Is the spatial pattern of a tree population in a seasonally dry tropical climate explained by density‐dependent mortality?

Spatial pattern of tropical plants is initially generated by limited seed dispersal, but the role of density‐dependent and independent mechanisms as modifiers of these patterns across ontogeny is poorly understood. We investigated whether density‐dependent mortality (DDM) and environmental heterogeneity can drive spatial pattern across the ontogeny of a tree in a seasonally dry tropical climate. We used Moran's I correlograms and spatial analysis by distance indices (SADIE) to assess the spatial patterns of the pre‐ and post‐germinative stages of Cordia oncocalyx (Boraginaceae), an abundant tree endemic in the deciduous thorny woodland in the northeastern Brazilian semiarid region. We also used RDA to analyse the effect of DDM and environmental heterogeneity (measured by microtopography and canopy openness) in the mortality and recruitment. Seeds, seedlings, juveniles and adults showed aggregated spatial patterns; infants and immatures were randomly distributed; adults, seeds and seedlings attracted each other while adult, juveniles and immatures repulsed each other. Infant and seedling mortality rates were related to DDM and the recruitment from infant to juvenile was more influenced by spatial heterogeneity. Attraction was determined by local dispersal; repulsion was related to DDM and environment heterogeneity, which allowed the return to aggregation in adult stage. Together, these results indicated that spatial pattern can change across ontogeny, in which the initial stages are responsive to DDM and the final stages are influenced by spatial heterogeneity.     

Phylogeography of Plathymenia reticulata (Leguminosae) reveals patterns of recent range expansion towards northeastern Brazil and southern Cerrados in Eastern Tropical South America

Little is known about past vegetation dynamics in Eastern Tropical South America (ETSA). Here we describe patterns of chloroplast (cp) DNA variation in Plathymenia reticulata, a widespread tree in the ETSA Atlantic Forest and Cerrado biomes, but not found in the xeromorphic Caatinga. Forty one populations, comprising 220 individuals, were analysed by sequencing the trnS‐trnG and trnL‐trnL‐trnF cpDNA regions. Combined, they resulted in 18 geographically structured haplotypes. The central region of the sampling area, comprising Minas Gerais and Goiás Brazilian states, is a centre of genetic diversity and probably the most longstanding area of the distribution range of the species. In contrast, populations from northeastern Brazil and the southern Cerrados showed very low diversity levels, almost exclusively with common haplotypes which are also found in the central region. Coupled with a long‐branched star‐like network, these patterns suggest a recent range expansion of P. reticulata to those regions from central region sources. The recent origin of the species (in the early Pleistocene) or the extinction of some populations due to drier and cooler climate during the last glacial maximum could have been responsible for that phylogeographic pattern. The populations from northeastern Brazil originated from two colonization routes, one eastern (Atlantic) and one western (inland). Due to its high diversity and complex landscape, the central region, especially central‐north Minas Gerais (between 15°–18° S and 42°–46° W), should be given the highest priority for conservation.     

Microsatellite markers for population and conservation genetics of tropical trees

We have developed microsatellite or simple sequence repeat (SSR) genetic markers for the tropical tree Pithecellobium elegans (Mimosoideae). The frequency of this class of marker is estimated and the level and distribution of variability at these markers is assessed and contrasted to that found at isozyme markers in the same populations. The results indicate that SSR loci are powerful tools for the analysis of population structure and that, in these populations, they provide a means of accurately examining two important parameters in conservation biology, gene flow and paternity.     

Transferability and characterization of nine microsatellite markers for the tropical tree species Tabebuia roseo-alba

Microsatellite loci that were previously developed in the tropical tree Tabebuia aurea were used for the genetic analysis of Tabebuia roseo-alba populations. Nine of 10 simple sequence repeat markers were amplified, and the polymorphism was assessed in 58 individuals sampled from two stands in southeastern Brazil. All loci were polymorphic with Mendelian inheritance. The allele numbers were high, ranging from 5 to 13 in population I and 3 to 7 in population II, with means of 8.9 and 5.5, respectively. We conclude that these markers can be efficiently used for parentage and gene-flow studies.     

Interspecific microsatellite markers for the study of pinniped populations

Microsatellites have rapidly become the marker of choice for a wide variety of population genetic studies. Here we describe 20 pinniped microsatellite markers which have been tested across 18 pinniped species. The majority of these markers have broad utility in all pinnipeds and provide a strong base for detailed population genetic studies in the Pinnipedia.