大豆向热带地区发展的遗传基础

大豆(Glycine max)是光周期敏感的植物,该特性是决定其生育期及其生态适应区的关键因素。温带的大豆品种引种到热带地区(短日照)时,开花期和成熟期提前、产量降低,限制了大豆在热带地区的种植。长童期(LJ)大豆品种的发现是解决该问题的重要突破。在短日照条件下,LJ品种比温带品种开花晚、体量大、成熟晚且产量提高。前期研究发现,J位点是控制LJ性状的关键位点。近期,我国科学家通过精细定位克隆了J基因,发现其与拟南芥(Arabidopsis thaliana)早花基因(ELF3)同源。他们通过功能互补和近等基因系等方法验证了J基因的功能,在短日照条件下,等位基因j比J开花晚、成熟晚且产量提高。进一步研究发现,J蛋白与E1基因(豆科植物开花抑制因子)的启动子结合抑制E1基因的表达,从而解除E1对大豆开花基因(FT)的抑制,促进大豆在短日照下开花。研究还发现在大豆种质资源中存在多种j等位变异。该研究引领了大豆生育期遗传研究的新方向,揭示了大豆向热带地区发展的遗传基础。     

Soybean AP1 homologs control flowering time and plant height

Flowering time and plant height are key agronomic traits that directly affect soybean (Glycine max) yield. APETALA1 (AP1) functions as a class A gene in the ABCE model for floral organ development, helping to specify carpel, stamen, petal, and sepal identities. There are four AP1 homologs in soybean, all of which are mainly expressed in the shoot apex. Here, we used clustered regularly interspaced short palindromic repeats (CRISPR) – CRISPR‐associated protein 9 technology to generate a homozygous quadruple mutant, gmap1, with loss‐of‐function mutations in all four GmAP1 genes. Under short‐day (SD) conditions, the gmap1 quadruple mutant exhibited delayed flowering, changes in flower morphology, and increased node number and internode length, resulting in plants that were taller than the wild type. Conversely, overexpression of GmAP1a resulted in early flowering and reduced plant height compared to the wild type under SD conditions. The gmap1 mutant and the overexpression lines also exhibited altered expression of several genes related to flowering and gibberellic acid metabolism, thereby providing insight into the role of GmAP1 in the regulatory networks controlling flowering time and plant height in soybean. Increased node number is the trait with the most promise for enhancing soybean pod number and grain yield. Therefore, the mutant alleles of the four AP1 homologs described here will be invaluable for molecular breeding of improved soybean yield.     

Molecular mechanisms for the photoperiodic regulation of flowering in soybean

Photoperiodic flowering is one of the most important factors affecting regional adaptation and yield in soybean (Glycine max). Plant adaptation to long-day conditions at higher latitudes requires early flowering and a reduction or loss of photoperiod sensitivity; adaptation to short-day conditions at lower latitudes involves delayed flowering, which prolongs vegetative growth for maximum yield potential. Due to the influence of numerous major loci and quantitative trait loci (QTLs), soybean has broad adaptability across latitudes. Forward genetic approaches have uncovered the molecular basis for several of these major maturity genes and QTLs. Moreover, the molecular characterization of orthologs of Arabidopsis thaliana flowering genes has enriched our understanding of the photoperiodic flowering pathway in soybean. Building on early insights into the importance of the photoreceptor phytochrome A, several circadian clock components have been integrated into the genetic network controlling flowering in soybean: E1, a repressor of FLOWERING LOCUS T orthologs, plays a central role in this network. Here, we provide an overview of recent progress in elucidating photoperiodic flowering in soybean, how it contributes to our fundamental understanding of flowering time control, and how this information could be used for molecular design and breeding of high-yielding soybean cultivars.     

Transcriptome Profile of a Long-Juvenile Soybean Genotype Huaxia-3 Under Short and Long Photoperiod

Plant Molecular Biology Reporter - The j allele delays flowering and enhances yield of long juvenile (LJ) soybean under short day (SD) condition. However, the underlying mechanism of j in flowering...     

SoySNP618K array: A high-resolution single nucleotide polymorphism platform as a valuable genomic resource for soybean genetics and breeding

Innovations in genomics have enabled the development of low-cost, high-resolution, single nucleotide polymorphism (SNP) genotyping arrays that accelerate breeding progress and support basic research in crop science. Here, we developed and validated the SoySNP618K array (618,888 SNPs) for the important crop soybean. The SNPs were selected from whole-genome resequencing data containing 2,214 diverse soybean accessions; 29.34% of the SNPs mapped to genic regions representing 86.85% of the 56,044 annotated high-confidence genes. Identity-by-state analyses of 318 soybeans revealed 17 redundant accessions, highlighting the potential of the SoySNP618K array in supporting gene bank management. The patterns of population stratification and genomic regions enriched through domestication were highly consistent with previous findings based on resequencing data, suggesting that the ascertainment bias in the SoySNP618K array was largely compensated for. Genome-wide association mapping in combination with reported quantitative trait loci enabled fine-mapping of genes known to influence flowering time, E2 and GmPRR3b, and of a new candidate gene, GmVIP5. Moreover, genomic prediction of flowering and maturity time in 502 recombinant inbred lines was highly accurate (>0.65). Thus, the SoySNP618K array is a valuable genomic tool that can be used to address many questions in applied breeding, germplasm management, and basic crop research.     

不同大花类群淫羊藿属植物的花部特征及生殖特征研究

淫羊藿是我国重要的草本植物,在中药、功能性食品和园林观赏等领域都具有重要用途,受地域差异性影响,淫羊藿属植物的植株形态、花部特征、开花物候和生殖特征各不相同。本研究对四川不同产地野生种群大花类淫羊藿（巫山淫羊藿、粗毛淫羊藿和宝兴淫羊藿）的开花动态、花部特征、访花昆虫与繁殖系统进行了对比研究。结果表明：（1）3种淫羊藿属植物的开花期较为集中,巫山淫羊藿和粗毛淫羊藿的花期为3月下旬～4月下旬,单花花期均为3～4 d;宝兴淫羊藿的花期为4月中旬～5月中旬,单花花期5～6 d;（2）膜翅目和双翅目昆虫为3种淫羊藿属植物的有效访花者,有效访花者访花特性与花部特征之间具有明显的相关性;（3）3种淫羊藿属植物的花序、花和果实的数量受所处环境影响较大,自然结实率：巫山淫羊藿>宝兴淫羊藿>粗毛淫羊藿;温度和光照是最主要的影响因子。     

模拟降雨格局变化对亚热带地区两树种液流特征的影响

在全球变化的影响下, 中国亚热带地区近几十年降水格局发生了急剧变化。这种变化对亚热带常绿阔叶林植物的生长和森林水分平衡的影响尚不清楚。为此, 该研究从植物整树蒸腾角度出发, 通过在天然次生林中进行人工隔除降雨模拟降水格局变化, 研究降水变化对植物水分利用的影响。试验于2012年9月至2014年12月在广东鹤山森林生态系统国家野外科学观测研究站内的常绿阔叶林内进行, 通过林下搭建遮雨棚, 截留干季(10月至次年3月)的降雨, 并在湿季(次年4至9月)等量返还到样地中, 在保证总降水量不变的前提下模拟干季更干、湿季更湿(DD)的降雨格局变化。在此期间对样地内的木荷(Schima superba)与火力楠(Michelia macclurei)树干液流特征进行连续监测。运用独立样本t检验对对照组(AC)两个树种间的平均最大液流通量密度(¯J_S)差异性进行分析, 并将DD处理下两个树种的¯J_S与AC进行对比, 来检验隔除降雨对森林蒸腾的效应。结果表明: 当光合有效辐射(PAR)大于1 100 μmol·m ^-2·s ^-1时, 对照样地火力楠和木荷的¯J_S分别为(49.5 ± 1.7)和(43.6 ± 2.0) mL∙m ^-2∙s ^-1, 且前者表现出对光合有效辐射(PAR)更强的敏感性。截留降雨处理开始后(2012-10), 两个树种DD与AC处理的¯J_S比值(DD:AC)均先减小后增加, 其中木荷的比值从处理前的0.74下降到了第1次截留降雨处理期(2012-10至2013-03)的0.68, 增加到了第2次截留降雨处理期(2013-10至2014-03)的0.93以及第3次截留降雨处理期(2014-10至2014-11)的1.04; 火力楠则从处理前的1.00下降到了第1次截留降雨处理期的0.94, 在第2次截留降雨处理期增长到1.06, 变化幅度小于木荷。此外, 在第3次截留降雨处理期, 木荷在相同的水汽压亏缺及PAR下能够保持更高的¯J_S。这些结果表明, 短期干旱事件会促使森林蒸腾急剧下降, 然而在长期干旱下, 植物会通过提高¯J_S来弥补干旱带来的损失, 而木荷由于具有较大的¯J_S可塑性, 从而使其在干旱条件下维持更高的水分传输速率。     

Responses of apical ion fluxes to NaCl stress in Elaeagnus angustifolia seedlings

Aims Elaeagnus angustifolia is one of the most salt-tolerant species. The objective of this study was to understand the mechanisms of ion transporation in E. angustifolia exposed to different salt concentrations through manipulations of K⁺/Na⁺ homeostasis.
Methods Seedlings of two variants of the species, Yinchuan provenance (YC, salt-sensitive type) and the Alaer provenance (ALE, salt-tolerant type), were treated with three different NaCl application modes, and the ion fluxes in the apical regions were measured using non-invasive micro-test technology (NMT). In mode 1, Na⁺ and K⁺ fluxes were measured after 150 mmol·L^-1 NaCl stress lasted for 24 h. In mode 2, K⁺ and H⁺ fluxes were quantified with a transient stimulation of NaCl solution. In mode 3, Amiloride (Na⁺/H⁺ antiporters inhibitor) and tetraethylammonium (TEA, K⁺ channel inhibitor) was used to treat apical regions of E. angustifolia seedlings after NaCl stress for 24 h, respectively.
Important findings Under NaCl stress for 24 h, net effluxes of Na⁺ and K⁺ were increased significantly. The net Na⁺ effluxes of YC provenance seedlings (720 pmol·cm^-2•s^-1) were lower than that of ALE provenance (912 pmol·cm^-2·s^-1), but the net K⁺ efflux was higher in YC provenance. Under the instantaneous NaCl stimulation, net K⁺ efflux was remarkably increased, with the net K⁺ efflux of YC provenance always higher than that of ALE provenance. Interestingly, H⁺ at the apical regions was found from influx to efflux, with the net H⁺ efflux of ALE provenance greater than that of the YC provenance. Under the NaCl and NaCl + Amiloride treatment, the net Na⁺ efflux of ALE provenance seedlings was higher than that of YC provenance, while the net K⁺ efflux was less in ALE provenance seedlings. On the other hand, the differences in net Na⁺ and K⁺ effluxes were insignificant between the two provenances under the control group and NaCl + TEA treatment. In conclusion, NaCl stress caused Na⁺ accumulation and K⁺ outflows of E. angustifolia seedlings; The E. angustifolia seedlings utilize Na⁺/H⁺ antiporters to reduce Na⁺ accumulation by excretion; and the maintenance of K⁺/Na⁺ homeostasis in salt-tolerant E. angustifolia provenance seedlings roots accounted for a greater Na⁺ extrusion and a lower K⁺ efflux under NaCl stress. Results from this study provide a theoretical basis for further exploring salt-tolerant E. angustifolia germplasm resource.     

Optimization of bio-indigo production by recombinant E. coli harboring fmo gene

A bacterial flavin-containing monooxygenase (FMO) gene was cloned from Methylophaga aminisulfidivorans MP^T, and a plasmid pBlue 2.0 was constructed to express the bacterial fmo gene in E. coli. To increase the production of bio-indigo, upstream sequence size of fmo gene was optimized and response surface methodology was used. The pBlue 1.7 plasmid (1686 bp) was prepared by the deletion of upstream sequence of pBlue 2.0. The recombinant E. coli harboring the pBlue 1.7 plasmid produced 662 mg l⁻¹ of bio-indigo in tryptophan medium after 24 h of cultivation in flask. The production of bio-indigo was optimized using a response surface methodology with a 2ⁿ central composite design. The optimal combination of media constituents for the maximum production of bio-indigo was determined as tryptophan 2.4 g l⁻¹, yeast extract 4.5 g l⁻¹ and sodium chloride 11.4 g l⁻¹. In addition, the optimum culture temperature and pH were 30 °C and pH 7.0, respectively. Under the optimized conditions mentioned above, the recombinant E. coli harboring pBlue 1.7 plasmid produced 920 mg of bio-indigo per liter in optimum tryptophan medium after 24 h of cultivation in fermentor. The combination of truncated insert sizes and culture optimization resulted in a 575% increase in the production of bio-indigo.     

A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency

In rice (Oryza sativa), amylose content (AC) is the major factor that determines eating and cooking quality (ECQ). The diversity in AC is largely attributed to natural allelic variation at the Waxy (Wx) locus. Here we identified a rare Wx allele, Wx^mw, which combines a favorable AC, improved ECQ and grain transparency. Based on a phylogenetic analysis of Wx genomic sequences from 370 rice accessions, we speculated that Wx^mw may have derived from recombination between two important natural Wx alleles, Wxⁱⁿ and Wx^b. We validated the effects of Wx^mw on rice grain quality using both transgenic lines and near‐isogenic lines (NILs). When introgressed into the japonica Nipponbare (NIP) background, Wx^mw resulted in a moderate AC that was intermediate between that of NILs carrying the Wx^b allele and NILs with the Wx^mp allele. Notably, mature grains of NILs fixed for Wx^mw had an improved transparent endosperm relative to soft rice. Further, we introduced Wx^mw into a high‐yielding japonica cultivar via molecular marker‐assisted selection: the introgressed lines exhibited clear improvements in ECQ and endosperm transparency. Our results suggest that Wx^mw is a promising allele to improve grain quality, especially ECQ and grain transparency of high‐yielding japonica cultivars, in rice breeding programs.     

Mutagenesis of GmFT2a and GmFT5a mediated by CRISPR/Cas9 contributes for expanding the regional adaptability of soybean

Flowering time is a key agronomic trait that directly influences the successful adaptation of soybean (Glycine max) to diverse latitudes and farming systems. GmFT2a and GmFT5a have been extensively identified as flowering activators and integrators in soybean. Here, we identified two quantitative trait loci (QTLs) regions harbouring GmFT2a and GmFT5a, respectively, associated with different genetic effects on flowering under different photoperiods. We analysed the flowering time of transgenic plants overexpressing GmFT2a or GmFT5a, ft2a mutants, ft5a mutants and ft2aft5a double mutants under long‐day (LD) and short‐day (SD) conditions. We confirmed that GmFT2a and GmFT5a are not redundant, they collectively regulate flowering time, and the effect of GmFT2a is more prominent than that of GmFT5a under SD conditions whereas GmFT5a has more significant effects than GmFT2a under LD conditions. GmFT5a, not GmFT2a, was essential for soybean to adapt to high latitude regions. The ft2aft5a double mutants showed late flowering by about 31.3 days under SD conditions and produced significantly increased numbers of pods and seeds per plant compared to the wild type. We speculate that these mutants may have enormous yield potential for the tropics. In addition, we examined the sequences of these two loci in 202 soybean accessions and investigated the flowering phenotypes, geographical distributions and maturity groups within major haplotypes. These results will contribute to soybean breeding and regional adaptability.     

不同氮水平下不同种稗草对水稻产量形成的影响

以‘南粳9108’(粳稻)为材料,自移栽至成熟期分别与无芒稗、西来稗和光头稗共培养,以无稗草共培为对照,观察不同种类共培稗草在不同施氮水平下(0、120、240、360 kg N·hm^-2)对水稻产量形成的影响.结果表明:相同氮肥水平下,不同种稗草株高表现为西来稗>无芒稗>光头稗,生育期由长到短为无芒稗>西来稗>光头稗.随着氮肥施用量的增加,不同种稗草的生物量在240 kg N·hm^-2下达到最大值,然后降低,无芒稗和西来稗的生物量均显著高于光头稗.在0 kg N·hm^-2下,不同种稗草对水稻产量无显著影响;在120 kg N·hm^-2下,无芒稗和光头稗处理水稻产量与无稗草处理差异不显著,但西来稗处理产量较无稗草处理显著降低;在240 kg N·hm^-2下,无芒稗、西来稗和光头稗处理显著减产;在360 kg N·hm^-2下,无芒稗和西来稗处理产量较无稗草处理显著降低,光头稗处理与无稗草处理差异不显著.稗草和氮肥对水稻产量形成具有明显的互作效应.120 kg N·hm^-2下,西来稗处理显著降低了水稻灌浆期剑叶硝酸还原酶活性、光合速率和根系氧化力以及成熟期氮积累量和干物质量,其他稗草处理与对照差异不显著;在240和360 kg N·hm^-2下,无芒稗和西来稗处理降低了水稻上述指标;在0 kg N·hm^-2下,各处理的上述指标差异不显著.回归分析表明,稗草表型对水稻产量的影响由大到小的顺序为生物量、株高、生育期和分蘖数,推测稗草较大的生物量造成水稻剑叶光合速率、硝酸还原酶活性、根系氧化力、氮积累量和干物质积累量降低,影响了水稻的生长发育,造成水稻减产.     

林分密度对马尾松林下植物与土壤种子库多样性的影响

林分密度是影响林下植物多样性的重要因子。本研究以马尾松人工林为对象,设置低密度(1575株·hm^-2,D₁)、中密度(2474株·hm^-2,D₂)和高密度(3550株·hm^-2,D₃)3个林分密度,分析林下植物和土壤种子库多样性及二者的关系,为马尾松人工林实现多目标可持续发展提供科学依据。结果表明: 3种林分密度林下草本与灌木植物共有42科62属70种,D₁密度以喜光植物种类分布较多,而D₂、D₃密度以耐阴植物为主;3种林分密度间的草本、灌木的Margalef (M)、Shannon (H)、Simpson (D)、Pielou (J_sw)、Alatalo (Al)指数均随林分密度增加而呈下降趋势,且在草本与灌木层中对密度的响应不同。在草本层中,D₁与D₃的H、D、J_sw、Al指数均存在显著差异;在灌木层中,不同林分密度J_sw和Al指数存在显著差异,H和D指数差异不显著。土壤种子库H、D、J_sw和Al指数均随林分密度增加呈先下降后升高趋势,D₁密度的物种丰富度及多样性最高;不同林分密度下土壤种子库Jaccard与Sorensen相似性系数均较低。草本层M与J_sw指数呈显著正相关;灌木层林分密度与H、D、J_sw、Al指数的相关性大于草本层,而草本、灌木层的林分密度与J_sw指数均呈显著负相关。林分密度1575株·hm^-2是马尾松林下植被生长发育较为合适的密度,能够维持林下植物多样性,有利于马尾松人工林的可持续经营。     

New mutations in cloned Escherichia coli umuDC genes: novel phenotypes of strains carrying a umuC125 plasmid

The umuDC locus of Escherichia coli is required for most mutagenesis by UV and many chemicals. Mutations in E. coli umuDC genes cloned on pBR322-derived plasmids wer e isolated by two methods. First, spontaneously-arising mutant umuDC plasmids that failed to confe cold-sensitive growth on a lexA51(Def) strain were isolated by selection. Second, mutant umuDC plasmids that affected apparent mutant yield after UV-irradiation in a strain carrying umuD⁺C⁺ in the chromosome were isolated by screening hydroxylamine-mutagenized umuD⁺C⁺ plasmids. pBR322-derived umuD⁺C⁺ plasmids inhibited the induction of the SOS response of lexA⁺ strains as measured by expression of din::Mu dl(lac) Ap) fusionsbut most mutant plasmids did not. Mutant plasmids defective in complementation of chromosomal umuD44, umuC36, or both were found among those selected for failure to confer cold-sensitivity, whereas those identified by the screening procedure yielded mostly mutant plasmids with more complex phenotypes. We studied in greater detail a plasmid pLM109, carrying the umuC125 mutation. This plasmid increased the sensitivity of lexA⁺ strainsto killing by UV-irradiation but was able to complement the deficiencies of umuC mutants in UV mutagenesis. pLM109 failed to confer cold-sensitive growth on lexA(Def) strains but inhibited SOS induction in lexA⁺ strains. The effect of pLM109 on the UV sensitivity of lexA(Def)strains was similar to that of the parental umuD⁺C⁺ plasmid. The mutation responsible for the phenotypes of pLM109 was localized to a 615-bp fragment. DNA sequencing revealed that the umuC125 mutation was a G:C → A:T transition that changed codon 39 of umuC from GCC → GTC thus changing Ala39 to Val39. The implications of the umuC125 mutation for umuDC-dependent effects on UV-mutagenesis and cell survival after UV damage are discussed.     

The thermal biology of three southern African elephant-shrews

1. 1. The thermal characteristics of Petrodromus tetradactylus, Elephantulus intufi and E. brachyrhynchus were investigated and compared with other elephant-shrews that occur in the southern African subregion.

2. 2. E. intufi and E. brachyrhynchus appear to have lower than expected basal metabolic rates (1.1185 ± 0.1623 and 0.9649 ± 0.1638 ml O₂ g⁻¹ h⁻¹, respectively) and high, narrow thermoneutral zones, similar to other elephant-shrews investigated previously. In contrast P. tetradactylus has a basal metabolic rate (0.871 ± 0.027 ml O₂ g⁻¹ h⁻¹) close to expected for body mass, and a broad, low thermoneutral zone.

3. 3. The thermal biology of macroscelids is discussed in terms of their distribution, microhabitat and body size.

     

Cellular determinants of the mutational specificity of 1-nitroso-6-nitropyrene and 1-nitroso-8-nitropyrene in the lacI gene of Escherichia coli.

We have characterized 202 lacI⁻ mutations, and 158 dominant lacI^−d mutations following treatment of Escherichia coli strains NR6112 and EE125 with 1-nitroso-6-nitropyrene (1,6-NONP), an activated metabolite of the carcinogen 1,6-dinitropyrene. In all, 91% of the induced point mutations occurred at G:C residues. The −(G:C) frameshifts were the dominant mutational class in the lacI⁻ collections of both NR6112 and EE125, and in the lacI^−d collection of NR6112. Frameshift mutations occurred preferentially in runs of guanine residues, and their frequency increased with the length of the reiterated sequence. In strain EE125, which contained the plasmid pKM101, there was a marked stimulation in the frequency of base substitution mutations that was particularly apparent in the lacI^−d collection. This study completes a comprehensive analysis of 1194 lacI⁻ and 348 lacI^−d mutations induced by either 1,6-NONP or its positional isomer 1-nitroso-8-nitropyrene (1,8-NONP) in strains of E. coli that differ with regard to their ability to carry out nucleotide excision repair and/or their ability to express the translesion synthesis DNA polymerase RI (MucAB) encoded by plasmid pKM101. Among the mutations are 763 frameshift mutations, 367 base substitutions and 47 deletions; these mutations have been characterized at more than 300 distinct sites in the lacI gene. Our studies provide detailed insight into the DNA sequence alterations and mutational mechanisms associated with dinitropyrene mutagenesis. We review the mutational spectra, and discuss cellular lesion repair or tolerance mechanisms that modulate the observed mutational specificity.