Phylogenetic significance of morphological characters in the taxonomy of Pestalotiopsis species

There has been considerable disagreement regarding the relationships among Pestalotiopsis species and their delimitations. A molecular phylogenetic analysis was conducted on 32 species of Pestalotiopsis in order to evaluate the utility of morphological characters currently used in their taxonomy. Phylogenetic relationships were inferred from nucleotide sequences in the ITS regions and 5.8S gene of the rDNA under four optimality criteria: maximum parsimony, weighted parsimony, maximum likelihood, and neighbor joining. Phylogenies estimated from all analyses yielded trees of essentially similar topology and revealed 3 major groups that correspond with morphology-based classification systems. Molecular data indicated that the genus contains two distinct lineages based on pigmentation of median cells and four distinct groupings based on morphology of apical appendages. The analyses did not support reliability of other phenotypic characters of this genus, such as spore dimensions. Characters with particular phylogenetic significance are discussed in relation to the taxonomy of Pestalotiopsis.     

The size of differences as a quality criterion for characters in phylogenetics

One important aspect regarding the suitability of a character for phylogenetic reconstruction is the separability of compared groups with regard to different character states. Therefore, it is recommendable to standardize mean differences with respect to the dispersion of individual data.     

Classification of nucleotide sequences over their frequency dictionaries reveals a relation between the structure of sequences and taxonomy of their bearers

Classification of 16S RNA sequences over their frequency dictionaries, both real ones, and transformed ones was studied. Two entities were considered to be close each other from the point of view of their structure, if their frequency dictionaries were close, in Eucledian metric. A transformation procedure of a frequency dictionary has been implemented that reveals the peculiarities of information structure of a nucleotide sequence. A comparative study of two classification developed over the real frequency dictionary vs. that one developed over the transformed frequency dictionary was carried out. The strong correlation is revealed between the classification and the taxonomy of 16S RNA bearer. For the classes isolated, the information valuable words were identified. These words are the main factors of a difference between the classes. The frequency dictionaries containing the words of the length 3 exhibit the best correlation between a class and a genus. A genus, as a rule, is included into the same class, and the exclusion are sporadic. A development of hierarchy classification over the transformed frequency dictionaries separated one or two taxonomy groups, as each stage of classification. The unexpectedly frequent, or contrary, unexpectedly rare occurred of words (of the length 3) in entities under consideration make the structure difference between the classes of the nucleotide sequences.     

苏铁属植物叶表皮特征及其分类学和古生态学意义

苏铁属(Cycas)作为一类古老的裸子植物,经历了漫长的演化历史,因此,深入研究其形态特征与环境的相互关系,有望为古环境重建提供重要参考依据。本文分析西双版纳和深圳两地植物园栽培环境下27种苏铁属植物的叶表皮特征及气孔参数的差异,并进一步探讨气孔参数与系统发育的关系。结果表明:(1)苏铁属内叶表皮特征保守稳定,具有一定的分类学意义:依据表皮细胞及气孔器特征划分了四种叶表皮类型,可为苏铁现生植物或化石的鉴定提供参考。(2)四种叶表皮类型指示了不同的原生生境特征,对古环境具有一定的指示意义。(3)同一环境下,气孔参数在属内的种间差异显著,其次,气孔指数在属内变化与系统发育有关,除气孔指数具显著的系统发育信号外,其余气孔参数均无显著系统发育信号。本研究结果表明气孔参数法重建古大气CO2浓度时,需尽可能利用亲缘关系相近、叶表皮和生境皆相似的代理种,并明确气孔参数与大气CO2分压的相关关系在种间的异同,从而提高该方法的有效性。     

木兰属萜类生源途径及其分类学意义

选取木兰科木兰属15种植物的108种萜类化合物成分作为研究资料,根据各种萜类化合物成分的结构类型从中找出34条可能的生源合成途径,并将各种生源途径作为数量性状,用聚类分析的方法得到木兰属各分类群之间的相关系数、作出树形分支图,根据所含萜类比较复杂成分的比例对该属的演化关系作出推论,结果表明木兰亚属与玉兰亚属是属于平行演化的两支。     

Anticarnosine activity of staphylococci as a criterion for assessment of their persistence potential

The analysis on clinical material and the use of experimental models allowed to prove the role of anticarnosine activity of staphylococci in their persistence. Light and electronic microscopy revealed large destruction of ultrastructural eukaryote components and decreased proliferative activity in animals challenged with strains characterized by high anticarnosine activity. Adaptive mechanisms, providing dynamic equilibrium in "eukaryote--prokaryote" system, are described.     

Devonian and Carboniferous dendroid graptolites from Belgium and their significance for the taxonomy of the Dendroidea

Devonian and Carboniferous dendroid graptolites from Belgium are evaluated and partly revised. New finds in two different stratigraphic intervals of the ‘Carrière de Lompret’, an active quarry exploiting Frasnian limestones and shales east of Frasnes-lez-Couvin, allow the identification of Callograptus sp. and Dictyonema fraiponti, both belonging to the dendroid family Acanthograptidae. The relatively high diversity of the dendroid graptolite fauna from the Viséan Marbre noir de Denée, one of the few Carboniferous graptolite faunas in the world, can be shown to be based on astogenetic and preservational aspects. Nearly all known specimens can be included in the highly variable Dictyonema fraiponti, a fan-shaped large dendroid species with complex stipes formed from tubular thecae, possessing simple to complex bridges connecting adjacent stipes. Some of the graptolite material is well preserved and provides important information on the tubarium construction of Devonian to Carboniferous dendroid graptolites and, thus, is highly significant for a taxonomic and phylogenetic understanding of the youngest dendroid graptolite faunas worldwide. The genera Callograptus and Ptiograptus are revised based on their type species (Callograptus elegans from Quebec, Canada; Ptiograptus percorrugatus from the Silurian or Devonian of Kentucky, USA) and referred to the Acanthograptidae.     

Principal component analysis as an alternative treatment for morphometric characters: phylogeny of caseids as a case study

In a recent study, the phylogeny of Caseidae (a herbivorous family of Palaeozoic synapsids belonging to the paraphyletic grade known as pelycosaurs) was analysed with a dataset employing more than three hundred continuous morphological characters in an effort to follow the principles of total evidence. Continuous characters are a source of great debate, with disagreements surrounding their suitability for and treatment in phylogenetic analysis. A number of shortcomings were identified in the handling of continuous characters in this study of caseids, including the use of gap weighting to discretize the characters and potential issues with redundancy and character non‐independence. Therefore, an alternative treatment for these characters is suggested here. First, rather than using gap weighting, the continuous characters were analysed in the program TNT, in which the raw values can be treated as continuous rather than discrete. Second, prior to the phylogenetic analysis, the continuous characters were subjected to a log‐ratio principal component analysis, and then the principal components were included in the character matrix rather than the raw ratios. Analysing the original data in TNT produced little difference in the results, but using the principal components as continuous characters resulted in alternative positions for Caseopsis agilis, Ennatosaurus tecton and Caseoides sanangeloensis. The differences are judged to be due to the reduced redundancy of the characters, the smaller number of principal components not overwhelming the discrete characters and the use of a scaling method which allows principal components with a higher variance to have a greater influence on the analysis. The positions of highly fragmentary fossils depended heavily on the method used to treat the missing characters in the principal component analysis, and so the method proposed here is not recommended for analysing very incomplete taxa.     

珍稀蝴蝶的亚种分类问题及保护意义：以喙凤蝶属为例

亚种是种的一个亚单位,由于分类学上的不同定义和主观性而受到质疑。然而,在分类学实践中,所有试图用不同的术语取代亚种或完全放弃亚种的尝试都是不可接受的。亚种同样是生物多样性的重要组成,有一定独特性,为自然进程的一部分,具有保护研究价值。本文基于亚种概念、特征认为亚种分类需参考地理隔离(如异域分布)与表型差异2个原则。我们以珍稀喙凤蝶属Teinopalpus为例,系统收集亚种分类文献,采集该属亚种的地理分布、形态描述与差异等信息,综合分析该属蝶类的亚种分类现状、问题与原因。1843-2007年喙凤蝶属金带喙凤蝶T. imperialis及其姊妹种金斑喙凤蝶T. aureus各自记录了8个亚种。然而,部分亚种记录于同一行政区,如金带喙凤蝶T. i. imperialis, T. i. himalaicus与T. i. behludinii 均在中国四川有记录,而金斑喙凤蝶在中国浙江有2个亚种记录,这显示名称应用的不确定性。考虑到两姊妹种同域分布在亚洲东南部,通过比对亚种正模所在地植被群落(biome)、生态区(ecoregion)的一致性判定地理隔离,发现金带喙凤蝶(覆盖3个植被群落)比金斑喙凤蝶(仅覆盖1个)的种下生态位分化程度更高。而据所处生态区的一致性,建议将金带喙凤蝶亚种分类修订为T. i. imperialis, T. i. himalaicus, T. i. miecoae, T. i. behludinii, T. i. imperatrix(含T. i. bhumipholi), T. i.gillesi和T. i. gerritesi 7个;金斑喙凤蝶亚种分类修订为T. a. aureus(含T. a. wuyiensis, T. a. guangxiensis与T. a. nagaoi), T. a. eminens(含T. a. laotiana), T. a. shinkaii与T. a. hainani 4个。由于可参考标本少,喙凤蝶属亚种确立时可用形态比对信息有限、不完整(如只依据单性的形态比对结果等),易“过度亚种化”。珍稀亚种分类问题(如“过度亚种化”、信息不确定性等)影响其保护措施,因为管理者常需权衡投入成本与成效、明确优先保护区域或对象,并以此做出决策。因此,在更多确定信息未获得前,不建议进行亚种分类。     

Triterpenes from Angelica cartilagino-marginata var. foliata Yuan et Shan and their significance as chemosystematic characters

One new and three known triterpenes were isolated from roots of Angelica cartilagino-marginata var. foliata Yuan et Shan. The structures of the new compounds were determined by modern spectroscopic techniques, including 2D NMR experiments. These triterpenes are important characters in chemosystematics of Umbelliferae.     

Foliar anatomy of neotropical Salicaceae: potentially useful characters for taxonomy

The taxonomy of neotropical Salicaceae, a family that now includes the majority of the former Flacourtiaceae, has been problematic, especially because they display very diverse morphology and have several characteristics in common with many other families. Recent phylogenetic studies have proposed substantial changes at both family and generic levels. Considering the importance of anatomy as an aid for taxonomy, the gathering of anatomical data for the family is fundamental to help clarify the taxonomic problems. Leaves belonging to Abatia americana (four samples), Banara brasiliensis (2), Casearia arborea (4), C. decandra (5), C. gossypiosperma (2), C. obliqua (1), C. sylvestris (3), C. ulmifolia (3), Prockia crucis (3), and Xylosma prockia (4) and the closely related Carpotroche brasiliensis (3) from Achariaceae, were studied by standard microscopy techniques. The leaves were anatomically described, emphasizing their differences and similarities. Similar characters for the neotropical Salicaceae (former Flacourtiaceae) and Salicaceae strictu sensu were recognized, such as the presence of salicoid leaf teeth, brachyparacytic stomata, secondary growth of the petiole, abundance of crystals, collateral and arch-shaped vascular system at the midrib, and sclerenchyma accompanying the bundles. These data demonstrate that leaf anatomy can provide evidence to assist with the taxonomy of Salicaceae, at family, generic, and specific levels.     

Heterochrony of the ostracod hingement and its significance for taxonomy

The hingement of cytheracean ostracods is a very significant character for taxonomy. In some taxa, adult hinge characters develop abruptly at the last moult, whilst in others no significant change of hingement is observed throughout ontogeny. These two types of hinge development are regarded to as 'leap type' and 'gradual type', respectively. In the five major cytheracean families examined, heterochronic relationships were detected in 11 pairs, i.e. in each family, the adult hinge character of the gradual-type taxon corresponds to the A-1 hingement of the leap-type taxon. Furthermore, these 11 heterochronic pairs can be classified into two categories. The first are 'complete pairs', in which the adult hinge character of gradual-type taxa can be almost completely identified in the A-1 of the counterpart leap-type taxa. The second group are 'incomplete pairs', in which the relationship is not so complete. Palaeontological evidence indicates that in most cases the heterochronic evolution is characterized by paedomorphosis, because the leap type always has the older fossil record than the gradual type in each pair. Most of the gradual-type species of complete pairs originated in the Miocene, while all the gradual-type species of incomplete pairs appeared in and after the Pleistocene. Heterochronic changes must occur universally in the cytheracean ostracods, but the degree of completeness of the heterochronic pair seems to be related to the age of speciation.     

葡萄科植物叶表皮特征及其系统学意义

在光学显微镜和扫描电镜下,对葡萄科Vitaceae11属37种代表植物的叶表皮特征进行了观察,发现该科植物叶表皮细胞形状为无规则形或多边形,垂周壁一般为平直、弓形或浅波状;气孔器通常仅分布在下表皮（火筒树属Leea偶尔可在上表皮观察到）,除无规则型（地锦属Parthenocissus、俞藤属Yua、葡萄属Vitis、蛇葡萄属Ampelopsis和酸蔹藤属Ampelocissus）最为常见外,不等细胞型（火筒树属）、短平列型（白粉藤属Cissus、乌蔹莓属Cayratia和崖爬藤属Tetrastigma）、     

Morphological characters of leaf epidermis in schisandraceae and their systematic significance

The leaf epidermis of 23 species belonging to 2 genera within Schisandraceae was investigated using light and scanning electron microscopy. Many characters of the leaf epidermis in Schisandraceae, such as shape of epidermal cells, type of stomata, and cuticular ornamentation, are usually constant within species and thus helpful for elucidating the relationship between and within genera. Leaf epidermal cells are usually irregular or polygonal in shape. The patterns of anticlinal walls are straight, sinuolate, sinuous or sinuate. The stomatal apparatus belong to paracytic or laterocytic type and the latter is subdivided into various subtypes based on the number and arrangement of subsidiary cells. Under scanning electron microscopy observation, the cuticular membrane is often striated, sometimes squamulate or granular; the inner margin of the outer stomatal rim is nearly smooth or denticulate. Evidences from shape of epidermal cells, patterns of cuticular intrusions between the ends of each guard cell of a pair and distribution of stomatal apparatuses support the viewpoint thatKadsura is more primitive thanSchisandra. Study on leaf epidermis also shows thatKadsura interior deserves the rank of a distinct species and the treatment of the evergreen groups, includingS. propinqua andS. plena, as distinct from the deciduous species of the genus is quite natural.