The impact of molecular systematics on hypotheses for the evolution of root nodule symbioses and implications for expanding symbioses to new host plant genera

Current taxonomic schemes place plants that can participate in root nodule symbioses among disparate groups of angiosperms. According to the classification scheme of Cronquist (1981) which is based primarily on the analysis of morphological characters, host plants of rhizobial symbionts are placed in subclasses Rosidae and Hamamelidae, and those of Frankia are distributed among subclasses Rosidae, Hamamelidae, Magnoliidae and Dilleniidae. This broad phylogenetic distribution of nodulated plants has engendered the notion that nitrogen fixing endosymbionts, particularly those of actinorhizal plants, can interact with a very broad range of unrelated host plant genotypes. New angiosperm phylogenies based on DNA sequence comparisons reveal a markedly different relationship among nodulated plants and indicate that they form a more coherent group than has previously been thought (Chase et al., 1993; Swensen et al., 1994; Soltis et al., 1995). Molecular data support a single origin of the predisposition for root nodule symbiosis (Soltis et al., 1995) and at the same time support the occurrence of multiple origins of symbiosis within this group (Doyle, 1994; Swensen, 1996; Swensen and Mullin, In Press).     

Chromosome-banding study in Gerbillinae (Rodentia). I. Comparative analysis of Gerbillus poecilops, G. henleyi and G. nanus

An analysis was made of the R- and C-banding of chromosomes of the following Gerbillus species (Rodentia, Gerbillidae): G. poecilops (Taif, Saudi Arabia), G. henleyi (Oursi, Burkina Faso; Kairouan, Tunisia), and G. nanus (Taif and Hofuf, Saudi Arabia; Sind desert, Pakistan). Their karyotypes show the same chromosome number (2n = 52), but a different N.F.a. (number of autosomal arms), ranging from 58 to 62 in the species overall, and from 58 to 60 among G. nanus forms, due to pericentric inversions involving chromosomes 1 and 4. Moreover, large inter-individual variations of heterochromatin segments of chromosomes 25, X, and Y were found. Considering morphology and karyotype, G. poecilops and G. henleyi appear to be rather monomorphous species, whereas G. nanus produces a series of forms as a consequence of speciation, in which both chromosomal and morphological differentiations occur that do not correlate.     

水生维管植物克隆繁殖方式的多样性

克隆繁殖是植物界的一种重要的繁殖方式 ,具有很大的多样性 ,特别是水生维管植物更是如此。通过对水生维管植物克隆繁殖方式的进行深入分析 ,不仅揭示了克隆繁殖在水生维管植物适应环境中的意义 ,而且也阐明了克隆繁殖方式作为水生维管植物的生存对策之一 ,在水生维管植物的生态和演化以及进化过程中的重要作用。     

Biological implications of flavonoid chemistry in Baptisia and Thermopsis

An analysis of flavonoid distributional data from detailed biochemical systematic investigations of Baptisia and Thermopsis species supports the contention that the two genera are closely related with Baptisia being the more advanced evolutionarily and exhibiting greater evolutionary vigor. B. megacarpa may represent an ancestral complex which gave rise to several major Baptisia lines. Enzymes involved in methoxylation and 4′-glucosylation of flavonoids in Thermopsis have higher substrate specificities than those involved in 7-glucosylation.     

Mode and tempo in the evolution of socio-political organization: reconciling 'Darwinian' and 'Spencerian' evolutionary approaches in anthropology

Traditional investigations of the evolution of human social and political institutions trace their ancestry back to nineteenth century social scientists such as Herbert Spencer, and have concentrated on the increase in socio-political complexity over time. More recent studies of cultural evolution have been explicitly informed by Darwinian evolutionary theory and focus on the transmission of cultural traits between individuals. These two approaches to investigating cultural change are often seen as incompatible. However, we argue that many of the defining features and assumptions of 'Spencerian' cultural evolutionary theory represent testable hypotheses that can and should be tackled within a broader 'Darwinian' framework. In this paper we apply phylogenetic comparative techniques to data from Austronesian-speaking societies of Island South-East Asia and the Pacific to test hypotheses about the mode and tempo of human socio-political evolution. We find support for three ideas often associated with Spencerian cultural evolutionary theory: (i) political organization has evolved through a regular sequence of forms, (ii) increases in hierarchical political complexity have been more common than decreases, and (iii) political organization has co-evolved with the wider presence of hereditary social stratification.     

Genome relationships between octoploid and decaploid Thinopyrutn ponticum

MOUSTAKAS, M., 1993. Genome relationships between octoploid and decaploid Thinopyrum ponticum . The genomic relationships between octoploid and decaploid Thinopyrum ponticum were determined by computer-aided karyotype analysis. All the chromosome pairs of the octoploid race can be matched with those of the decaploid chromosome race. Four chromosome pairs that were recognized as marker chromosomes in octoploid and decaploid T. ponticum were almost identical. It is suggested that the two chromosome races of T. ponticum are segmental allopolyploids with genome designations J^jJ^jJ^eJ^e and J^jJ^jJ^jJ^eJ^e. Genome designations Jand J^e represent the same genome but with structural differentiation. Phylogenetic relationships between Thinopyrum species may be indicated by the presence or absence and type of marker chromosomes in the different species.     

Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution

Several studies based on the known three-dimensional (3-D) structures of proteins show that two homologous proteins with insignificant sequence similarity could adopt a common fold and may perform same or similar biochemical functions. Hence, it is appropriate to use similarities in 3-D structure of proteins rather than the amino acid sequence similarities in modelling evolution of distantly related proteins. Here we present an assessment of using 3-D structures in modelling evolution of homologous proteins. Using a dataset of 108 protein domain families of known structures with at least 10 members per family we present a comparison of extent of structural and sequence dissimilarities among pairs of proteins which are inputs into the construction of phylogenetic trees. We find that correlation between the structure-based dissimilarity measures and the sequence-based dissimilarity measures is usually good if the sequence similarity among the homologues is about 30% or more. For protein families with low sequence similarity among the members, the correlation coefficient between the sequence-based and the structure-based dissimilarities are poor. In these cases the structure-based dendrogram clusters proteins with most similar biochemical functional properties better than the sequence-similarity based dendrogram. In multi-domain protein families and disulphide-rich protein families the correlation coefficient for the match of sequence-based and structure-based dissimilarity (SDM) measures can be poor though the sequence identity could be higher than 30%. Hence it is suggested that protein evolution is best modelled using 3-D structures if the sequence similarities (SSM) of the homologues are very low.     

The best of both worlds: Phylogenetic eigenvector regression and mapping

Eigenfunction analyses have been widely used to model patterns of autocorrelation in time, space and phylogeny. In a phylogenetic context, Diniz-Filho et al. (1998) proposed what they called Phylogenetic Eigenvector Regression (PVR), in which pairwise phylogenetic distances among species are submitted to a Principal Coordinate Analysis, and eigenvectors are then used as explanatory variables in regression, correlation or ANOVAs. More recently, a new approach called Phylogenetic Eigenvector Mapping (PEM) was proposed, with the main advantage of explicitly incorporating a model-based warping in phylogenetic distance in which an Ornstein-Uhlenbeck (O-U) process is fitted to data before eigenvector extraction. Here we compared PVR and PEM in respect to estimated phylogenetic signal, correlated evolution under alternative evolutionary models and phylogenetic imputation, using simulated data. Despite similarity between the two approaches, PEM has a slightly higher prediction ability and is more general than the original PVR. Even so, in a conceptual sense, PEM may provide a technique in the best of both worlds, combining the flexibility of data-driven and empirical eigenfunction analyses and the sounding insights provided by evolutionary models well known in comparative analyses.     

Genic differentiation and phylogenetic relationships within two New World bat genera

Phylogenetic placement of taxa within the two New World leaf-nosed bat genera, Tonatia and Micronycteris was carried out using allozymic characters. Of particular interest were the relationships between the karyotypically megaevolved species and their proposed congeners. Neither of the two karyotypically megaevolved Tonatia species shared synapomorphic allozymes with the other Tonatia taxa. In contrast, the three Micronycteris species identified as having undergone this unusual mode of karyotypic evolution fall within a common evolutionary assemblage with all but one of their congeners. Measures of genic similarity among the Tonatia and Micronycteris species yield relatively low Nei identity values. No correlation is found when the number of karyotypic and allozymic changes since a common ancestor are compared.     

Ontogenetic features of Luciocephalus (Perciformes, Anabantoidei) with a revised hypothesis of anabantoid intrarelationships

The anatomy of the anabantoid fish Luciocephalus is reinvestigated and the ontogeny of certain character complexes is described for the first time. Luciocephalus possesses the following previously unrecognized or equivocally interpreted anatomical characters: a clearly separate ectopterygoid bone, pharyngeal processes of the basioccipital, a toothless pharyngeal process of the parasphenoid, an infrapharyngobranchial I and an endoskeletal mental ossification. In addition, aspects of the ontogeny of the hyopalatine arch in the belontiids Belontia, Trichogaster and Ctenops are described. Species of these three genera all possess an ectopterygoid bone previously thought to be lacking in the family Belontiidae. The significance of the results for reconstructing interrelationships of the anabantoid families and the phylogenetic position of Luciocephalus is discussed. A revised hypothesis of anabantoid intrarelationships is presented. Four synapomorphic characters indicate that Luciocephalus is more closely related to the Belontiidae (including Osphronemus) rather than forming the sister group of all other anabantoids.