Harvest-induced maturation evolution under different life-history trade-offs and harvesting regimes

The potential of harvesting to induce adaptive changes in exploited populations is now increasingly recognized. While early studies predicted that elevated mortalities among larger individuals select for reduced maturation size, recent theoretical studies have shown conditions under which other, more complex evolutionary responses to size-selective mortality are expected. These new predictions are based on the assumption that, owing to the trade-off between growth and reproduction, early maturation implies reduced growth. Here we extend these findings by analyzing a model of a harvested size-structured population in continuous time, and by systematically exploring maturation evolution under all three traditionally acknowledged costs of early maturation: reduced fecundity, reduced growth, and/or increased natural mortality. We further extend this analysis to the two main types of harvest selectivity, with an individual's chance of getting harvested depending on its size and/or maturity stage. Surprisingly, we find that harvesting mature individuals not only favors late maturation when the costs of early maturation are low, but promotes early maturation when the costs of early maturation are high. To our knowledge, this study therefore is the first to show that harvesting mature individuals can induce early maturation.     

Deterministic and stochastic regimes of asexual evolution on rugged fitness landscapes

We study the adaptation dynamics of an initially maladapted asexual population with genotypes represented by binary sequences of length L. The population evolves in a maximally rugged fitness landscape with a large number of local optima. We find that whether the evolutionary trajectory is deterministic or stochastic depends on the effective mutational distance d(eff) up to which the population can spread in genotype space. For d(eff) = L, the deterministic quasi-species theory operates while for d(eff) < 1, the evolution is completely stochastic. Between these two limiting cases, the dynamics are described by a local quasi-species theory below a crossover time T(x) while above T(x) the population gets trapped at a local fitness peak and manages to find a better peak via either stochastic tunneling or double mutations. In the stochastic regime d(eff) < 1, we identify two subregimes associated with clonal interference and uphill adaptive walks, respectively. We argue that our findings are relevant to the interpretation of evolution experiments with microbial populations.     

Mio-pliocene faunal exchanges and african biogeography: the record of fossil bovids

The development of the Ethiopian biogeographic realm since the late Miocene is here explored with the presentation and review of fossil evidence from eastern Africa. Prostrepsiceros cf. vinayaki and an unknown species of possible caprin affinity are described from the hominid-bearing Asa Koma and Kuseralee Members (～5.7 and ～5.2 Ma) of the Middle Awash, Ethiopia. The Middle Awash Prostrepsiceros cf. vinayaki constitutes the first record of this taxon from Africa, previously known from the Siwaliks and Arabia. The possible caprin joins a number of isolated records of caprin or caprin-like taxa recorded, but poorly understood, from the late Neogene of Africa. The identification of these two taxa from the Middle Awash prompts an overdue review of fossil bovids from the sub-Saharan African record that demonstrate Eurasian affinities, including the reduncin Kobus porrecticornis, and species of Tragoportax. The fossil bovid record provides evidence for greater biological continuity between Africa and Eurasia in the late Miocene and earliest Pliocene than is found later in time. In contrast, the early Pliocene (after 5 Ma) saw the loss of any significant proportions of Eurasian-related taxa, and the continental dominance of African-endemic taxa and lineages, a pattern that continues today.     

Inference of parasite local adaptation using two different fitness components

Estimating parasite fitness is central to studies aiming to understand parasite evolution. Theoretical models generally use the basic reproductive rate R(0) to express fitness, yet it is very difficult to quantify R(0) empirically and experimental studies often use fitness components such as infection intensity or infectivity as substitutes. These surrogate measures may be biased in several ways. We assessed local adaptation of the microsporidium Ordospora colligata to its host, the crustacean Daphnia magna using two different parasite fitness components: infection persistence over several host generations in experimental populations and infection intensity in individual hosts. We argue that infection persistence is a close estimator of R(0), whereas infection intensity measures only a component of it. Both measures show a pattern that is consistent with parasite local adaptation and they correlate positively. However, several inconsistencies between them suggest that infection intensity may at times provide an inadequate estimate of parasite fitness.     

Regulation of metabolic pathways in sulfobacilli under different aeration regimes

A comparative study of the activities of the enzymes of carbon metabolism from the cells of moderately thermophilic chemolithotrophic bacteria Sulfobacillus sibiricus (strains N1 and SSO) and Sulfobacillus thermosulfidooxidans subsp. asporogenes (strain 41) was carried out grown in a high layer of medium without forced aeration and cells grown with intense aeration. Limited air access to the growing S. sibiricus N1 cells resulted in switching from the pentose phosphate pathway of glucose metabolism to the Entner-Doudoroff pathway while the Embden-Meyerhof-Parnas pathway persisted. Irrespective of the level of the aeration, in the cells of S. sibiricus SSO and S. thermosulfidooxidans subsp. asporogenes 41, degradation of the glucose occurred via the Entner-Doudoroff and pentose phosphate metabolic pathways, respectively, as well as via the Embden-Meyerhof-Parnas pathway. Prolonged growth of S. sibiricus, strains N1 and SSO, in a high layer of the medium without forced aeration led to the repression of synthesis of most of the tricarboxylic acid cycle (TCA cycle) enzymes, in particular dehydrogenases, as well as of some carboxylases including RuBisCO. The traits of carbon metabolism in various strains of Sulfobacillus under conditions of oxygen deficiency are discussed.     

Cryopreservation ofTetraselmis suecica cultured under different nutrients regimes

The commercially important member of the PrasinophyceaeTetraselmis suecica CCAP 66/4, which is widely used in the aquaculture industry, can be cryopreserved with levels of post-thaw viability in excess of 65%. The nutritional mode which the alga uses appears to be of secondary importance to the cryoprotectant and cooling protocol used, to maximise survival. Glycerol was the least cytotoxic and most protective of the cryoprotectants employed and a cooling rate of 5 °C min^-1 to -30 °C with a 10-minute equilibration, followed by plunging into liquid nitrogen was found to give the highest levels of post-thaw viability.     

Phylogenetic structure of Brazilian savannas under different fire regimes

Questions: Fire is a strong filter in fire‐prone communities and is expected to assemble closely related species when functional traits are conserved in plant lineages. Do frequent fires assemble savannas with closely related species (phylogenetic clustering)? If so, what are the clades pruned by fire in the phylogenetic trees? Are species of semi‐deciduous seasonal forests, where fires are not frequent, less related than expected by chance (phylogenetic over‐dispersion)? Are life forms conserved in the phylogeny of the species? Location: Central and SE Brazilian savannas (Emas National Park, 18°18′S, 52°54′W; Brasília, 15°56′–15°57′S, 47°53′–47°56′W and Corumbataí‐Itirapina, 22°13′–22°15′S, 47°37′–47°39′W); and close semi‐deciduous seasonal forests (in Pirenópolis, 15°45′S, 49°04′W; Brasília, 15°33′S, 47°51′W; and São Carlos, 21°55′S, 47°48′W). Methods: We recorded woody species in savannas under different fire regimes and in semi‐deciduous seasonal forests. We obtained data from the literature and from field sampling. We compared mean phylogenetic distance of species of savanna and of nearby semi‐deciduous seasonal forest sites. We obtained significance by randomizing the species among the tips of phylogenetic trees. We also assessed whether life forms were evolutionary conserved across phylogeny of the studied plants (phylogenetic signal) with tests based on the variance of phylogenetic independent contrasts. Results: Some sites of savanna under high fire frequency were characterized by phylogenetic over‐dispersion of woody species whereas, in contrast, some sites of semi‐deciduous seasonal forest were characterized by phylogenetic clustering. We found phylogenetic signals in the traits across the phylogeny of the 801 species investigated. Conclusion: Fire may have different roles in assembling plant species in Brazilian savannas than in other fire‐prone communities. We postulate that the absence of phylogenetic clustering in the cerrado is mainly due to the persistence of long‐lived resprouting species from different plant lineages.     

Dynamics of pollen tube growth under different competition regimes

Pollen tube dynamics following different competition regimes were studied in sweet cherry (Prunus avium L.). In the process from pollination to fertilization, a constant reduction in the number of pollen tubes that travel along the style is observed. There could be two main causes of this reduction. One is a physical or physiological constraint consisting of the progressive decrease in the reserves and space available for pollen tube growth along the transmitting tissue of the style, and the other is genetic interaction both among the male gametophytes and between the male gametophytes and the female tissues of the flower. To evaluate the roles that these two forces play in reducing the number of pollen tubes that travel along the style, pistils were subjected to various pollen competition regimes by applying different mixtures of live and dead pollen onto the stigmata. The results obtained were similar when the experiment was repeated with different genotypes over 2 years, both in the laboratory and in the field. The role of stylar constriction is important, but it is not the only cause of pollen tube attrition because with low pollen loads fewer pollen tubes reach the different parts of the style than could fit therein. The fact that under different pollen competition regimes the number of pollen tubes is reduced by the same proportion in each stylar level indicates that genetic interactions play an important role in the control of pollen tube attrition.     

Tracing the evolution of amniote chromosomes

A great deal of diversity in chromosome number and arrangement is observed across the amniote phylogeny. Understanding how this diversity is generated is important for determining the role of chromosomal rearrangements in generating phenotypic variation and speciation. Gaining this understanding is achieved by reconstructing the ancestral genome arrangement based on comparisons of genome organization of extant species. Ancestral karyotypes for several amniote lineages have been reconstructed, mainly from cross-species chromosome painting data. The availability of anchored whole genome sequences for amniote species has increased the evolutionary depth and confidence of ancestral reconstructions from those made solely from chromosome painting data. Nonetheless, there are still several key lineages where the appropriate data required for ancestral reconstructions is lacking. This review highlights the progress that has been made towards understanding the chromosomal changes that have occurred during amniote evolution and the reconstruction of ancestral karyotypes.     

Cultivar variation in cotton photosynthetic performance under different temperature regimes

Cotton (Gossypium hirsutum L.) yields are impacted by overall photosynthetic production. Factors that influence crop photosynthesis are the plants genetic makeup and the environmental conditions. This study investigated cultivar variation in photosynthesis in the field conditions under both ambient and higher temperature. Six diverse cotton cultivars were grown in the field at Stoneville, MS under both an ambient and a high temperature regime during the 2006–2008 growing seasons. Mid-season leaf net photosynthetic rates (P_N) and dark-adapted chlorophyll fluorescence variable to maximal ratios (F_v/F_m) were determined on two leaves per plot. Temperature regimes did not have a significant effect on either P_N or F_v/F_m. In 2006, however, there was a significant cultivar × temperature interaction for P_N caused by PeeDee 3 having a lower P_N under the high temperature regime. Other cultivars’ P_N were not affected by temperature. FM 800BR cultivar consistently had a higher P_N across the years of the study. Despite demonstrating a higher leaf F_v/F_m, ST 5599BR exhibited a lower P_N than the other cultivars. Although genetic variability was detected in photosynthesis and heat tolerance, the differences found were probably too small and inconsistent to be useful for a breeding program.     

Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice

RNA viruses have high error rates, and the resulting quasispecies may aid survival of the virus population in the presence of selective pressure. Therefore, it has been theorized that RNA viruses require high error rates for survival, and that a virus with high fidelity would be less able to cope in complex environments. We previously isolated and characterized poliovirus with a mutation in the viral polymerase, 3D-G64S, which confers resistance to mutagenic nucleotide analogs via increased fidelity. The 3D-G64S virus was less pathogenic than wild-type virus in poliovirus-receptor transgenic mice, even though only slight growth defects were observed in tissue culture. To determine whether the high-fidelity phenotype of the 3D-G64S virus could decrease its fitness under a defined selective pressure, we compared growth of the 3D-G64S virus and 3D wild-type virus in the context of a revertible attenuating point mutation, 2C-F28S. Even with a 10-fold input advantage, the 3D-G64S virus was unable to compete with 3D wild-type virus in the context of the revertible attenuating mutation; however, in the context of a non-revertible version of the 2C-F28S attenuating mutation, 3D-G64S virus matched the replication of 3D wild-type virus. Therefore, the 3D-G64S high-fidelity phenotype reduced viral fitness under a defined selective pressure, making it likely that the reduced spread in murine tissue could be caused by the increased fidelity of the viral polymerase.     

Toxicity of nitrapyrin to sunflower under different N nutrition regimes

Summary The purpose of this study was to investigate the phytotoxicity of nitrapyrin 2-chloro-6-(trichloromethyl)pyridine to sunflower (Helianthus annuus L.) under different N regimes and to see if N forms affect the phytotoxicity of nitrapyrin. Sunflower was grown in pot culture for 21 days and was fertilized with (NH₄)₂SO₄, NH₄NO₃ and NaNO₃ to provide 0, 100 and 200 ppm N and with nitrapyrin application of 0 and 20 ppm. All N-treated sunflower plants in all N regimes and regardless of titrapyrin treatment produced more root and shoot dry weights and contained a significantly higher N than untreated check. Nitrapyrin toxicity appeared as a curling of leaf margin and a tendril type of stem growth, the visible toxicity symptoms decreased in the order: (NH₄)₂SO₄>NH₄NO₃>NaNO₃. Furthermore nitrapyrin addition suppressed sunflower growth in each N regime, the suppressing effect being greater with (NH₄)₂SO₄ and NH₄NO₃ than as with NaNO₃. Although, shoot growth from plants receiving nitrapyrin was not significantly affected by any N regime, root growth of nitrapyrin-treated plants was somewhat restricted by NH₄ ⁺−N nutrition relative to NO₃ ⁻−N nutrition.     

Daily variations in water relations of apricot trees under different irrigation regimes

Mature apricot (Prunus armeniaca L. cv. Búlida) trees, growing under field conditions, were submitted to two drip irrigation treatments: a control (T1), irrigated to 100 % of seasonal crop evapotranspiration (ETc), and a continuous deficit (T2), irrigated to 50 % of the control throughout the year. The behaviour of leaf water potential and its components, leaf conductance and net photosynthesis were studied at three different times during the growing season, when they revealed a diurnal and seasonal pattern in response to water stress, evaporative demand of the atmosphere and leaf age. The deficit-irrigated trees showed, among other effects, a pronounced decrease in leaf water potential (ψ_w), decreased in leaf conductance (g_s) and no osmotic adjustment. For this reason, g_l and ψ_w can be considered good indicators of mature apricot tree water status and can therefore be used for irrigation scheduling.     

Change in percentage ground cover of perennial grasses under different burning regimes

Summary Differences in the ground and perennial grass covers under different burning and grazing regimes are presented for three vegetation types in Kainji Lake National Park. It is shown from the results that perennial grasses established higher basal cover under late burning treatments than under early burning and no burning treatments. Late fires destroy litter which hinders grass growth while no burning treatments cause accumulation of litter. The highest number of grass tillers are produced under late burning treatments, while the lowest occurred under no burning treatments. The early burning plots have intermediate results. Occasional late burning in controlled small blocks of land is recommended for optimum grass production in the study area.Nomenclature follows Hutchinson & Dalziel 1954–1972. Flora of West Tropical Africa 2nd ed., edited by R.W.J. Keay & F.N. Hepper, Crown Agents, London.I am most grateful to Kainji Lake Research Institute for giving me great moral and financial support during the course of field work for this study. I am also very grateful to Dr. S.S. Ajayi of the Department of Forest Resources Management for allowing me to use part of his Senate Research Grant for the study.     

Patterns of plant species diversity during succession under different disturbance regimes

Summary I suggest that between-community variations in diversity patterns during succession in plant communities are due to the effects of selection on life history strategies under different disturbance regimes. Natural disturbances to plant communities are simultaneously a source of mortality for some individuals and a source of establishment sites for others. The plant community consists of a mosaic of disturbance patches (gaps) of different environmental conditions. The composition of the mosaic is described by the size-frequency distribution of the gaps and is dependent on the rates and scales of disturbance. The life-history strategies of plant species dependent on some form of disturbance for establishment of propagules should reflect this size-frequency distribution of disturbance patches. An extension of island biogeographic theory to encompass relative habitat area predicts that a community should be most rich in species adapted to growth and establishment in the spatially most common patch types. Changes in species diversity during succession following large scale disturbance reflect the prevalent life history patterns under historically common disturbance regimes. Communities in which the greatest patch area is in large-scale clearings (e.g. following fire) are most diverse in species establishing seedlings in xeric, high light conditions. Species diversity decreases during succession. Communities in which such large patches are rare are characterized by a large number of species that reach the canopy through small gaps and realtively few which regenerate in the large clearings. Diversity increases during succession following a large scale disturbance.Evidence from communities characterized by different disturbance regimes is summarized from the literature. This hypothesis provides an evolutionary mechanism with which to examine the changes in plant community structure during succession. Diversity peaks occurring at intermediate levels of disturbance as discussed by Connell and Huston are interpreted in this context.     

Spatial patterns of Mexican pine-oak forests under different recent fire regimes

Patterns of spatial arrangement, tree density, and species composition were compared in three unharvested pine-oak forests under different recent fire regimes: (1) an uninterrupted frequent fire regime, (2) fire exclusion, and (3) fire exclusion followed by the return of fire. Regeneration was dense and highly aggregated at all sites but the frequent-fire overstory was random to uniform in spatial distribution and relatively open while the fire-excluded sites had clumped overstory trees with a high density of smaller trees. Dominance by sprouting species was greatest at the fire-excluded sites. Mortality was spatially aggregated at all sites, consistent both with thinning by fire and density-dependent mortality, but competitive self-thinning appeared insufficient to counteract the increased tree density without fire. The return of fire after 29 years of exclusion reduced tree density but left overstory trees aggregated and led to vigorous oak and alder sprouting. Frequent fire disturbance is considered essential to maintain open pine forests; fire exclusion with or without subsequent fire appears to lead to denser forests dominated by smaller trees of sprouting species.     

Rapid molecular evolution in a living fossil

The tuatara of New Zealand is a unique reptile that coexisted with dinosaurs and has changed little morphologically from its Cretaceous relatives. Tuatara have very slow metabolic and growth rates, long generation times and slow rates of reproduction. This suggests that the species is likely to exhibit a very slow rate of molecular evolution. Our analysis of ancient and modern tuatara DNA shows that, surprisingly, tuatara have the highest rate of molecular change recorded in vertebrates. Our work also suggests that rates of neutral molecular and phenotypic evolution are decoupled.     

Evaluation of fitness components in strains of Drosophila mulleri carrying different genotypes for an esterase

Several fitness components in strains of Drosophila mulleri carrying the slow or the fast alleles for the major beta esterase (esterase-4) found in this species, as well as in heterozygous flies in which the slow or fast alleles came from one of the parents, were evaluated. Twelve components were analysed including longevity of both virgins and mated males and females, productivity, viability, including the egg-larva, egg-pupa, egg-imago and pupa-imago periods. These parameters were used to estimate the total fitness for each genotype. The best score was reached by individuals having the Est-4S/Est-4S genotype (scored at 1.000), followed by a fitness value of 0.892 presented by the Est-4F/Est-4S genotype (with the fast allele from maternal origin), 0.863 for the Est-4F/Est-4F and 0.842 for the Est-4S/Est-4Fgenotypes (with Est-4F of maternal origin). These results suggested a higher relative adaptability of the Est-4S/Est-4S genotype followed by the Est-4F/Est-4S hybrid that possessed the allele Est-4S of maternal origin, which was incompatible with predictions of neutral polymorphism.