War of Ontology Worlds: Mathematics,Computer Code,or Esperanto?

The use of structured knowledge representations-ontologies and terminologies-has become standard in biomedicine. Definitions of ontologies vary widely, as do the values and philosophies that underlie them. In seeking to make these views explicit, we conducted and summarized interviews with a dozen leading ontologists. Their views clustered into three broad perspectives that we summarize as mathematics, computer code, and Esperanto. Ontology as mathematics puts the ultimate premium on rigor and logic, symmetry and consistency of representation across scientific subfields, and the inclusion of only established, non-contradictory knowledge. Ontology as computer code focuses on utility and cultivates diversity, fitting ontologies to their purpose. Like computer languages C++, Prolog, and HTML, the code perspective holds that diverse applications warrant custom designed ontologies. Ontology as Esperanto focuses on facilitating cross-disciplinary communication, knowledge cross-referencing, and computation across datasets from diverse communities. We show how these views align with classical divides in science and suggest how a synthesis of their concerns could strengthen the next generation of biomedical ontologies.     

Control hunting of wild animals: health,money, or pleasure?

In many parts of the world, millions of wildlife species are hunted for sport, food, skins, and other products. In recent years, a backlash has emerged from certain groups of society against this long-standing human pursuit. However, attitudes towards the control of wild animals to reduce the health risk to other animals, to lessen agricultural damage, or to protect game species, may generate a different reaction, where even killing is tolerated. In this paper, we analyze the public’s acceptance of control hunting in Andalusia (southern Spain). Our results suggest that lethal control to improve domestic animal health is highly accepted (75%) is more controversial when animals are killed for damaging crops (59% acceptance) and is highly unaccepted when the goal is to enhance game species numbers (22% acceptance). Older people and males, in particular, accept more readily some of these control-hunting measures. These results are needed to understand better the public attitudes on which conservation managers can base their decisions when control hunting is required.     

Mechanism of Chromosomal Boundary Action: Roadblock,Sink, or Loop?

Boundary elements or insulators subdivide eukaryotic chromosomes into a series of structurally and functionally autonomous domains. They ensure that the action of enhancers and silencers is restricted to the domain in which these regulatory elements reside. Three models, the roadblock, sink/decoy, and topological loop, have been proposed to explain the insulating activity of boundary elements. Strong predictions about how boundaries will function in different experimental contexts can be drawn from these models. In the studies reported here, we have designed assays that test these predictions. The results of our assays are inconsistent with the expectations of the roadblock and sink models. Instead, they support the topological loop model.     

The origins of entasis: illusion, aesthetics or engineering?

A typical characteristic of columns in Doric temples is entasis; a slight convexity in the body of a column. Often, and particularly in guide-books, it is suggested that entasis is intended to compensate for an illusion of concavity in columns with truly straight sides. We have investigated whether any such visual illusion exists, both in parallel sided and in tapering columns in a series of experiments, finding little evidence to support any illusion-compensation theory. Further, we explored the possibility that entasis was employed for purely aesthetic reasons, but the results do not support this conclusion. Finally, evidence supporting an engineering role for entasis is presented.     

The future of C4 research--maize, Flaveria or Cleome?

C4 photosynthesis has evolved multiple times among the angiosperms: the spatial rearrangement of the photosynthetic apparatus, combined with alterations to the leaf structure, allows CO2 to be concentrated around Rubisco. Higher CO2 concentrations at Rubisco decrease the rate of oxygenation and therefore reduce the amount of energy lost through photorespiration. C4 plants are particularly prevalent in tropical and subtropical regions because they can sustain higher rates of net photosynthesis; they also represent some of our most productive crops. To date, most progress in identifying genes crucial for C4 photosynthesis has been made using maize and Flaveria. We propose that Cleome, the most closely related genus containing C4 species to the C3 model Arabidopsis, be used together with Arabidopsis resources to accelerate our progress in elucidating the genetic basis of C4 photosynthesis.     

The Puzzle of Chuukese Mobility Patterns—Contradictory,Dualistic, or Pluralistic?

Education, employment, and health care are the three main reasons given by Micronesians for the ongoing flow of migrants to the USA. In many families, remittances constitute the only source of steady cash income. Therefore, migration is seen as part of the islanders’ subsistence strategy. Emotional implications for the individual are subsumed under the collective good. This paper will review migration motifs as experienced by chóón (people of) Chuuk, Federated States of Micronesia. With regard to kin relations, the value of family and notions of the self, focus is put on those who leave and/or come back as well as on those who make the decisions. Western spectators are often puzzled by the apparent contradictions between the adherence to traditional culture and the practices of modern life, between love for land and kin and the perceived necessity to nevertheless leave both behind. This paper thus aims to explore whether these dynamics are really in contradiction or rather parallel and interlocking dimensions of cultural concepts of locality and mobility that are connected to ideas of belonging.     

The function of duetting in magpie-larks: conflict, cooperation, or commitment?

Avian duetting is a poorly understood phenomenon despite many hypotheses as to its function. Contrary to the recent view that duetting functions for mate guarding and is a result of conflict between the sexes, Australian magpie-larks, Grallina cyanoleuca, do not use duetting as a paternity guard. I used a playback experiment to investigate the role of antiphonal duetting in territorial defence and pair bond maintenance, two traditional hypotheses about the function of duetting. The experiment showed that, like many nonduetting species, magpie-larks recognize neighbours on the basis of song. It also provided evidence of functional differences between duetting and solo singing which indicate that temporal coordination of song between partners is used to maintain the territory and pair bond. Duets were more threatening territorial signals than solo songs: males initiated more vocalizations in response to playback of duets than playback of solos. Simulated intrusion also caused males and females to approach the speaker together and coordinate more of their vocalizations to form duets. Females did not engage in sex-specific territorial defence, responding equally strongly to playback of male and female song, and maintaining both territory and pair bond by attempting to exclude intruders of either sex. Males initiated more vocalizations in response to playback of male than female song, and their likelihood of duetting appeared to be related more to threats to the pair bond, in particular desertion by their partner. Copyright 2000 The Association for the Study of Animal Behaviour.