microscopy (SXFM), a separate study provided evidence that Se:Ca and Sr:Ca are useful markers for identifying migration into Andean headwaters and the estuarine environment.
2. We analysed otoliths of known ⁸⁷Sr:⁸⁶Sr profiles using SXFM mapping to test if Sr:Ca and Se:Ca patterns could demonstrate natal homing for three fish caught in the upper Amazon, using as reference two individuals that were natal homers and two forced residents (hatched after the construction of hydroelectric dams on the Madeira River) from the upper Madeira River.
3. As hypothesised, although the Sr isotope profiles of the upper Amazon individuals were uninformative, two of them presented similar alternating mirror patterns of Sr:Ca and Se:Ca to those of the upper Madeira natal homers, indicating migrations out of the Andean region and into the estuary area. Both were therefore natal homers from the upper Amazon.
4. The third individual from the upper Amazon presented similar Sr:Ca and Se:Ca patterns to those of the upper Madeira residents, suggesting it was a natural resident from the upper Amazon.
5. By combining the results of ⁸⁷Sr:⁸⁶Sr analyses (LA-MC-ICPMS) and Sr:Ca and Se:Ca mappings (SXFM) that are completely independent of one another, we demonstrated that B. rousseauxii also performs natal homing in the upper Amazon. Our results indicate that the life cycle of B. rousseauxii is more complex than previous literature hypothesised, with the existence of partial migration, even in absence of physical barriers. Quantifying the relative importance of these different life-history strategies will have important implications for fisheries management. Our results also lay the groundwork for conservation efforts in the context of hydropower development in the Amazon Basin and set testable hypotheses of the potential impacts of the Madeira River dams.

     

Assessment of spawning site fidelity in interior Fraser River Coho salmon Oncorhynchus kisutch using otolith microchemistry,in British Columbia,Canada

Coho Salmon Oncorhynchus kisutch show fidelity to natal spawning watersheds. Fine-scale homing, however, within rivers is not well understood. Interior Fraser Coho (IFC) salmon eggs were incubated at known spawning locations in the Coldwater River, two main stem sites and one-off channel pond site, providing otolith reference data for comparison to otolith signatures for returning adults using laser ablation inductively coupled plasma mass spectrometry. Elemental ratios for Ba:Ca and Sr:Ca in otoliths of juvenile O. kisutch differed significantly among the spawning locations examined. Juvenile otolith data were used to conduct a linear discriminant analysis to assess fine-scale homing in adults. Juvenile data were all assigned to the location where they had been incubated, producing a robust data set used to compare adult otoliths and define natal locations based on elemental signatures in otoliths of adult spawners. Homing and straying were apparent at the reach level; 57.1% of adults returned to their natal spawning locations, while 42.9% strayed to other spawning sites within the Coldwater River. Straying to novel incubation sites at the reach scale demonstrated plasticity in homing within a watershed.     

Contribution of water chemistry and fish condition to otolith chemistry: comparisons across salinity environments

This study quantified the per cent contribution of water chemistry to otolith chemistry using enriched stable isotopes of strontium (⁸⁶Sr) and barium (¹³⁷Ba). Euryhaline barramundi Lates calcarifer, were reared in marine (salinity 40), estuarine (salinity 20) and freshwater (salinity 0) under different temperature treatments. To calculate the contribution of water to Sr and Ba in otoliths, enriched isotopes in the tank water and otoliths were quantified and fitted to isotope mixing models. Fulton's K and RNA:DNA were also measured to explore the influence of fish condition on sources of element uptake. Water was the predominant source of otolith Sr (between 65 and 99%) and Ba (between 64 and 89%) in all treatments, but contributions varied with temperature (for Ba), or interactively with temperature and salinity (for Sr). Fish condition indices were affected independently by the experimental rearing conditions, as RNA:DNA differed significantly among salinity treatments and Fulton's K was significantly different between temperature treatments. Regression analyses did not detect relations between fish condition and per cent contribution values. General linear models indicated that contributions from water chemistry to otolith chemistry were primarily influenced by temperature and secondly by fish condition, with a relatively minor influence of salinity. These results further the understanding of factors that affect otolith element uptake, highlighting the necessity to consider the influence of environment and fish condition when interpreting otolith element data to reconstruct the environmental histories of fish.     

The Morphology and Periodic Structures of the Otolith of the Chinook Salmon (Oncorhynchus tshawytscha), and Temperature-dependent Variation in Otolith Microscopic Growth Increment Width

The otolith (sagitta) of the chinook salmon (Oncorhynchus tshawytscha) has a variable external crystalline morphology which is related to differences in the growth rate of crystals in different parts of the otolith. The internal crystal structure of the otolith is complex with different mineral phases in different growth fields of the otolith and a well-defined series of microscopic growth increments in both the dorsal and the ventral parts (orientation in situ) of the otolith. The period of the microscopic growth increments was shown, by both a rearing experiment and interpolation from fish of known age, to be daily. By rearing sibling chinook salmon at different temperatures (while still maintaining them on the same diet) it was shown that the width of the daily growth increment varies with temperature, but neither multi- nor sub-daily increments appear in the area of regular, daily growth incrementation. Inclusions of the vaterite morph of calcium carbonate crystallizing in the botryoidal habit occur in the otherwise aragonitic otolith. Regularly spaced check rings in the sulcul part of the otolith are homologous with those occurring in the dorsal and ventral growth axis and are. on average, separated by about 28 microincrements.     

Carryover effects of larval environment on individual variation in a facultatively diadromous fish

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