Floristic and structural variation in the Tamaulipan thornscrub,northeastern Mexico

Abstract. A generalized research strategy is presented for identifying the ecological effects of the physical environment and management in a poorly known region of subtropical, semiarid thornscrub in northeastern Mexico. Vegetation samples were stratified across a small number of climatic subregions, substrate types and topographic situations. Classification analysis and PCo A of the species x site matrix of incidence data after application of the Information Statistic were used. The analyses suggested that the regional variation in climate, substrates and topography was responsible for the major floristic differences in the vegetation. The distributions of most plant species were related to the variation in the physical environment. PCo A of the species x site cover data after application of the Bray-Curtis dissimilarity metric revealed evidence of vegetation change due to overgrazing in each major floristic group, but not to selective cutting for timber and firewood.     

Soil–vegetation relationships in cerrados under different fire frequencies

Fire is an important ecological factor that structures savannas, such as the cerrado, by selecting plant species and altering soil nutrient content. In Emas National Park, central Brazil, we compared soils under three different fire regimes and their relationship to the cerrado species they support. We collected 25 soil and vegetation samples at each site. We found differences in soil characteristics (p?<?0.05), with fertility and fire frequency positively related: in the annually burned site we found higher values of organic matter, nitrogen, and clay, whereas in the protected site we detected lower values of pH and higher values of aluminum. We also observed differences in plant community structure, with distinct floristic compositions in each site. Floristic composition was more related to sand proportion (intra-set correlation?=?0.834). Different fire frequencies increase environmental heterogeneity and beta diversity in the Brazilian cerrado.     

Phytogeographical and phenological comparison of the Meuse and the Saône valley meadows (France)

The meadows of the floodplains of the Saône and the Meuse contain similar ecosystems subject to regular winter and spring flooding. The floristic and faunistic biodiversity decreases with the intensification of agricultural practices. The plant communities show the same zonation along a topographic gradient and have similar floristic progression. Thus, the climatic, biogeographic, human and soil factors have determined the floristic particularities of each valley. The floristic affinities of the two floodplains permitted the comparison of the phenological development of fourteen plant species. Many gaps in the development of species have been observed. These could be explained by the climatic differences betwen the two valleys (sub-Mediterranean influences in the Saône and sub-Atlantic in the Meuse), the existence of different types of soils in each valley (sand part more important in the Saône) and the occurrence of specific ecotypes in each valley.     

Biotic and abiotic parameters that distinguish types of temporary ponds in a Portuguese Mediterranean ecosystem

Temporary ponds are seasonal wetland habitats subjected to extreme and unstable ecological conditions. Some are classified as priority habitats for conservation by the European Union Habitats Directive. Our study area was the coastal plain of southwest Portugal, which spans across 100 km north to south and hosts a large number of temporary ponds as a consequence of climatic and edaphic characteristics. Field sampling of floristic and edaphic data was carried out in 24 temporary ponds every spring between 2005 and 2008. We recorded a total of 174 plant species identified within visually homogeneous plots. We included the data in a geographic information system and classified ponds according to their floristic composition, using a biotic regionalization analysis based on species presence/absence, which is a practical and unambiguous criterion. We found three significantly different groups of ponds which corresponded to an eco-physiognomic pond typology: Mediterranean temporary ponds, marshlands, and disturbed ponds. For the first two pond types we defined characteristic or indicator plant species. We searched also for relationships between pond type and a series of large-scale climatic, geographic, and geological variables, as well as local-scale physical and chemical properties of the soil. Pond type was distinguished by a complex combination of some of these variables, including environmental energy, soil texture, nitrogen content of the soil and pH. A practical way of discriminating between different types of ponds is important so that management and conservation measures can be defined accordingly.     

Spatial modelling of ecological indicator values improves predictions of plant distributions in complex landscapes

Ecologically meaningful predictors are often neglected in plant distribution studies, resulting in incomplete niche quantification and low predictive power of species distribution models (SDMs). Because environmental data are rare and expensive to collect, and because their relationship with local climatic and topographic conditions are complex, mapping them over large geographic extents and at high spatial resolution remains a major challenge. Here, we propose to derive environmental data layers by mapping ecological indicator values in space. We combined ~6 million plant occurrences with expert-based plant ecological indicator values (EIVs) of 3600 species in Switzerland. EIVs representing local soil properties (pH, moisture, moisture variability, aeration, humus and nutrients) and climatic conditions (continentality, light) were modelled at 93 m spatial resolution with the Random Forest algorithm and 16 predictors representing meso-climate, land use, topography and geology. Models were evaluated and predictions of EIVs were compared with soil inventory data. We mapped each EIV separately and evaluated EIV importance in explaining the distribution of 500 plant species using SDMs with a set of 30 environmental predictors. Finally, we tested how they improve an ensemble of SDMs compared to a standard set of predictors for ca 60 plant species. All EIV models showed excellent performance (|r| > 0.9) and predictions were correlated reasonably (|r| > 0.4) to soil properties measured in the field. Resulting EIV maps were among the most important predictors in SDMs. Also, in ensemble SDMs overall predictive performance increased, mainly through improved model specificity reducing species range overestimation. Combining large citizen science databases to expert-based EIVs is a powerful and cost–effective approach for generalizing local edaphic and climatic conditions over large areas. Producing ecologically meaningful predictors is a first step for generating better predictions of species distribution which is of main importance for decision makers in conservation and environmental management projects.     

Elevational trends of biodiversity and plant traits do not converge—a test in the Helan Range, NW China

When elevational gradients include combinations of different climatic gradients, such as a decline in temperature combined with an increase in moisture, vegetation and plant trait responses are difficult to explain. Here, we used plant species richness and morphometric traits data across steep elevational gradients in the Helan Range of Northwestern China in an attempt to separate general trends (temperature related) from regional peculiarity (moisture related). Based on the floristic data of the Helan Range as well as plot-based data, both drought (at low elevation) and low temperature (high elevation) are associated with low species richness presumably also explaining the peak in diversity at mid-elevation, where climatic conditions are moderate. However, this mid-elevation peak in diversity is not mirrored in trends of plant traits such as leaf size and inflorescence size, which show either unidirectional trends or no change with elevation (with impacts of drought and low temperature perhaps gradually replacing each other). Our analysis illustrated the taxonomic and plant functional type (PFT)-related biases in functional trait studies and showed that consistent patterns only emerge after careful data stratification, with taxonomy (family level) holding more promises than PFTs. Inflorescence size increased with elevation in major insect-pollinated families, a trend not seen in wind-pollinated (graminoid) families. However, the reproductive effort expressed as inflorescence/leaf length ratio increases with elevation in the majority of plant families, irrespective of their pollination system. The fact that these biometric responses to elevation do not correlate with responses in species richness (which peaks at mid-elevation) may reflect contrasting drivers of trait selection and biodiversity. Based on our plot-based data, this analysis also confirmed the usefulness of floristic archive data for testing ecological theory related to elevational gradients.     

A comparison of fine-scale distribution patterns of four plant groups in an Amazonian rainforest

We carried out a comparison among the floristic patterns of four different plant groups (palms, trees, melastomes and pteridophytes) in a lowland rainforest site in Peruvian Amazonia. The study site consisted of a mosaic of edaphic patches reflecting the different geological formations that can be found on the surface. We collected the data along a linear transect (500 m long, divided into 20 × 20 m or 5 × 20 m subplots), and recorded of the four plant groups all individuals that exceeded a minimum size limit predefined for each plant group. We also recorded the drainage conditions and soil type classes in each subplot of the transect. The results indicated that different plant groups can produce similar floristic patterns in local spatial scales, and that these patterns reflect similarities in edaphic conditions. All matrix correlations calculated between pairs of the four plant groups were positive and statistically significant. Floristic composition in all plant groups correlated with soil class, and to a somewhat lesser degree with drainage. These results imply that any one of the four plant groups could serve as a rough indicator of more general floristic patterns, and that even the inventory of a limited part of the flora can shed light on the floristic variation found in Amazonian forests.     

Environmental factors and community dynamics at the southernmost part of the North American Graminetum – I. On the contribution of climatic factors to temporal variation in species composition

Compositional patterns of vegetation and their relationship to temporal and spatial environmental variation, with emphasis on climatic factors, were investigated in plant communities located in the southernmost portion of the North American Graminetum, in central México. Data from 353 samples, obtained in four ecologically contrasting plant communities during 11 years, were analyzed by partial canonical correspondence analysis. Eight climatic variables and eighteen covariables (seventeen edaphic and one resource management) were included in the ordination. A relationship between floristic change and weather variation, once covariables effects were fitted, was examined. Despite a strong contrast in ecological conditions among study sites, a set of four climatic variables was finally found in which each variable contributed independently and statistically (P < 0.01) to the total variance in the vegetation data. Thus, environmental variables other than climatic could not conceal the important role of weather as a mediator of floristic change through time. Summer precipitation and summer maximum temperature showed the highest correlations with the first two species axes, 0.77 and –0.39, respectively. Contribution of these two climatic variables to variance in the vegetation data explained by environmental variables was approximately 81%. Annual species were abundant during rainy years, while abundance of perennial grasses and shrubs showed no clear relationship to weather variation. This study explicitly probes the important role of rain patterns in shaping structure and composition of semiarid communities and considers how other environmental factors can affect plant communities at the southernmost part of the North American Graminetum.     

Variation in floristic and trait composition along environmental gradients in the herb layer of temperate forests in the transition zone between Central and SE Europe

Species- and trait-environment linkages in forest plant communities continue to be a frequent topic in ecological research. We studied the dependence of floristic and functional trait composition on environmental factors, namely local soil properties, overstory characteristics, climatic parameters and other abiotic and biotic variables. The study area comprised 50 monitoring plots across Slovenia, belonging to the EU ICP Forests monitoring network. Vegetation was surveyed in accordance with harmonized protocols, and environmental variables were either measured or estimated during vegetation sampling. Significant predictors of species composition were identified by canonical correspondence analysis. Correlations between plant traits, i.e. plant growth habit, life form, flowering features and CSR signature, were examined with fourth-corner analysis and linear regressions. Our results show that variation in floristic composition was mainly explained by climatic parameters (mean annual temperature, mean annual precipitation), soil properties (pH) and tree layer-dependent light conditions. Trait composition was most closely related with tree layer characteristics, such as shade-casting ability (SCA, a proxy for light availability in the understory layer), tree species richness and tree species composition. Amongst soil properties, total nitrogen content and soil texture (proportion of clay) were most frequently correlated with different species traits or trait states. The CSR signature of herb communities was associated with tree layer SCA, soil pH and mean annual temperature. The floristic composition of the studied herb-layer vegetation depended on temperature and precipitation, which are likely to be influenced by ongoing climate change (warming and drying). Trait composition exhibited significant links to tree layer characteristics and soil conditions, which are in turn directly modified by forest management interventions.

     

Importance of soil nutrients in the distribution of forest communities on a large geographical scale

Aim Soil nutrient content plays a key role in plant growth through mineral nutrition and toxicity. Its impact on plant species and community distribution is studied on a large geographical scale through surrogates like topography or geology. We investigated the importance of soil pH and C:N ratio, as direct nutritional gradients, to determine, with climatic factors, the spatial distribution of plant communities over large territories. Location We studied the distribution of six beech habitats of the NATURA 2000 network throughout France (550,000 km²). Methods Models were calibrated with 2108 floristic plots classified in the NATURA 2000 system and including climatic and topographic variables and soil nutritional measurements carried out in a laboratory. Logistic regression was used to model habitat distribution according to environmental variables. Climatic layers, a digital elevation model and maps of soil pH and nitrogen content, created using plant indicator values and large floristic databases, were used to map the sites suitable for beech communities. Distribution models were evaluated with an independent set of 2091 phytosociological plots. Results pH and nitrogen supply were the key distribution drivers for four of the six beech communities on a national scale. Their use in the distribution models distinguished within homogeneous climatic territories a gradient of nutritional conditions from acidic areas, suitable for nutrient‐poor beech communities, to calcareous areas suitable for nutrient‐rich ones. Predicted maps of beech habitats fit the spatial distribution of validation plots. Main conclusions Soil pH and nitrogen supply strongly improve predictions of forest community distribution carried out with climatic variables on a broad geographical scale. They allow delineation of areas with nutritional conditions suitable for each community, as well as the realization of predictive high‐resolution maps over large areas useful for sustainable and conservation management. Nomenclature Tutin & Heywood (2001 ) Flora Europaea. Cambridge University Press, Cambridge.     

Biogeographic and anthropogenic correlates of Aleutian Islands plant diversity: A machine‐learning approach

This is the first comprehensive analysis of vascular plant diversity patterns in the Aleutian Islands to identify and quantify the impact of Aleutian Island distance dispersal barriers, geographical, ecological and anthropogenic factors. Data from public Open Access databases, printed floristic accounts, and from collections made by the primary author were used to develop an Aleutian floristic database. The most common plant distribution pattern was “an eastern origin community”, though it compared similarly to the “Western” and “Widespread” distribution pattern. We established an ecological plant community composition class for each island, based on clustering species assemblage dissimilarity measurements (Jaccard Index), and a measurement of phylogenetic dissimilarity (UniFrac). We modelled these composition classes and species richness values in non‐parametric algorithmic models and concepts (data cloning using machine learning, stochastic boosting‐ TreeNet) based on classic and Aleutians‐specific island biogeography hypotheses. Plant species richness is strongly associated with the equilibrium model variables of area and island isolation, as well as distance to the Alaska Peninsula, and island total stream length. Species composition is strongly associated with the landmass groups during the last glacial maximum, maximum island elevation, island isolation and island area. Phylogenetic composition is associated with island area, distance from the islands to the Chukotka Peninsula, maximum island elevation, island geologic age, and island isolation. This study extends the equilibrium theory of island biogeography by including additional drivers of diversity during the Anthropocene, such as the landmass during the LGM, as well as factors that may be related to anthropogenic extinction rate.     

Ecological features affect patterns of plant communities in Mediterranean temporary rock pools

In this paper, the results of a study on the ecology, floristic composition and spatial assemblages of temporary limestone rock pool plant communities of a central Mediterranean area (S Sicily, the Maltese Islands and Lampedusa) are presented. A total of 76 temporary pools were studied, distributed between the infra-mediterranean and thermo-mediterranean bioclimatic belt. For each temporary rock pools, the floristic composition and cover of the species were determined using standard relevé methods. Moreover, for 50 of these pools, pH, conductivity, soil depth, water-level, altitude and floristic richness and diversity index were assessed. The plant communities were analysed using unweighted pair group method using arithmetic averages and Euclidean distance classification and ordination methods such as canonical correspondence analysis (CCA). A total of four plant communities with specific floristic composition were established, each one with a different dominant species: Callitriche truncata; Elatine gussonei; Tillaea vaillantii and Lythrum hyssopifolia. According to the CCA, the spatial patterns of plant communities follow an ecological gradient related to water level and depth/size of the rock pools: these are the main ecological features affecting the distribution of the plant communities of rock pools. In addition, floristic richness and diversity index showed a slight increase in trend from temporary pools submerged for long periods towards pools submerged for short periods.     

Quantitative prediction of the distribution and abundance of Vaccinium myrtillus with climatic and edaphic factors

Question: Can the distribution and abundance of Vaccinium myrtillus be reasonably predicted with soil nutritional and climatic factors? Location: Forests of France. Methods: We used Braun‐Blanquet abundance/dominance information for Vaccinium myrtillus on 2905 forest sites extracted from the phyto‐ecological database EcoPlant, to characterize the species ecological response to climatic and edaphic factors and to predict its cover/abundance at the national scale. The link between cover/abundance of the species and climatic (65 monthly and annual predictors concerning temperature, precipitation, radiation, potential evapotranspiration, water balance) and edaphic (two predictors: soil pH and C:N ratio) factors was investigated with proportional odds models. We evaluated the quality of our model with 9830 independent relevés extracted from Sophy, a large phytosociological database for France. Results: In France, Vaccinium myrtillus is at the southern limit of its European geographic range and three environmental factors (mean annual temperature, soil pH and C:N ratio) allow prediction of its distribution and abundance in forests with high success rates. The species reveals a preference for colder sites (especially mountains) and nutritionally poor soils (low pH and high C:N ratio). A predictive map of its geographic range reveals that the main potential habitats are mountains and northwestern France. The potential habitats with maximal expected abundance are the Vosges and the Massif central mountains, which are both acidic mountains. Conclusions: Complete niche models including climate and soil nutritional conditions allow an improvement of the spatial prediction of plant species abundance at a broad scale. The use of soil nutritional variables in distribution models further leads to an improvement in the prediction of plant species habitats within their geographical range.     

Modelling the distribution of a threatened habitat: the California sage scrub

Aim Using predictive species distribution and ecological niche modelling our objectives are: (1) to identify important climatic drivers of distribution at regional scales of a locally complex and dynamic system – California sage scrub; (2) to map suitable sage scrub habitat in California; and (3) to distinguish between bioclimatic niches of floristic groups within sage scrub to assess the conservation significance of analysing such species groups. Location Coastal mediterranean‐type shrublands of southern and central California. Methods Using point localities from georeferenced herbarium records, we modelled the potential distribution and bioclimatic envelopes of 14 characteristic sage scrub species and three floristic groups (south‐coastal, coastal–interior disjunct and broadly distributed species) based upon current climate conditions. Maxent was used to map climatically suitable habitat, while principal components analysis followed by canonical discriminant analysis were used to distinguish between floristic groups and visualize species and group distributions in multivariate ecological space. Results Geographical distribution patterns of individual species were mirrored in the habitat suitability maps of floristic groups, notably the disjunct distribution of the coastal–interior species. Overlap in the distributions of floristic groups was evident in both geographical and multivariate niche space; however, discriminant analysis confirmed the separability of floristic groups based on bioclimatic variables. Higher performance of floristic group models compared with sage scrub as a whole suggests that groups have differing climate requirements for habitat suitability at regional scales and that breaking sage scrub into floristic groups improves the discrimination between climatically suitable and unsuitable habitat. Main conclusions The finding that presence‐only data and climatic variables can produce useful information on habitat suitability of California sage scrub species and floristic groups at a regional scale has important implications for ongoing efforts of habitat restoration for sage scrub. In addition, modelling at a group level provides important information about the differences in climatic niches within California sage scrub. Finally, the high performance of our floristic group models highlights the potential a community‐level modelling approach holds for investigating plant distribution patterns.     

Spatial Scale or Amplitude of Predictors as Determinants of the Relative Importance of Environmental Factors to Plant Community Structure

The literature on tropical rain forest plant‐community relationships with environmental factors usually does not recognize that the relative importance of environmental factors recorded in each study might be due to their amplitude of variation within sites. Geographic scale, however, is recognized as an important modulator of this relative importance. To disentangle the effects of scale and environmental amplitude, ferns and trees in two landscapes of the same size (each 25 km²) with different soil‐fertility amplitudes but similar soil‐texture range were sampled in central Amazonia. We found that major determinants of community structure were the same for ferns and trees. Texture was the main predictor of community structure in the site with homogeneous soil fertility, while availability of exchangeable cations was the main predictor in the site with a wider fertility range. When both sites were analyzed together, soil fertility was the main predictor of community structure and soil texture segregated floristic subgroups within certain ranges of the soil‐fertility gradient. We conclude that: (1) floristic patterns for trees and ferns are congruent; (2) floristic variation depends on the amplitude of the studied gradients, more than on geographical scale; (3) limiting factors are not necessarily the most important predictors of compositional patterns; and (4) communities are structured hierarchically. Therefore, landscape structure (meaning which combinations of environmental factors, their amplitude of variation and which part of the gradient is found within the landscape) affect our perception of the relative importance that environmental factors will have as predictors of species composition.     

Dispersal limitation and the assembly of soil Actinobacteria communities in a long-term chronosequence

It is uncertain whether the same ecological forces that structure plant and animal communities also shape microbial communities, especially those residing in soil. We sought to uncover the relative importance of present-day environmental characteristics, climatic variation, and historical contingencies in shaping soil actinobacterial communities in a long-term chronosequence. Actinobacteria communities were characterized in surface soil samples from four replicate forest stands with nearly identical edaphic and ecological properties, which range from 9500 to 14,000 years following glacial retreat in Michigan. Terminal restriction fragment length polymorphism (TRFLP) profiles and clone libraries of the actinobacterial 16S rRNA gene were constructed in each site for phenetic and phylogenetic analysis to determine whether dispersal limitation occurred following glacial retreat, or if community composition was determined by environmental heterogeneity. At every level of examination, actinobacterial community composition most closely correlated with distance, a surrogate for time, than with biogeochemical, plant community, or climatic characteristics. Despite correlation with leaf litter C:N and annual temperature, the significant and consistent relationship of biological communities with time since glacial retreat provides evidence that dispersal limitation is an ecological force structuring actinobacterial communities in soil over long periods of time.     

The RAINFOR database: monitoring forest biomass and dynamics

Problem: Data from over 100 permanent sample plots which have been studied for 10–20 years need a suitable system for storage which allows simple data manipulation and retrieval for analysis. Methods: A relational database linking tree records, taxonomic nomenclature and corresponding environmental data has been built in MS Access as part of the RAINFOR project. Conclusion: The database allows flexible and long‐term use of a large amount of data: more than 100 tree plots across Amazonia, incorporating over 80 000 records of individual trees and over 300 000 total records of tree diameter measurements from successive censuses. The database is designed to enable linkages to existing soil, floristic or plant‐trait databases. This database will be a useful tool for exploring the impact of environmental factors on forest structure and dynamics at local to continental scales, and long term changes in forest ecology. As an early example of its potential, we explore the impact of different methodological assumptions on estimates of tropical forest biomass and carbon storage.     

SaudiVeg ecoinformatics: Aims,current status and perspectives

During the last decade many electronic databases of vegetation plots were established in many countries around the world. These databases contain valuable phytosociological information assisting both governmental and NGO (Non-governmental organizations) agencies to formulate strategies and on-ground plans to manage and protect nature resources. This paper provides an account on aims, current status and perspectives of building of a vegetation database for the Central Region (Najd) of Saudi Arabia – the founding element of the Saudi Vegetation Database (SVD). The data stored by the database are sample plots (vegetation relevés) collected according to the field techniques of the Braun-Blanquet approach (lists of taxa accompanied by semi-quantitative cover assessment), and are accompanied by general vegetation characteristics such as vegetation layering and cover, information on life-form of the recorded species, geographical coordinates, altitude, soil typology, topography and many more. More than 2900 vegetation-plot records (relevés) have so far been collected in the Najd region; of these more than 2000 have already been stored using the Turboveg database platform. These field records cover many habitats such as depressions, wadis (dry river beds), agricultural lands, sand dunes, sabkhas, and ruderal habitats. The ecological information collected in the database is currently the largest set of vegetation data collated into a database in the Middle East. These data are of great importance for biodiversity studies in Saudi Arabia, since the region is recording a loss of biodiversity at a fast rate due to environmental problems such as global warming and land-use changes. We envisage that this database would catalyze further data collection on vegetation of the entire Arabian Peninsula, and shall serve as one of the most important datasets for classification and mapping of the vegetation of the Kingdom of Saudi Arabia.     

Recent dynamics of the wet pastures at Oukaimeden plateau (High Atlas mountains, Morroco)

Wetlands are a very important universal heritage; in the Moroccan High Atlas mountains the geomorphology and the slopes evolution determine the existence of the numerous projecting ledges of pozzines on plateaus and oozing. This is particularly the case in Oukaimeden site located at 75 km south of Marrakesh. These wet grasslands have been developed on small surface areas supported by soils water accumulation; and close to the sources and on some banks constitute wetlands of high floristic richness, which makes them very coveted pastures by local populations. These wet pastures are highly sensitive to climatic factors. Recent climatic changes, the anthropic and pastoral pressures and the global environmental changes, affect these zones at the level of their structure (areas, soil characteristics…) and their ecological functions. In the Oukaimeden plateau, the use of aerial photography made it possible to carry out a detailed follow up of the hydraulic adjustments (dam construction in the 1970s) as well as the setting up of new adjustments (tracks, paths, drain channel) on the structure and functioning of these grasslands.