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1.
Pythons are harvested for the international leather industry and pet trade. We analyzed the CITES export records (1999–2008) of the most intensively commercialized wild pythons (Python regius, Python sebae, Python reticulatus, Python molurus, Python curtus species complex) from African and Asian countries where reliable data on trade rates and ecology are available. Mean declared annual numbers of exported pythons were 30,000 in five African countries and 164,000 in Indonesia. Trade intensity tripled in Indonesia over the last decade, but declined in Africa. African international trade is exclusively associated with the pet market (mainly United States and Europe), whereas Asian pythons are sold mostly for luxury leather, albeit more recently also for the pet trade. A negative correlation between the annual numbers of pythons traded in Africa vs. Asia suggests a rapid and recent shift of the pressure exerted on wild populations in the two main exporting continents. We also found a strong effect of the currency exchange rate (i.e., U.S.$/€, the currencies used by the major importing countries) on African python exports: when the cost per African python increased, importers relied increasingly on Asian providers for pet trade. Overall, our data indicate that Asian pythons (especially P. reticulatus) might be threatened due to the rapidly increasing pressure, whereas the decreasing international trade in African pythons is likely more sustainable. 相似文献
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Jill M. Shephard Rob Ogden Piotr Tryjanowski Ola Olsson Peter Galbusera 《Ecology and evolution》2013,3(15):4881-4895
European white stork are long considered to diverge to eastern and western migration pools as a result of independent overwintering flyways. In relatively recent times, the western and northern distribution has been subject to dramatic population declines and country‐specific extirpations. A number of independent reintroduction programs were started in the mid 1950s to bring storks back to historical ranges. Founder individuals were sourced opportunistically from the Eastern and Western European distributions and Algeria, leading to significant artificial mixing between eastern and western flyways. Here we use mitochondrial and microsatellite DNA to test the contention that prior to translocation, eastern and western flyways were genetically distinct. The data show a surprising lack of structure at any spatial or temporal scale suggesting that even though birds were moved between flyways, there is evidence of natural mixing prior to the onset of translocation activities. Overall a high retention of genetic diversity, high Nef, and an apparent absence of recent genetic bottleneck associated with early 20th century declines suggest that the species is well equipped to respond to future environmental pressures. 相似文献
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Abdolbaset Ghorbani Barbara Gravendeel Sugirthini Selliah Shahin Zarré Hugo de Boer 《Molecular ecology resources》2017,17(2):342-352
Tubers of terrestrial orchids are harvested and traded from the eastern Mediterranean to the Caspian Sea for the traditional product Salep. Overexploitation of wild populations and increased middle‐class prosperity have escalated prices for Salep, causing overharvesting, depletion of native populations and providing an incentive to expand harvesting to untapped areas in Iran. Limited morphological distinctiveness among traded Salep tubers renders species identification impossible, making it difficult to establish which species are targeted and affected the most. In this study, a reference database of 490 nrITS, trnL‐F spacer and matK sequences of 133 taxa was used to identify 150 individual tubers from 31 batches purchased in 12 cities in Iran to assess species diversity in commerce. The sequence reference database consisted of 211 nrITS, 158 trnL‐F and 121 matK sequences, including 238 new sequences from collections made for this study. The markers enabled unambiguous species identification with tree‐based methods for nrITS in 67% of the tested tubers, 58% for trnL‐F and 59% for matK. Species in the genera Orchis (34%), Anacamptis (27%) and Dactylorhiza (19%) were the most common in Salep. Our study shows that all tuberous orchid species in this area are threatened by this trade, and further stresses the urgency of controlling illegal harvesting and cross‐border trade of Salep tubers. 相似文献
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Genetic diversity is crucial for long‐term population persistence. Population loss and subsequent reduction in migration rate among the most important processes that are expected to lead to a reduction in genetic diversity and an increase in genetic differentiation. While the theory behind this is well‐developed, empirical evidence from wild populations is inconsistent. Using microsatellite markers, we compared the genetic structure of populations of an amphibian species, the midwife toad (Alytes obstetricans), in four Swiss regions where the species has suffered variable levels of subpopulation extirpation. We also quantified the effects of several geographic factors on genetic structure and used a model selection approach to ascertain which of the variables were important for explaining genetic variation. Although subpopulation pairwise FST‐values were highly significant even over small geographic scales, neither any of the geographic variables nor loss of subpopulations were important factors for predicting spatial genetic structure. The absence of a signature of subpopulation loss on genetic differentiation may suggest that midwife toad subpopulations function as relatively independent units. 相似文献
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Karine Berthier Madougou Garba Raphael Leblois Miguel Navascués Caroline Tatard Philippe Gauthier Sama Gagaré Sylvain Piry Carine Brouat Ambroise Dalecky Anne Loiseau Gauthier Dobigny 《Biological journal of the Linnean Society. Linnean Society of London》2016,119(4):748-765
Human population migrations, as well as long‐distance trade activities, have been responsible for the spread of many invasive organisms. The black rat, Rattus rattus, has colonized most of the world following ship‐mediated trade. Owing to its tight association with human infrastructures, this species has been able to survive in unfavourable environments, such as Sahelian Africa. In this work, we combined interview‐based and population genetic surveys to investigate the processes underlying the ongoing invasion of south‐western Niger by black rats, with special emphasis on the capital city, Niamey. Our trapping and interview data are quite congruent, and all together point towards a patchy, but rather widespread, current distribution of R. rattus. Genetic data strongly suggest that road network development for truck‐based commercial flow from/to international harbours located in neighbouring countries (Benin, Togo, and Nigeria) facilitates the passive dispersal of black rats over a long distance through unfavourable landscapes. Another potentially, more ancient, invasion route may be associated with boat transport along the Niger River. Human‐mediated dispersal thus probably allows the foundation of persisting populations within highly anthropized areas while population dynamics may be more unstable in remote areas and mostly depends on propagule pressure. 相似文献
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OLIVIER GNANKIN LAURENCE MOUTON HLNE HENRI GABRIEL TERRAZ THOMAS HOUNDET THIBAUD MARTIN FABRICE VAVRE FRDRIC FLEURY 《Insect Conservation and Diversity》2013,6(3):411-421
Abstract. 1. The whitefly Bemisia tabaci is a pest of many agricultural and ornamental crops worldwide and particularly in Africa. B. tabaci is a complex of more than 20 biotypes. Effective control of B. tabaci calls for a greater knowledge of the local biological diversity in terms of biotypes or putative species. Information is available about biotype distribution in Northern, Eastern, and Southern Africa, but data for Western Africa remain very scarce. At the time of this study, data were available for only three sampling sites in Burkina Faso, where three biotypes have been detected, the native Sub‐Saharan Africa non‐Silver Leafing (AnSL), the Sub‐Saharan Africa Silverleafing (ASL), and the Mediterranean Q biotypes, but no information is available about their respective distributions on host plant species ( Gueguen et al., 2010 ). 2. Our study describes the biotypes and symbiotic bacterial communities of B. tabaci sampled in three West African countries, Burkina Faso, Benin, and Togo. A total of 527 individuals were collected from seven cultivated host plants. 3. In the 20 localities studied, we found the same three biotypes AnSL, ASL, and Q previously detected in Burkina Faso. These biotypes display a specific pattern of geographical distribution influenced by the host plant species. In Benin and Togo, the ASL and AnSL biotypes were predominant, while in Burkina Faso, the Q biotype was dominant, with two sub‐groups, Q1 and Q3 (recorded to date only in this country), and ASL individuals found in sympatry with Q1 individuals in some localities. As previously reported, each biotype and each genetic group harbours a specific community of symbiotic bacteria. 相似文献
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Ángela María Mendoza María Fernanda Torres Andrea Paz Natalia Trujillo‐Arias Diana López‐Alvarez Socorro Sierra Fernando Forero Mailyn A. Gonzalez 《Molecular ecology resources》2016,16(4):862-873
Colombia is the country with the largest number of bird species worldwide, yet its avifauna is seriously threatened by habitat degradation and poaching. We built a DNA barcode library of nearly half of the bird species listed in the CITES appendices for Colombia, thereby constructing a species identification reference that will help in global efforts for controlling illegal species trade. We obtained the COI barcode sequence of 151 species based on 281 samples, representing 46% of CITES bird species registered for Colombia. The species analysed belong to nine families, where Trochilidae and Psittacidae are the most abundant ones. We sequenced for the first time the DNA barcode of 47 species, mainly hummingbirds endemic of the Northern Andes region. We found a correct match between morphological and genetic identification for 86–92% of the species analysed, depending on the cluster analysis performed (BIN, ABGD and TaxonDNA). Additionally, we identified eleven cases of high intraspecific divergence based on K2P genetic distances (up to 14.61%) that could reflect cryptic diversity. In these cases, the specimens were collected in geographically distant sites such as different mountain systems, opposite flanks of the mountain or different elevations. Likewise, we found two cases of possible hybridization and incomplete lineage sorting. This survey constitutes the first attempt to build the DNA barcode library of endangered bird species in Colombia establishing as a reference for management programs of illegal species trade, and providing major insights of phylogeographic structure that can guide future taxonomic research. 相似文献
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Katri Korpela Maria Delgado Heikki Henttonen Erkki Korpimäki Esa Koskela Otso Ovaskainen Hannu Pietiäinen Janne Sundell Nigel G Yoccoz Otso Huitu 《Global Change Biology》2013,19(3):697-710
Small rodents are key species in many ecosystems. In boreal and subarctic environments, their importance is heightened by pronounced multiannual population cycles. Alarmingly, the previously regular rodent cycles appear to be collapsing simultaneously in many areas. Climate change, particularly decreasing snow quality or quantity in winter, is hypothesized as a causal factor, but the evidence is contradictory. Reliable analysis of population dynamics and the influence of climate thereon necessitate spatially and temporally extensive data. We combined data on vole abundances and climate, collected at 33 locations throughout Finland from 1970 to 2011, to test the hypothesis that warming winters are causing a disappearance of multiannual vole cycles. We predicted that vole population dynamics exhibit geographic and temporal variation associated with variation in climate; reduced cyclicity should be observed when and where winter weather has become milder. We found that the temporal patterns in cyclicity varied between climatically different regions: a transient reduction in cycle amplitude in the coldest region, low‐amplitude cycles or irregular dynamics in the climatically intermediate regions, and strengthening cyclicity in the warmest region. Our results did not support the hypothesis that mild winters are uniformly leading to irregular dynamics in boreal vole populations. Long and cold winters were neither a prerequisite for high‐amplitude multiannual cycles, nor were mild winters with reduced snow cover associated with reduced winter growth rates. Population dynamics correlated more strongly with growing season than with winter conditions. Cyclicity was weakened by increasing growing season temperatures in the cold, but strengthened in the warm regions. High‐amplitude multiannual vole cycles emerge in two climatic regimes: a winter‐driven cycle in cold, and a summer‐driven cycle in warm climates. Finally, we show that geographic climatic gradients alone may not reliably predict biological responses to climate change. 相似文献
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Sidiki Konate Djidama Sirima Lankoande Ardjima Youssouf Sanou Emmanuel M. Hema B. Gustave Kabre John E. Fa Luca Luiselli Fabio Petrozzi 《African Journal of Ecology》2021,59(1):132-141
The waterbuck (Kobus ellipsiprymnus), though widespread throughout Africa, is suspected to be declining overall. Data on population numbers and structure are lacking for many parts of its range, especially in West Africa, where the subspecies defassa is found. The aim of the present study was to evaluate the abundance, distribution and attributes of waterbuck populations from the Nazinga Forest Reserve, southern Burkina Faso. We investigated waterbuck population trends in the park using transect data collected in 1985–2019. For the more detailed analyses of population structure and distribution of the animals, we used census data gathered during 2019. Most animals were adults (46.6%), and the sex ratio was heavily skewed towards females (5:1). Most animals were concentrated along the larger rivers. There was no influence of poacher activity on waterbuck distribution. In the long term (1985–2019), the population dynamics of waterbuck can be roughly divided into two main periods: a phase of population increase from 1985 to 2005, and one of ongoing population collapse from 2007 to 2019. Although the declining population trend was obvious, coefficients of determination were low indicating that the years explained poorly the number of individuals and the number of sightings obtained. Waterbuck numbers in the Nazinga Forest Reserve are declining, but we found no single reason to explain this trend. It is likely that a combination of factors, including global warming (increased aridity) and illegal activities such as poaching, is responsible. Because there are probably multiple reasons for the observed waterbuck population decline in our study area, we suggest that a multifaceted approach should be adopted in order to enhance the conservation status of the local waterbuck populations. 相似文献
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The genus Agapornis, or lovebirds, are popular pet parrots worldwide. Currently, breeders are dependent on pedigree records as a selection tool as no molecular parentage verification test is available for any of the nine species. The A. roseicollis reference genome was recently assembled. This was followed by the sequencing of the whole genomes of the parents of the reference genome individual at 30× coverage. The parents’ reads were mapped against the reference genome to identify SNPs. Over 1.6 million SNPs, shared between the parents, were discovered using the Genome Analysis Toolkit pipeline. SNPs were filtered to a panel of 480 SNPs based on Genome Analysis Toolkit parameters. The panel of 480 SNPs was genotyped in a population of 960 lovebirds across seven species. A panel of 262 SNPs was compiled that included SNPs successfully amplified across all species. The 262‐SNP panel was reduced based on the observed heterozygosity (HO) and minor allele frequency (MAF) values per SNP to include the lowest number of SNPs with the highest exclusion power for parentage verification. Two smaller panels consisting of 195 SNPs with MAF and HO values >0.1 and 40 SNPs with MAF and HO values >0.3, were constructed. The panels were verified using 43 families from different species with known relationships to evaluate the exclusion power of each panel. The 195 SNP panel with an average exclusion probability of 99.9% and MAF and HO values >0.1 was proposed as the routine Agapornis parentage verification panel. 相似文献
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Helen E. Roy Tim Adriaens Nick J. B. Isaac Marc Kenis Thierry Onkelinx Gilles San Martin Peter M. J. Brown Louis Hautier Remy Poland David B. Roy Richard Comont René Eschen Robert Frost Renate Zindel Johan Van Vlaenderen Oldřich Nedvěd Hans Peter Ravn Jean‐Claude Grégoire Jean‐Christophe de Biseau Dirk Maes 《Diversity & distributions》2012,18(7):717-725
Aim Invasive alien species (IAS) are recognized as major drivers of biodiversity loss, but few causal relationships between IAS and species declines have been documented. In this study, we compare the distribution (Belgium and Britain) and abundance (Belgium, Britain and Switzerland) of formerly common and widespread native ladybirds before and after the arrival of Harmonia axyridis, a globally rapidly expanding IAS. Location Europe Methods We used generalized linear mixed‐effects models (GLMMs) to assess the distribution trends of eight conspicuous and historically widespread and common species of ladybird within Belgium and Britain before and after the arrival of H. axyridis. The distribution data were collated largely through public participatory surveys but verified by a recognized expert. We also used GLMMs to model trends in the abundance of ladybirds using data collated through systematic surveys of deciduous trees in Belgium, Britain and Switzerland. Results Five (Belgium) and seven (Britain) of eight species studied show substantial declines attributable to the arrival of H. axyridis. Indeed, the two‐spot ladybird, Adalia bipunctata, declined by 30% (Belgium) and 44% (Britain) over 5 years after the arrival of H. axyridis. Trends in ladybird abundance revealed similar patterns of declines across three countries. Main conclusion Together, these analyses show H. axyridis to be displacing native ladybirds with high niche overlap, probably through predation and competition. This finding provides strong evidence of a causal link between the arrival of an IAS and decline in native biodiversity. Rapid biotic homogenization at the continental scale could impact on the resilience of ecosystems and severely diminish the services they deliver. 相似文献
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William R. Branch James Harvey Christian Kehlmaier Zoltán T. Nagy Hynek Prokop Pavel Široký Uwe Fritz 《Biological journal of the Linnean Society. Linnean Society of London》2016,117(2):305-321
Using up to 2117 bp of mitochondrial DNA and up to 2012 bp of nuclear DNA, we analysed phylogeographic differentiation of six widely distributed species of African hinged terrapins (Pelusios spp.) representing different habitat types. Two taxa each live in savannahs or in forests and mesic savannahs, respectively, and the remaining two species occur in intermediate habitats. The species living in forests and mesic savannahs do not enter dry savannahs, whereas the savannah species may occur in dry and wet savannahs and even in semi‐arid steppe regions. We found no obvious correlation between habitat type and phylogeographic pattern: one savannah species (P. rhodesianus) shows phylogeographic structure, i.e. pronounced genetic differences among geographically distinct populations, and the other (P. nanus) not. One species inhabiting forests and mesic savannahs (P. carinatus) has phylogeographic structure, the other (P. gabonensis) not. The same pattern is true for the two ecologically intermediate species, with phylogeographic structure present in P. castaneus and absent in P. chapini. Nuclear evidence suggests that the latter two taxa with abutting and partially overlapping ranges are distinct, while mtDNA is only weakly differentiated. Pelusios castaneus shows pronounced phylogeographic structure, which could reflect Pleistocene range interruptions correlated with the fluctuating forest cover in West and Central Africa. Our results do not support the recognition of an extinct subspecies of P. castaneus for the Seychelles. Pelusios carinatus contains two well supported clades, which are separated by the Congo River. This species is closely related to P. rhodesianus, a taxon consisting of two deeply divergent mitochondrial clades. One of these clades is paraphyletic with respect to P. carinatus, but the two clades of P. rhodesianus are not differentiated in the studied nuclear markers and, again, paraphyletic with respect to P. carinatus. Using mtDNA sequences from the type material of P. rhodesianus, we were able to allocate this name to one of the two clades. However, owing to the confusing relationships of P. rhodesianus and P. carinatus, we refrain from taxonomic decisions. 相似文献
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Panayiota Kotsakiozi Benjamin R. Evans Andrea Gloria‐Soria Basile Kamgang Martin Mayanja Julius Lutwama Gilbert Le Goff Diego Ayala Christophe Paupy Athanase Badolo Joao Pinto Carla A. Sousa Arlete D. Troco Jeffrey R. Powell 《Ecology and evolution》2018,8(16):7835-7848
Aedes aegypti, the major vector of dengue, yellow fever, chikungunya, and Zika viruses, remains of great medical and public health concern. There is little doubt that the ancestral home of the species is Africa. This mosquito invaded the New World 400‐500 years ago and later, Asia. However, little is known about the genetic structure and history of Ae. aegypti across Africa, as well as the possible origin(s) of the New World invasion. Here, we use ~17,000 genome‐wide single nucleotide polymorphisms (SNPs) to characterize a heretofore undocumented complex picture of this mosquito across its ancestral range in Africa. We find signatures of human‐assisted migrations, connectivity across long distances in sylvan populations, and of local admixture between domestic and sylvan populations. Finally, through a phylogenetic analysis combined with the genetic structure analyses, we suggest West Africa and especially Angola as the source of the New World's invasion, a scenario that fits well with the historic record of 16th‐century slave trade between Africa and Americas. 相似文献
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Thomas Hilker Enkhjargal Natsagdorj Richard H. Waring Alexei Lyapustin Yujie Wang 《Global Change Biology》2014,20(2):418-428
The Mongolian Steppe is one of the largest remaining grassland ecosystems. Recent studies have reported widespread decline of vegetation across the steppe and about 70% of this ecosystem is now considered degraded. Among the scientific community there has been an active debate about whether the observed degradation is related to climate, or over‐grazing, or both. Here, we employ a new atmospheric correction and cloud screening algorithm (MAIAC) to investigate trends in satellite observed vegetation phenology. We relate these trends to changes in climate and domestic animal populations. A series of harmonic functions is fitted to Moderate Resolution Imaging Spectroradiometer (MODIS) observed phenological curves to quantify seasonal and inter‐annual changes in vegetation. Our results show a widespread decline (of about 12% on average) in MODIS observed normalized difference vegetation index (NDVI) across the country but particularly in the transition zone between grassland and the Gobi desert, where recent decline was as much as 40% below the 2002 mean NDVI. While we found considerable regional differences in the causes of landscape degradation, about 80% of the decline in NDVI could be attributed to increase in livestock. Changes in precipitation were able to explain about 30% of degradation across the country as a whole but up to 50% in areas with denser vegetation cover (P < 0.05). Temperature changes, while significant, played only a minor role (r2 = 0.10, P < 0.05). Our results suggest that the cumulative effect of overgrazing is a primary contributor to the degradation of the Mongolian steppe and is at least partially responsible for desertification reported in previous studies. 相似文献
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Michael D. Martin Morten Tange Olsen Jose A. Samaniego Elizabeth A. Zimmer M. Thomas P. Gilbert 《Ecology and evolution》2016,6(11):3760-3771
Common ragweed (Ambrosia artemisiifolia L.) is an invasive, wind‐pollinated plant nearly ubiquitous in disturbed sites in its eastern North American native range and present across growing portions of Europe, Africa, Asia, and Australia. Phenotypic divergence between European and native‐range populations has been described as rapid evolution. However, a recent study demonstrated major human‐mediated shifts in ragweed genetic structure before introduction to Europe and suggested that native‐range genetic structure and local adaptation might fully explain accelerated growth and other invasive characteristics of introduced populations. Genomic differentiation that potentially influenced this structure has not yet been investigated, and it remains unclear whether substantial admixture during historical disturbance of the native range contributed to the development of invasiveness in introduced European ragweed populations. To investigate fine‐scale population genetic structure across the species' native range, we characterized diallelic SNP loci via a reduced‐representation genotyping‐by‐sequencing (GBS) approach. We corroborate phylogeographic domains previously discovered using traditional sequencing methods, while demonstrating increased power to resolve weak genetic structure in this highly admixed plant species. By identifying exome polymorphisms underlying genetic differentiation, we suggest that geographic differentiation of this important invasive species has occurred more often within pathways that regulate growth and response to defense and stress, which may be associated with survival in North America's diverse climatic regions. 相似文献
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Mark Allen Matthew H. Webb Fernanda Alves Robert Heinsohn Dejan Stojanovic 《Austral ecology》2018,43(4):470-475
Introduced mammals pose serious threats to native island fauna, and understanding their distribution is fundamental to evaluating their conservation impact. Introduced sugar gliders (Petaurus breviceps) are the main predator of critically endangered swift parrots (Lathamus discolor) on mainland Tasmania. We surveyed sugar glider occurrence over ~800 km2 in an important swift parrot breeding area, the Southern Forests. During 4–5 visits per site, we used call broadcast of predatory owls to elicit sugar glider alarm calls and surveyed 100 sites during February/March 2016. Naïve occupancy by sugar gliders was high (0.79), as was detectability (0.52 ± 0.03 SE), resulting in a cumulative detection probability of effectively 1. Occupancy modelling indicated a positive effect of the proportion of mature forest cover on occupancy. The best model, based on AIC scores, included the proportion of mature forest cover within a 500 m radius with constant detectability. Our study revealed surprisingly high rates of occupancy of available forest habitat throughout the heavily logged study area, such that even when mature forest cover was <10%, sugar glider occupancy was >0.5; where forest cover approached 100% (i.e. in the best quality breeding habitat for swift parrots), occupancy by sugar gliders approached 1. Our results reveal that sugar gliders are widespread across the study area which may be indicative of occupancy rates elsewhere in the breeding range of the critically endangered swift parrot. As a result, the risk of predation by sugar gliders for small birds may be widespread across logged Tasmanian forests. Additional work to identify whether population densities of sugar gliders vary with forest cover (and whether this may impact predation likelihood) is critical to understanding the conservation consequences of deforestation in the breeding range of the swift parrot. 相似文献
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Marlne Gamelon Stefan J. G. Vriend Steinar Engen Frank Adriaensen Andr A. Dhondt Simon R. Evans Erik Matthysen Ben C. Sheldon Bernt‐Erik Sther 《Ecology letters》2019,22(5):797-806
Understanding species coexistence has long been a major goal of ecology. Coexistence theory for two competing species posits that intraspecific density dependence should be stronger than interspecific density dependence. Great tits and blue tits are two bird species that compete for food resources and nesting cavities. On the basis of long‐term monitoring of these two competing species at sites across Europe, combining observational and manipulative approaches, we show that the strength of density regulation is similar for both species, and that individuals have contrasting abilities to compete depending on their age. For great tits, density regulation is driven mainly by intraspecific competition. In contrast, for blue tits, interspecific competition contributes as much as intraspecific competition, consistent with asymmetric competition between the two species. In addition, including age‐specific effects of intra‐ and interspecific competition in density‐dependence models improves predictions of fluctuations in population size by up to three times. 相似文献