50 Years of poly(ADP-ribosyl)ation

The seminal paper published in 1963 by Chambon, Weil and Mandel reporting a new NAD-dependent protein modification now known as poly(ADP-ribosyl)ation (PARylation) marked the launch of a new era in both protein research and cell biology. In the coming decades, the identity, biochemical characteristics and regulation of enzymes responsible for the synthesis and degradation of protein-bound poly(ADP-ribose) have been discovered and the surprisingly multifarious biological roles of PARylation have not ceased to amaze cell and molecular biologists ever since. The review series on PARylation following this preface is comprised of ten papers written by great experts of the field and aims to provide practicing physicians and basic scientists with the state-of-the-art on the “writers, readers and erasers” of poly(ADP-ribose), some recent paradigm shifts of the field and its translational potential.     

Species-specific oligonucleotide probes for macroalgae: molecular discrimination of two marine fouling species of Enteromorpha (Ulvophyceae)

The green seaweeds Enteromorpha intestinalis and E. compressa are important fouling organisms commonly found in polluted and nutrient-enriched marine and brackish water habitats, where they are used in environmental monitoring. Discrimination of the two species is extremely difficult because of overlapping morphological characters. In this study a quick molecular method for species identification was developed based on the nuclear rDNA ITS2 sequence data of 54 E. intestinalis samples and 20 E. compressa samples from a wide geographical range. Oligonucleotide probes were designed for species-specific hybridization to dot-blots of the PCR-amplified ITS1, 5.8S gene and ITS2 fragment of both E. intestinalis and E. compressa. Specificity of the oligonucleotide probes was confirmed by tests with taxonomically diverse species that could morphologically be confused with E. intestinalis or E. compressa. This is the first use of species-specific probes for macroalgae. The restriction endonuclease NruI digested specifically the amplified PCR product from E. compressa into two fragments detectable on agarose gels, but no suitable restriction sites were identifiable in the PCR product of E. intestinalis.     

A “directed” approach toward a cationic molecular square containing four isonicotinamidate ligands and (4 + 2) (en)Pt metal entities

The use of 4-cyanopyridine (4-CNpy) and 3-cyanopyridine (3-CNpy) as ditopic ligands with 180° and 120° directionalities, respectively, for the construction of molecular architectures with the 90° metal fragments (en)Pt^II and (en)Pd^II in water is hampered by the ease with which these ligands undergo hydrolysis to isonicotinamide (4-C(O)NH₂py) and nicotinamide (3-C(O)NH₂py). As described in this article, out of six X-ray structurally characterized complexes (1-6), only a single one (1) reveal coordination of the unchanged ligand (4-CNpy) to (en)Pt^II. Nevertheless also the hydrolysis products are of interest in the context of obtaining discrete metallacyclic compounds: Thus, (en)Pt^II and 4-C(O)NH₂py form a hexanuclear complex, [PF₆⊂{(en)Pt}₆(4-C(O)NHpy)₄](NO₃)₇·10H₂O (2), in which the anionic isonicotinamidate ligands function as tridentate, bridging ligands to produce a hybrid between a metallasquare and a 2-floor open box. The resulting cation with a +8 charge accommodates a single hexafluorophosphate anion in its interior. Adjacent cations of 2 pack in such a way as to develop Pt₄ chains as typically seen in “platinum blues” and their [Pt^II]₄ precursors.     

Meso-[{Ru(phen)2}2(μ-bpm)]: A high-affinity DNA bulge probe {bpm = 2,2′-bipyrimidine; phen = 1,10-phenanthroline}

The binding of the stereoisomers of [{Ru(Me₂bpy)₂}₂(μ-bpm)]⁴⁺, [{Ru(phen)₂}₂(μ-bpm)]⁴⁺ and [{Ru(Me₂phen)₂}₂(μ-bpm)]⁴⁺ (Me₂bpy = 4,4′-dimethyl-2,2′-bipyridine; bpm = 2,2′-bipyrimidine; phen = 1,10-phenanthroline; Me₂phen = 4,7-dimethyl-1,10-phenanthroline) to a tridecanucleotide d(CCGAGAATTCCGG)₂ which contains a single adenine bulge site, and four control dodecanucleotides, have been studied using a fluorescence intercalator displacement (FID) assay. The meso isomer of [{Ru(phen)₂}₂(μ-bpm)]⁴⁺ showed the strongest binding to the bulge-containing tridecanucleotide. In order to gain a greater understanding of the basis of the higher affinity exhibited by the meso isomer towards the bulge sequence, a ¹H NMR study of the binding of the two enantiomers (ΔΔ and ΛΛ) of rac-[{Ru(phen)₂}₂(μ-bpm)]⁴⁺, and the, meso (ΔΛ) diastereoisomer, to the tridecanucleotide d(CCGAGAATTCCGG)₂ was carried out. The NMR results suggest that the meso isomer binds selectively at the bulge site in the tridecanucleotide minor groove, but closer to the 3′-direction and with less structural perturbations of the groove than the ΔΔ and ΛΛ isomers. The results of this study confirm that dinuclear ruthenium complexes have excellent potential as DNA bulge probes, and meso-[{Ru(phen)₂}₂(μ-bpm)]⁴⁺ in particular has a high affinity (1 × 10⁶ M⁻¹) and selectivity for a single adenine bulge site.     

Prenatal diagnosis and molecular cytogenetic characterization of de novo partial trisomy 12q (12q24.21 → qter) and partial monosomy 6q (6q27 → qter) associated with coarctation of the aorta,ventriculomegaly and thickened nuchal fold

We present rapid aneuploidy diagnosis of de novo partial trisomy 12q (12q24.21 → qter) and partial monosomy 6q (6q27 → qter) by aCGH using uncultured amniocytes in a fetus with coarctation of the aorta, ventriculomegaly and thickened nuchal fold. We discuss the association of TBX3, TBX5 and MED13L gene duplication with coarctation of the aorta, and the association of RNASET2 gene haploinsufficiency with ventriculomegaly in this case.     

Copper-thioarylazoimidazole complexes: Structures, photochromism and redox interconversion between Cu(II) ↔ Cu(I) and correlation with DFT calculation

Reaction of Cu(ClO₄)₂·6H₂O, SRaaiNR′ (1-alkyl-2-[(o-thioalkyl)phenylazo]imidazole) and NH₄SCN (1:1:2 mol ratio) affords distorted square pyramidal, [Cu^II(SRaaiNR′)(SCN)₂] (3) compound while identical reaction with [Cu(MeCN)₄](ClO₄) yields -SCN- bridged coordination polymer, [Cu^I(SRaaiNR′)(SCN)]_n (4). These two redox states [Cu^II and Cu^I] are interconvertible; reduction of [Cu^II(SRaaiNR′)(SCN)₂] by ascorbic acid yields [Cu^I(SRaaiNR′)(SCN)]_n while the oxidation of [Cu^I(SRaaiNR′)(SCN)]_n by H₂O₂ in presence of excess NH₄SCN affords [Cu^II(SRaaiNR′)(SCN)₂]. They are structurally confirmed by single crystal X-ray diffraction study. Cyclic voltammogram of the complexes show Cu(II)/Cu(I) redox couple at ∼0.4 V and azo reductions at negative to SCE. UV light irradiation in MeCN solution of [Cu^I(SRaaiNR′)(SCN)]_n (4) show trans-to-cis isomerisation of coordinated azoimidazole. The reverse transformation, cis-to-trans, is very slow with visible light irradiation while the process is thermally accessible. Quantum yields (?_t→c) of trans-to-cis isomerisation are calculated and free ligands show higher ? than their Cu(I) complexes. The activation energy (E_a) of cis-to-trans isomerisation is calculated by controlled temperature experiment. Copper(II) complexes, 3, do not show photochromism. DFT and TDDFT calculation of representative complexes have been used to determine the composition and energy of molecular levels and results have been used to explain the solution spectra, photochromism and redox properties of the complexes.     

Optical properties of Ag(tripod)X with tripod = 1,1,1-tris(diphenyl-phosphinomethyl)ethane and X = Cl and I: Intraligand and ligand-to-ligand charge transfer

The complexes Ag^I(tripod)X with tripod = 1,1,1-tris(diphenylphosphinomethyl)ethane and X⁻ = Cl⁻ and I⁻ are luminescent in solution at r.t. It is suggested that the emission is a phosphorescence which originates from a tripod intraligand state for X = Cl (λ_max = 464 nm) and a X⁻ → tripod ligand-to-ligand charge transfer state for X = I (λ_max = 482 nm).     

Thiodiacetato-copper(II) chelates with or without N-heterocyclic donor ligands: molecular and/or crystal structures of [Cu(tda)]n, [Cu(tda)(Him)2(H2O)] and [Cu(tda)(5Mphen)] · 2H2O (Him = imidazole, 5Mphen = 5-methyl-1,10-phenanthroline)

Three new thiodiacetato-Cu(II) chelates have been synthesized and studied by X-ray crystallography and by thermal, spectral and magnetic methods. [Cu(tda)]_n (1) is a 3D-polymer with a pentadentate tda, which acts with a fac-O₂ + S(apical)-tridentate chelating conformation and as a twofold anti, syn-μ-η¹:η¹ carboxylate bridge. In its square pyramidal Cu(II) coordination (type 4 + 1) four O(carboxylate) donors define a close regular square base, but the Cu-S(apical) bond deviates 27.4° from the perpendicular to the mean basal plane. Each anti,syn-bridging carboxylate group exhibits two C-O (average 1.26(1) Å) and two Cu-O bonds (average 1.958(7) Å), which are very similar in length to each other. In contrast, the mixed-ligand complexes of [Cu(tda)(Him)₂(H₂O)] (compound 2, distorted octahedral, type 4 + 1 + 1) and [Cu(tda)(5Mphen)] · 2H₂O (compound 3, distorted square pyramidal, type 4 + 1) have molecular structures and the tda ligand displays only a fac-O₂ + S(apical)-tridentate conformation. The Cu-S(apical) bond lengths (2.570(1), 2.623(1) or 2.573(1) Å for 1, 2 or 3, respectively) are shorter than those previously reported for closely related Cu(II)-tda derivatives. The different tda ligand roles in their Cu(II) derivatives are rationalized on the basis of crystal packing forces driving in the absence or presence of auxiliary ligands (with two or three N-donor atoms).     

Self assembly of a Fe(L) complex with octacyano metallates [M(CN)8] (L = pentadentate macrocyclic ligand, M = Mo, W): Crystal structure and magnetic properties

The self assembly of [Fe^III(L)]Cl₂ClO₄ (L = pentadentate macrocyclic ligand) with octacyano metallates [M^IV(CN)₈]⁴⁻ (M = Mo, W) leads to bimetallic cyano-bridged 2-D coordination polymers of formula [{Fe(L)}₃{M(CN)₈}₂]Cl·xH₂O with M = Mo (2), or W (3). The structure of the tungsten analogue has been established by single crystal X-ray diffraction. The magnetic properties for both Mo and W derivative are reported.     

Kinetic study of dissociation of Eu(III) complex with H8dotp (H8dotp = 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrakis(methylphosphonic acid))

The dissociation kinetics of the europium(III) complex with H₈dotp ligand was studied by means of molecular absorption spectroscopy in UV region at ionic strength 3.0 mol dm⁻³ (Na,H)ClO₄ and in temperature region 25-60 °C. Time-resolved laser-induced fluorescence spectroscopy (TRLIFS) was employed in order to determine the number of water molecules in the first coordination sphere of the europium(III) reaction intermediates and the final products. This technique was also utilized to deduce the composition of reaction intermediates in course of dissociation reaction simultaneously with calculation of rate constants and it demonstrates the elucidation of intimate reaction mechanism. The thermodynamic parameters for the formation of kinetic intermediate (ΔH⁰ = 11 ± 3 kJ mol⁻¹, ΔS⁰ = 41 ± 11 J K⁻¹ mol⁻¹) and the activation parameters (E_a = 69 ± 8 kJ mol⁻¹, ΔH^≠ = 67 ± 8 kJ mol⁻¹, ΔS^≠ = −83 ± 24 J K⁻¹ mol⁻¹) for the rate-determining step describing the complex dissociation were determined. The mechanism of proton-assisted reaction was proposed on the basis of the experimental data.     

Influence of the linker length on the host-guest properties of alkoxy- and polypyridine-bridged molecular rectangles of formulae {[Re(CO)3(OC5H11)]4(L)2}, with L = 4-pyridinealdazine and 4,4′-azobis(pyridine)

A new series of alkoxy- and polypyridine-bridged rhenium molecular rectangles of formulae {[Re(CO)₃(OC₅H₁₁)]₄(L)₂}, with OC₅H₁₁ = 1-pentoxy, L = PCA (4-pyridinecarboxaldehyde azine) and 4,4′-azpy (4,4′-azobis(pyridine)), were synthesized and characterized by spectroscopic and diffraction techniques. Quenching of fluorescence of aromatic hydrocarbons by these complexes was studied by stationary and dynamic techniques. The quenching mechanism proved to be predominantly static and the Stern-Volmer constants indicated a decrease of the extent of C-H?π interactions with decreasing length of the linkers that form the molecular rectangles.     

Acid-base behavior of a simple metal bis(dithiolate) system: Synthesis, crystal structure and spectroscopy of [Bu4N]2[M(ppdt)2] (M = Ni, Pt; ppdt = pyrido[2,3-b]pyrazine-2,3-dithiolate)

The syntheses, crystal structures and properties of compounds [Bu₄N]₂[Ni(ppdt)₂] (1) and [Bu₄N]₂[Pt(ppdt)₂] (2) (ppdt = pyrido[2,3-b]pyrazine-2,3-dithiolate) have been described. Compound 1 crystallizes in P2₁/c space group (monoclinic system), whereas compound 2 crystallizes in C2/c space group (monoclinic system). The crystal structures of both compounds 1 and 2 have been characterized by C-H?S and C-H?N hydrogen bonding interactions between cation and anions resulting in three-dimensional supramolecular networks in the crystals of 1 and 2, respectively. The acid-base behavior of the ground states of both [Bu₄N]₂[Ni(ppdt)₂] (1) and [Bu₄N]₂[Pt(ppdt)₂] (2) and also the excited state of compound [Bu₄N]₂[Pt(ppdt)₂] (2) in solutions has been studied. The pH dependent changes in the charge transfer absorption and emission spectra are attributed to the protonation on an imine nitrogen of the ppdt ligand. The ground-state basicity constants of the two complexes 1 and 2 have been determined from spectrophotometric analysis by titrating with an weak acid, yielding pK_b1 = 8.0 for complex [Bu₄N]₂[Ni(ppdt)₂] (1) and pK_b1 = 7.8 for complex [Bu₄N]₂[Pt(ppdt)₂] (2). The excited-state basicity constant pK_b1^* for complex [Bu₄N]₂[Pt(ppdt)₂] (2) has been determined by a thermodynamic equation using a Förster analysis yielding the value of 1.8. The complex 2 is electrochemically irreversible with an oxidation potential of E_1/2 = +0.41 V versus Ag/AgCl in methanol.     

Assembly of metal coordination framework, [M(C5O5)(dpe)], with a 2D bi-layer architecture: Thermal stability and magnetic properties (M = Mn, Fe, Cd and Co; dpe = 1,2-bis(4-pyridyl)ethane)

A series of coordination polymers, [M(C₅O₅)(dpe)] (M = Mn 1, Fe 2, Cd 3 and Co 4; dpe = 1,2-bis(4-pyridyl)ethane) with a 2D metal-organic framework (MOF) has been synthesized and characterized by single-crystal X-ray diffraction studies. Structural determination reveals that compounds 1-4 are isostructural and possess a 2D brick-wall-like layered framework with a rectangle grid as the basic building unit through the connectivity of metal ions with μ₃-, μ₄-croconates and anti-dpe ligands. Two 2D layers are then cross-linkaged by gauche-dpe ligands to complete a 2D bi-layered MOF and then extended to a 3D supramolecular architecture through π-π and C-H?O interactions between the croconate and pyridyl rings of dpe, which exhibit high thermo-stability and keep their crystalline forms up to 350 °C. The magnetic exchange coupling between the metal centers for compounds 1, 2 and 4 was analyzed and based on the Curie-Weiss expression and a binuclear magnetic model. The negative values of the Weiss constant and the magnetic exchange coupling constant indicate the antiferromagnetic nature between the metal ions via the bridges of bis-bidentate adjacent μ₃-croconate ligands.     

Octahedral rhenium cluster complexes with organic ligands: Synthesis, structure and properties of [Re6Q8(3,5-Me2PzH)6]Br2 · 2(3,5-Me2PzH) (Q = S, Se)

Two new octahedral cluster complexes - [Re₆S₈(3,5-Me₂PzH)₆]Br₂ · 2(3,5-Me₂PzH) (1) and [Re₆Se₈(3,5-Me₂PzH)₆]Br₂ · 2(3,5-Me₂PzH) (2), where 3,5-Me₂PzH is 3,5-dimethylpyrazole, have been synthesized using reaction of rhenium chalcobromide complexes Cs₄[Re₆S₈Br₆] · 2H₂O and Cs₃[Re₆Se₈Br₆] · H₂O, respectively, with molten 3,5-dimethylpyrazole. Both compounds synthesized were characterized by X-ray single-crystal diffraction and chemical analysis, IR and luminescent spectra.     

A nearly symmetric trinuclear chromium(III) oxo carboxylate assembly: preparation, molecular and crystal structure, and magnetic properties of [Cr3O(O2CPh)6(MeOH)3](NO3) · 2MeOH

Complex [Cr₃O(O₂CPh)₆(MeOH)₃](NO₃) · 2MeOH (1 · 2MeOH) has been synthesized from the one-pot reaction between Cr(NO₃)₃ · 9H₂O and NaO₂CPh in MeOH. The structure of the complex has been solved by single-crystal X-ray crystallography. It crystallizes in the monoclinic space group P2₁/n with a=14.716(6) Å, b=22.569(8) Å, c=15.755(6) Å, β=95.02(1)°, V=5212.5(4) ų and Z=4. Although the cation does not possess any crystallographically imposed symmetry element, its {Cr₃(μ₃-O)} core is nearly symmetric. Each Cr^III…Cr^III vector is further bridged by two η¹:η¹:μ₂ benzoates, with a terminal MeOH molecule completing octahedral coordination at each metal ion. The crystal structure consists of layers that are parallel to (0 1 0) crystallographic plane and are formed through π-π stacking interactions and hydrogen bonds. Variable-temperature magnetic susceptibility and solid-state ¹H NMR studies indicate that the total spin value of the ground state is 1/2. EPR experiments reveal the existence of a distribution of trimers with axial anisotropy in the g tensor.     

Searching for switchable molecular conductors: Salts of [M(dcbdt)2] (M = Ni, Au) anions with [Fe(sal2-trien)] and [Fe(phen)3]

Salts of [Fe^III(sal₂-trien)]⁺and [Fe^II(phen)₃]²⁺ cations and M[(dcbdt)₂]⁻ anions with M = Ni and Au (dcbdt = dicyanobenzenedithiolate) with formula [Fe(sal₂-trien)] [M(dcbdt)₂] and [Fe(phen)₃] [M(dcbdt)₂]₂ were obtained and characterized by single X-ray diffraction and magnetic measurements. None of these salts shows a clear spin crossover behaviour and their magnetic properties are due essentially to the cations in a high spin S = 5/2 and low spin states for the Fe^III and Fe^II salts respectively. The magnetic Ni sublattices in both compounds appear to have a negligible direct contribution to the magnetization but enhance the AF interactions in the cation sublattice.     

Synthesis and structural characterization of adducts of silver(I) nitrate with ER3 (E = P, As, Sb; R = Ph, cy, o-tolyl, mes) and oligodentate aromatic bases derivative of 2,2′-bipyridyl, L, AgNO3:ER3:L (1:1:1)

Twenty-one adducts of the form AgNO₃:ER₃:L (1:1:1) (E = P, As, Sb; R = Ph, cy, o-tolyl, mes; L = 2,2′-bipyridyl (‘bpy’)-based ligand), together with AgNO₃:Pcy₃:tpy (2:2:1) and AgNO₃:PPh₃:tpy (1:2:1) (‘tpy’ ≡ (2,2′:6,2″-terpyridine)), have been synthesized and characterized by analytical, spectroscopic (IR, far-IR, ¹H and ³¹P NMR) and single crystal X-ray diffraction studies. The resulting complexes are predominantly of the form , with trigonal EAgN₂ coordination environments, the planarity of which is perturbed by the approach of the nitrate anion. The nitrate ion shows uni- or (semi-)bidentate coordination, excepting the complex AgNO₃:P(o-tol)₃:dpca (1:1:1) (dpca = bis(2-picolyl)amine) where the anion is uncoordinated, the donor dpca being a pincer-tridentate. The complex AgNO₃:Pcy₃:tpy (2:2:1), also reported, is dinuclear with a bridging unidentate nitrate and a terpyridine, the latter bridging through its central ring, with the peripheral rings forming chelates to either side, whereas the complex AgNO₃:PPh₃:tpy (1:2:1) is ionic with a five-coordinate silver, bonded to tridentate tpy and two phosphines.     

Oxo-bridged bis oxo-vanadium(V) complexes with tridentate Schiff base ligands (VOL)2O (L = SAE, SAMP, SAP): Synthesis, structure and epoxidation catalysis under solvent-free conditions

The dinuclear V(V) complexes (VOL)₂O (L = SAE (1), SAMP (2), SAP (3)) have been synthesized from VO(acac)₂ and the corresponding tridentate ligands LH₂ in methanol under reflux conditions and subsequent air oxidation in organic solvent. They have been characterized by IR and NMR spectroscopy, by thermogravimetric analysis, and by single crystal X-ray diffraction for 1 and 2. DFT calculations were carried out for a better understanding of the vibrational pattern, principally the V-O related vibrations. Complex [VO(SAP)]₂O (3) catalyzes the epoxidation of cyclooctene by TBHP in water in the absence of any added solvent with good selectivity.     

Inhibitory evaluation of Curculigo latifolia on α-glucosidase,DPP (IV) and in vitro studies in antidiabetic with molecular docking relevance to type 2 diabetes mellitus

The inhibition of α-glucosidase and DPP enzymes capable of effectively reducing blood glucose level in the management of type 2 diabetes. The purpose of the present study is to evaluate the inhibitory potential of α-glucosidase and DPP (IV) activity including with the 2-NBDG uptake assay and insulin secretion activities through in vitro studies. The selected of active compounds obtained from the screening of compounds by LC-MS were docked with the targeted enzyme that involved in the mechanism of T2DM. From the results, root extracts displayed a better promising outcome in α-glucosidase (IC₅₀ 2.72 ± 0.32) as compared with the fruit extracts (IC₅₀ 3.87 ± 0.32). Besides, root extracts also displayed a better activity in the inhibition of DPP (IV), enhance insulin secretion and glucose uptake activity. Molecular docking results revealing that phlorizin binds strongly with α-glucosidase, DPP (IV) and Insulin receptor (IR) enzymes with achieving the lowest binding energy value. The present work suggests several of the compounds have the potential that contribute towards inhibiting α-glucosidase and DPP (IV) and thus effective in lowering post-prandial hyperglycaemia.