Geographic variation in the age of temperate-zone reptile and amphibian species: Southern Hemisphere species are older

Despite controversy over alternative definitions, the species is the fundamental operational unit of biodiversity, and species are the building-blocks of conservation. But is a ‘species’ from one part of the world the same as a ‘species’ from elsewhere? Our meta-analysis of molecular phylogenetic data reveals that reptile and amphibian species distributed in temperate-zone areas of the Northern Hemisphere are younger than taxa from the Southern Hemisphere, probably reflecting the greater impact of past climatic variation on Northern Hemisphere habitats. Because a species'' age may influence its vulnerability to anthropogenic threats, geographical variation in species ages should be incorporated into conservation planning.     

Mapping tree species vulnerability to multiple threats as a guide to restoration and conservation of tropical dry forests

Understanding the vulnerability of tree species to anthropogenic threats is important for the efficient planning of restoration and conservation efforts. We quantified and compared the effects of future climate change and four current threats (fire, habitat conversion, overgrazing and overexploitation) on the 50 most common tree species of the tropical dry forests of northwestern Peru and southern Ecuador. We used an ensemble modelling approach to predict species distribution ranges, employed freely accessible spatial datasets to map threat exposures, and developed a trait‐based scoring approach to estimate species‐specific sensitivities, using differentiated trait weights in accordance with their expected importance in determining species sensitivities to specific threats. Species‐specific vulnerability maps were constructed from the product of the exposure maps and the sensitivity estimates. We found that all 50 species face considerable threats, with an average of 46% of species’ distribution ranges displaying high or very high vulnerability to at least one of the five threats. Our results suggest that current levels of habitat conversion, overexploitation and overgrazing pose larger threats to most of the studied species than climate change. We present a spatially explicit planning strategy for species‐specific restoration and conservation actions, proposing management interventions to focus on (a) in situ conservation of tree populations and seed collection for tree planting activities in areas with low vulnerability to climate change and current threats; (b) ex situ conservation or translocation of populations in areas with high climate change vulnerability; and (c) active planting or assisted regeneration in areas under high current threat vulnerability but low climate change vulnerability, provided that interventions are in place to lower threat pressure. We provide an online, user‐friendly tool to visualize both the vulnerability maps and the maps indicating priority restoration and conservation actions.     

中国濒危兽类保护遗传学研究进展与展望

我国是全球生物多样性大国,拥有包括大熊猫、金丝猴、华南虎、麋鹿、白鱀豚等特有物种和旗舰物种在内的丰富兽类资源。近几十年来,土地利用模式转变、盗猎、环境污染、气候变化等因素使许多兽类物种面临生存威胁,导致物种遗传多样性丧失。而遗传多样性是生物多样性的基本组成部分,决定了物种和种群能否长期生存。保护遗传学作为保护生物学的一大分支学科,旨在通过遗传学分析探明种群遗传变异和物种濒危的遗传学机制。近40年来,随着研究手段和技术的不断发展,我国兽类保护遗传学在遗传多样性和近交水平评估、景观遗传学、生态遗传学和圈养种群遗传管理等方面都取得了重要成果。然而,未来人类社会发展可能为濒危兽类带来的威胁依然存在,高通量测序等新技术的进一步发展则能够帮助我们更加深入地了解濒危物种和种群遗传适应与濒危机制,从而实现对濒危兽类的有效管理与保护。     

Native or not? Tracing the origin of wild-caught and captive freshwater turtles in a threatened and widely distributed species (Emys orbicularis)

Pet and food trade are among the major threats for many chelonians species worldwide. We investigate the impact of the present and past trade in European pond turtles (Emys orbicularis, E. trinacris) on their extant distribution pattern. Using a comprehensive mtDNA dataset of cytochrome b haplotypes derived from more than 1,550 individuals, we assigned wild-caught allochthonous and captive turtles from six European countries to their native regions across the entire distribution range. We found allochthonous haplotypes in all countries surveyed, providing evidence of long-distance translocations owing to past and present trade, illegal poaching or collection by tourists. In summary, we identify source regions of allochthonous turtles and past and present trade routes. Moreover, we point out future directions which would contribute to conservation and management of these threatened species.     

A Vulnerability Assessment of 300 Species in Florida: Threats from Sea Level Rise,Land Use,and Climate Change

Species face many threats, including accelerated climate change, sea level rise, and conversion and degradation of habitat from human land uses. Vulnerability assessments and prioritization protocols have been proposed to assess these threats, often in combination with information such as species rarity; ecological, evolutionary or economic value; and likelihood of success. Nevertheless, few vulnerability assessments or prioritization protocols simultaneously account for multiple threats or conservation values. We applied a novel vulnerability assessment tool, the Standardized Index of Vulnerability and Value, to assess the conservation priority of 300 species of plants and animals in Florida given projections of climate change, human land-use patterns, and sea level rise by the year 2100. We account for multiple sources of uncertainty and prioritize species under five different systems of value, ranging from a primary emphasis on vulnerability to threats to an emphasis on metrics of conservation value such as phylogenetic distinctiveness. Our results reveal remarkable consistency in the prioritization of species across different conservation value systems. Species of high priority include the Miami blue butterfly (Cyclargus thomasi bethunebakeri), Key tree cactus (Pilosocereus robinii), Florida duskywing butterfly (Ephyriades brunnea floridensis), and Key deer (Odocoileus virginianus clavium). We also identify sources of uncertainty and the types of life history information consistently missing across taxonomic groups. This study characterizes the vulnerabilities to major threats of a broad swath of Florida’s biodiversity and provides a system for prioritizing conservation efforts that is quantitative, flexible, and free from hidden value judgments.     

Threats and biodiversity in the mediterranean biome

Aim Global conservation assessments recognize the mediterranean biome as a priority for the conservation of the world's biodiversity. To better direct future conservation efforts in the biome, an improved understanding of the location, magnitude and trend of key threats and their relationship with species of conservation importance is needed. Location Mediterranean‐climate regions in California‐Baja California, Chile, South Africa, Australia and the Mediterranean Basin. Methods We undertook a systematic, pan‐regional assessment of threats in the mediterranean biome including human population density, urban area and agriculture. To realize the full implications of these threats on mediterranean biodiversity, we examined their relationship with species of conservation concern: threatened mammals at the global scale and threatened plants at the subecoregional scale in California, USA. Results Across the biome, population density and urban area increased by 13% and agriculture by 1% between 1990 and 2000. Both population density and urban area were greatest in California‐Baja California and least in Australia while, in contrast, agriculture was greatest in Australia and least in California‐Baja California. In all regions lowlands were most affected by the threats analysed, with the exception of population density in the Chilean matorral. Threatened species richness had a significant positive correlation with population density at global and subecoregional scales, while threatened species were found to increase with the amount of urban area and decrease as the amount of natural area and unfragmented core area increased. Main conclusions Threats to mediterranean biodiversity have increased from 1990 to 2000, although patterns vary both across and within the five regions. The need for future conservation efforts is further underlined by the positive correlation between species of conservation concern and the increase in population density over the last decade. Challenges to reducing threats extend beyond those analysed to include human–environmental interactions and their synergistic effects, such as urbanization and invasive species and wildfires.     

Global conservation priorities for marine turtles

Where conservation resources are limited and conservation targets are diverse, robust yet flexible priority-setting frameworks are vital. Priority-setting is especially important for geographically widespread species with distinct populations subject to multiple threats that operate on different spatial and temporal scales. Marine turtles are widely distributed and exhibit intra-specific variations in population sizes and trends, as well as reproduction and morphology. However, current global extinction risk assessment frameworks do not assess conservation status of spatially and biologically distinct marine turtle Regional Management Units (RMUs), and thus do not capture variations in population trends, impacts of threats, or necessary conservation actions across individual populations. To address this issue, we developed a new assessment framework that allowed us to evaluate, compare and organize marine turtle RMUs according to status and threats criteria. Because conservation priorities can vary widely (i.e. from avoiding imminent extinction to maintaining long-term monitoring efforts) we developed a “conservation priorities portfolio” system using categories of paired risk and threats scores for all RMUs (n = 58). We performed these assessments and rankings globally, by species, by ocean basin, and by recognized geopolitical bodies to identify patterns in risk, threats, and data gaps at different scales. This process resulted in characterization of risk and threats to all marine turtle RMUs, including identification of the world''s 11 most endangered marine turtle RMUs based on highest risk and threats scores. This system also highlighted important gaps in available information that is crucial for accurate conservation assessments. Overall, this priority-setting framework can provide guidance for research and conservation priorities at multiple relevant scales, and should serve as a model for conservation status assessments and priority-setting for widespread, long-lived taxa.     

Distribution and Conservation Status of the Red-Shanked Douc (Pygathrix nemaeus) in Lao PDR: An Update

The endangered red‐shanked douc (Pygathrix nemaeus), endemic to Lao PDR, Vietnam, and perhaps Cambodia, remains little known. The Lao population is highly threatened. To improve conservation prospects of the species there, we here update a status review from 1999. Subsequent literature (mostly not readily available to the outside scientific community) was reviewed critically. Doucs and their habitat in Lao PDR faced continuous, increasing threats in the past 10 years through large development projects and heavy hunting. Many locations with records from the 1990s were not surveyed in the last decade, so douc persistence remains uncertain in them. Given the poor status of the species in Vietnam and Cambodia, the Lao population is surely the world's largest and the best hope for the species’ global conservation. Resources for conserving species are very limited in the country, urging prioritization of populations, so available resources have maximum effect. Nakai–Nam Theun and Hin Namno National Protected Areas hold the largest populations of P. nemaeus, but face great threats from hunting. Management of these areas (and secondary priority areas) should focus on control of this illegal activity. Am. J. Primatol. 74:874‐889, 2012. © 2012 Wiley Periodicals, Inc.     

Multi-Action Planning for Threat Management: A Novel Approach for the Spatial Prioritization of Conservation Actions

Planning for the remediation of multiple threats is crucial to ensure the long term persistence of biodiversity. Limited conservation budgets require prioritizing which management actions to implement and where. Systematic conservation planning traditionally assumes that all the threats in priority sites are abated (fixed prioritization approach). However, abating only the threats affecting the species of conservation concerns may be more cost-effective. This requires prioritizing individual actions independently within the same site (independent prioritization approach), which has received limited attention so far. We developed an action prioritization algorithm that prioritizes multiple alternative actions within the same site. We used simulated annealing to find the combination of actions that remediate threats to species at the minimum cost. Our algorithm also accounts for the importance of selecting actions in sites connected through the river network (i.e., connectivity). We applied our algorithm to prioritize actions to address threats to freshwater fish species in the Mitchell River catchment, northern Australia. We compared how the efficiency of the independent and fixed prioritization approach varied as the importance of connectivity increased. Our independent prioritization approach delivered more efficient solutions than the fixed prioritization approach, particularly when the importance of achieving connectivity was high. By spatially prioritizing the specific actions necessary to remediate the threats affecting the target species, our approach can aid cost-effective habitat restoration and land-use planning. It is also particularly suited to solving resource allocation problems, where consideration of spatial design is important, such as prioritizing conservation efforts for highly mobile species, species facing climate change-driven range shifts, or minimizing the risk of threats spreading across different realms.     

Using the IUCN Red List to determine effective conservation strategies

Threatened species lists continue to grow while the world’s governments fail to meet biodiversity conservation goals. Clearly, we are failing in our attempts to conserve biodiversity. Yet 37 mammal species genuinely improved in status in the 2009 IUCN Red List, suggesting there are ways to successfully conserve biodiversity. Here, I compare the threats and conservation actions (proposed and implemented) by the expert assessors of the Red List of improving species to a further 144 declining mammal species to determine whether specific threats were more easily remedied, and whether certain conservation actions were more successful than others. Declining species were faced with different threatening processes to mammals improving in status suggesting some threats were easier to treat (e.g. hunting) than others (climate change, invasive species). Declining species had different proposed and implemented conservation actions than improving species suggesting some actions are more successful than others. Threatened species were invariably found in conservation areas, suggesting protected area creation alone is not an overly successful strategy for species at risk of extinction. Conservation actions were more frequently implemented for improving than declining species suggesting active conservation is effective in improving the status of biodiversity. There were significant differences between proposed and implemented conservation actions suggesting some actions are easier to implement than others. Reintroduction, captive breeding and hunting restriction were more effective in conserving mammals than site creation and invasive species control. These findings highlight effective conservation actions for mammals worldwide and allow the rationalisation of threat mitigation measures to ensure economically justifiable biodiversity conservation strategies.     

Conservation Concerns for Butterflies in Urban Areas of Australia

The threats of rapid urbanisation to Australian butterflies are discussed, and examples given of the taxa of conservation concern and measures for their management. Compounding threats, such as intensive recreational activity in coastal regions, are also important consequences of urbanisation. Maintenance of threatened specialist species and more generalist widespread species may demand rather different approaches for practical conservation. Most species capable of persisting in urban areas depend on their adults adapting to modified habitats, and their immature stages utilising cultivated exotic or native food plants. Exotic weeds and inappropriate fire regimes are recognised as major threats to the survival of species in remnant bushland.     

Reserves in Context: Planning for Leakage from Protected Areas

When protected areas reduce threats within their boundaries, they often displace a portion of these threats into adjacent areas through a process known as ‘leakage’, undermining conservation objectives. Using theoretical models and a case study of terrestrial mammals in Indonesia, we develop the first theoretical explanation of how leakage impacts conservation actions, and highlight conservation strategies that mitigate these impacts. Although leakage is a socio-economic process, we demonstrate that its negative impacts are also affected by the distribution of species, with leakage having larger impacts in landscapes with homogeneous distribution of species richness. Moreover, leakage has a greater negative effect when conservation strategies are implemented opportunistically, even creating the potential for perversely negative consequences from protected area establishment. Leakage thereby increases the relative benefits of systematic conservation planning over opportunism, especially in areas with high leakage and heterogeneously distributed species. Although leakage has the potential to undermine conservation actions, conservation planning can minimize this risk.     

Biodiversity conservation in a fast-growing metropolitan area in China: a case study of plant diversity in Beijing

As the capital of China, Beijing has experienced extensive urbanization in the past two decades. To explore the effect of urbanization on plant diversity, we investigated the vascular plant diversity of the whole Beijing Municipality in three different functional (urban, suburban and exurban) regions. For its geo-diversity, Beijing has a rather abundant vascular plant diversity (2,276 species), including 207 species of conservation concern such as endemic, threatened and protected species. The exurban region had not only the highest species diversity (1,998 species), but also the most species of conservation concern (194 species). Urban region possessed the maximum alien species in terms of both absolute number and proportional representation, while the suburban region had the least species diversity (1,026 species). Some problems, such as wetland shrink and biological invasions, were common in the whole Beijing Municipality. However, primary threats to biodiversity differed in the three functional regions. The urban and suburban regions mainly suffered from habitat loss and fragmentation due to urban sprawl, while the exurban region faced serious ecosystem degradation from increasing disturbance from both local and urban people. Based on our investigation, we put forward conservation strategies for the three regions: improving the structure and ecological function of green spaces in urban region, preserving as much remnant natural habitats in the suburban region, and restricting the rural tourism and establishing a biosphere reserve in the exurban region. In addition, improving public education and orientating that more to social aspects of conservation practice is strongly recommended.     

Mepimbat tedul proujek: Indigenous knowledge of culturally significant freshwater turtles addresses species knowledge gaps in Northern Australia

Indigenous biocultural knowledge offers valuable insights for species conservation; however, like biological diversity, associated cultural knowledge is also often threatened. This paper demonstrates how Indigenous biocultural knowledge of species can contribute to addressing gaps in species occurrence data and conservation knowledge using a case study from the South East Arnhem Land Indigenous Protected Area (SEAL IPA), northern Australia. Using a series of mapping workshops and interviews this collaborative project recorded Indigenous biocultural knowledge of the distribution, ecology, cultural significance and threats to freshwater turtles (freshwoda teduls in the local Indigenous language, Roper River Kriol). Based on past freshwoda tedul hunting experiences, 74 Indigenous knowledge holders identified 753 past freshwoda tedul occurrences, significantly adding to the 12 occurrences previously listed for the SEAL IPA in Australia's online species database, the Atlas of Living Australia. Importantly, these were the first ‘memory’ records of past species sightings by Indigenous people to be recognized and added to Australia's national species database. In addition, a blog summarizing this research was promoted through the Atlas of Living Australia, raising awareness of the Indigenous biocultural knowledge associated with these species. The Mepimbat tedul proujek revealed the cultural significance of freshwoda teduls and reported declines in abundance since the turn of the century, implicating invasive hard-hooved ungulates (buffalo, pig) and reduced rainfall. The addition of non-sacred Indigenous knowledge to free online species databases may offer innovative solutions for storage, interaction and sharing of indigenous knowledge, with opportunities for intergenerational and cross-cultural learning and broader application in conservation management and decision-making.     

Threat to the point: improving the value of comparative extinction risk analysis for conservation action

Comparative extinction risk analysis is a common approach for assessing the relative plight of biodiversity and making conservation recommendations. However, the usefulness of such analyses for conservation practice has been questioned. One reason for underperformance may be that threats arising from global environmental changes (e.g., habitat loss, invasive species, climate change) are often overlooked, despite being widely regarded as proximal drivers of species’ endangerment. We explore this problem by (i) reviewing the use of threats in this field and (ii) quantitatively investigating the effects of threat exclusion on the interpretation and potential application of extinction risk model results. We show that threat variables are routinely (59%) identified as significant predictors of extinction risk, yet while most studies (78%) include extrinsic factors of some kind (e.g., geographic or bioclimatic information), the majority (63%) do not include threats. Despite low overall usage, studies are increasingly employing threats to explain patterns of extinction risk. However, most continue to employ methods developed for the analysis of heritable traits (e.g., body size, fecundity), which may be poorly suited to the treatment of nonheritable predictors including threats. In our global mammal and continental amphibian extinction risk case studies, omitting threats reduced model predictive performance, but more importantly (i) reduced mechanistic information relevant to management; (ii) resulted in considerable disagreement in species classifications (12% and 5% for amphibians and mammals, respectively, translating to dozens and hundreds of species); and (iii) caused even greater disagreement (20–60%) in a downstream conservation application (species ranking). We conclude that the use of threats in comparative extinction risk analysis is important and increasing but currently in the early stages of development. Priorities for future studies include improving uptake, availability, quality and quantification of threat data, and developing analytical methods that yield more robust, relevant and tangible products for conservation applications.     

Ancient woodlands: modern threats

This review discusses the following adverse influences on long-established forests, wood-pastures, and savannas in Europe and other continents: destruction and fragmentation; depletion; pollution and eutrophication; fire and lack of fire; excessive shade; excessive numbers of deer; invasive species and cultivars; infilling of savanna; climate change; and globalization of plant diseases. Human influences on the world's mainland forests and savannas have been pervasive throughout the Holocene, to the extent that recovering 'virgin forest' becomes a somewhat nebulous conservation objective. Present and future threats arise both from increasing human activities and from withdrawal of the human activities that have shaped forests in the past. The severity of different threats depends on so many factors, especially the properties of different plants and animals, that generalization is impossible; however, in the long term, spread of pathogens is probably the most serious threat.     

Conserving biodiversity efficiently: what to do, where, and when

Conservation priority-setting schemes have not yet combined geographic priorities with a framework that can guide the allocation of funds among alternate conservation actions that address specific threats. We develop such a framework, and apply it to 17 of the world's 39 Mediterranean ecoregions. This framework offers an improvement over approaches that only focus on land purchase or species richness and do not account for threats. We discover that one could protect many more plant and vertebrate species by investing in a sequence of conservation actions targeted towards specific threats, such as invasive species control, land acquisition, and off-reserve management, than by relying solely on acquiring land for protected areas. Applying this new framework will ensure investment in actions that provide the most cost-effective outcomes for biodiversity conservation. This will help to minimise the misallocation of scarce conservation resources.     

Conservation genetics of carnivores in Italy

Pleistocene climatic changes shaped the patterns of biodiversity in Europe and around the Mediterranean. Describing the phylogeographic structure of animal populations and inferring past population dynamics is essential to develop a framework for conservation biology in Europe. Direct persecution, habitat loss, population fragmentation and hybridization with domesticated conspecifics, are the main threats to the survival of large mammalian species. In this paper I will summarize the available information on phylogeography and population genetics of brown bear, wolf, wildcat and otters in Italy and in Europe.     

Wilderness and future conservation priorities in Australia

Aim Most approaches to conservation prioritization are focused on biodiversity features that are already threatened. While this is necessary in the face of accelerating anthropogenic threats, there have been calls to conserve large intact landscapes, often termed ‘wilderness’, to ensure the long‐term persistence of biodiversity. In this study, we examine the consequences of directing conservation expenditure using a threat‐based framework for wilderness conservation. Location The Australian continent. Methods We measured the degree of congruence between the extent of wilderness and the Australian protected area network in 2000 and 2006, which was established using a threat‐based systematic planning framework. We also assessed priority areas for future reserve acquisitions identified by the Australian government under the current framework. Results In 2000, 14% of Australia’s wilderness was under formal protection, while the protected area network covered only 8.5% of the continent, suggesting a historical bias towards wilderness protection. However, the expansion of the reserve system from 2000 to 2006 was biased towards non‐wilderness areas. Moreover, 90% of the wilderness that was protected over this period comprised areas not primarily designated for biodiversity conservation. We found a significant (P < 0.05) negative relationship between bioregions considered to be a priority for future reserve prioritization and the amount of wilderness they contain. Main conclusions While there is an urgent need to overcome past biases in reserve network design so as to better protect poorly represented species and habitats, prioritization approaches should not become so reactive as to ignore the role that large, intact landscapes play in conserving biodiversity, especially in a time of human‐induced climate change. This can be achieved by using current or future threats rather than past threats to prioritize areas, and by incorporating key ecological processes and costs of acquisition and management within the planning framework.