Bacterial Diversity and Geochemical Profiles in Sediments from Eutrophic Azorean Lakes

In the Azores, the advanced trophic state of the lakes requires a fast intervention to achieve the good ecological status prescribed by the Water Framework Directive. Despite the considerable effort made to describe the phytoplankton growing on the water column, the lack of information regarding the microbial processes in sediments is still high. Thus, for the successful implementation of internal management actions, the present work explored the relationships between geochemical profiles and dominant members of the bacterial community in sediments from eutrophic Azorean lakes. Lake Azul geochemical profiles were quite homogeneous for all parameters, while in lake Furnas the total iron profile presented a peak below the aerobic layer. For lake Verde, the concentrations of all studied parameters (20 ± 2% loss-on-ignition; 2.10 ± 0.08 mg g^?1 total phosphorus; 1.31 ± 0.50 mg g^?1 total nitrogen; 8.06 ± 0.13 mg g^?1 total iron) in the uppermost sediment layer were approximately two times higher than the ones in sediments from other lakes, decreasing with sediment depth. The higher amounts of phosphorus and organic matter in lake Verde suggested a higher internal contribution of phosphorus to eutrophication. The dominant members of the sediment bacterial community, investigated by denaturing gradient gel electrophoresis, were mostly affiliated to Proteobacteria phylum (Alpha-, Delta-, and Gamma-subclasses), group Bacteroidetes/Chlorobi and phylum Chloroflexi. The Cyanobacteria phylum was solely detected in sediments from lake Verde and lake Furnas that presented the highest amounts of nitrogen and phosphorus both in the water column and sediments, while the other phyla were detected in sediments from the three studied lakes. In conclusion, management measurers to achieve the good ecological status until 2015 should be distinct for the different lakes taking into account the relative magnitude of the nutrient sources and the bacterial diversity in sediments.     

Anaerobic methane oxidation potential and bacteria in freshwater lakes: Seasonal changes and the influence of trophic status

Nitrite-dependent anaerobic methane oxidation (n-damo), mainly carried out by n-damo bacteria, is an important pathway for mitigating methane emission from freshwater lakes. Although n-damo bacteria have been detected in a variety of freshwater lakes, their potential and distribution, and associated environmental factors, remain unclear. Therefore, the current study investigated the potential and distribution of anaerobic methanotrophs in sediments from Erhai Lake and Dianchi Lake, two adjacent freshwater lakes in the Yunnan Plateau with different trophic status. Both lakes showed active anaerobic methane oxidation potential and harbored a high density of n-damo bacteria. Based on the n-damo pmoA gene, sediment n-damo bacterial communities mainly consisted of Candidatus Methylomirabils oxyfera and Candidatus Methylomirabils sinica, as well as novel n-damo organisms. Sediment anaerobic methane oxidation potential and the n-damo bacterial community showed notable differences among seasons and between lakes. The environmental variables associated with lake trophic status (e.g. total nitrogen, ammonia nitrogen, nitrate nitrogen, and total organic carbon) might have significant impacts on the anaerobic methane oxidation potential, as well as the abundance and community structure of n-damo bacteria. Therefore, trophic status could determine the n-damo process in freshwater lake sediment.     

The relative importance of biological and chemical processes in the release of phosphorus from a highly organic sediment

Bacteria can play an important role in the process of anaerobic phosphorus release: they can act as a direct source of orthophosphates, or as a catalyst of iron hydroxyde reduction. We studied their influence on phosphorus release from highly organic sediments of a Canadian shield lake. Phosphorus and iron release were measured under aerobic and anaerobic conditions, with or without sterilization, and at different pH. We measured also the abundance and activity of bacteria in sediments. The increased P release after sterilization can be explained by cell lysis. Compared to sterilization, changing oxygen concentrations or acidification had little or no effect on P release. In these sediments, phosphorus and iron movements were independent. Most of the total dissolved iron seemed to be linked to humic acids, but not phosphorus.A contribution to the GRIL (Groupe de Recherche Interuniversitaire de Limnologie)     

Phosphorus Sequestration in Lake Sediment with Iron Mine Tailings

Internal phosphorus loading can lead to eutrophication in lakes when anoxic sediments release bioavailable phosphorus into the water column. In laboratory experiments, iron mine tailings helped to sequester phosphorus in sediment from a eutrophic lake. Phosphorus release from the sediments after extraction with distilled water or 0.02 N H ₂ SO ₄ was significantly reduced when mine tailings were added (1:1 w/w), even when the system was anaerobic (～ 1 mg O ₂ /L). The degree of sequestration was enhanced when glucose (1% w/w) was added to stimulate the growth of microorganisms, suggesting that the process was microbially mediated. We suggest that oxidized iron in the mine tailings served as an electron sink for microbial respiration via dissimilatory Fe³⁺ reduction. The reduced iron released into solution sequestered phosphorus, either as it re-oxidized and formed hydrous ferric oxide complexes containing phosphorus (HFO-P), or through precipitation. Since mine tailings are inexpensive, they may prove useful for preventing phosphorus from entering surface waters, as well as reducing internal phosphorus loading.     

Some aspects of iron cycling in maritime antarctic lakes

Iron occurs in extremely high concentrations in certain maritime Antarctic freshwater lakes which seasonally develop an anoxic zone. In oligotrophic Sombre Lake the data show that Fe(II) precipitates as Fe(III) oxyhydroxides which bind phosphorus and return it to the sediments. In nutrient-enriched Amos lake, significant quantities of sulphide are also produced and this binds a proportion of the released Fe(II) so reducing the ratio of total iron to phosphorus at the redox boundary where the oxyhydroxides are formed. A proportion of the sediment-released phosphorus therefore reaches the upper waters of this lake (unlike in Sombre Lake) and provides the initial nutrient source for under-ice phytoplankton development in spring. Iron-reducing bacteria have been isolated, from Sombre Lake sediments, which apparently utilise the abundant Fe(III) oxyhydroxides. From thermodynamic considerations (assuming Fe(III) is not limiting) these should outcompete sulphate reducers and methanogens (both previously reported from Sombre and Amos Lakes) and could therefore constitute an important component of the anaerobic mineralisation of organic carbon in such lakes.     

Phosphorus–iron interaction in sediments: can an electrode minimize phosphorus release from sediments?

All restoration strategies to mitigate eutrophication depend on the success of phosphorus (P) removal from the water body. Therefore, the inputs from the watershed and from the enriched sediments, that were the sink of most P that has been discharged in the water body, should be controlled. In sediments, iron (hydr)oxides minerals are potent repositories of P and the release of P into the water column may occur upon dissolution of the iron (hydr)oxides mediated by iron reducing bacteria. Several species of these bacteria are also known as electroactive microorganisms and have been recently identified in lake sediments. This capacity of bacteria to transfer electrons to electrodes, producing electricity from the oxidation of organic matter, might play a role on P release in sediments. In the present work it is discussed the relationship between phosphorus and iron cycling as well as the application of an electrode to work as external electron acceptor in sediments, in order to prevent metal bound P dissolution under anoxic conditions.     

湖泊氮素氧化及脱氮过程研究进展

自然界中氮的生物地球化学循环主要由微生物驱动,由固氮作用、硝化作用、反硝化作用和氨化作用来完成。过去数十年间,随着异养硝化、厌氧氨氧化和古菌氨氧化作用的发现,人们对环境中氮素循环认识逐步深入,提出了多种脱氮途径新假说。对湖泊生态系统中氮素的输入、输出及其在水体、沉积物和水土界面的迁移转化过程进行了概括,对湖泊生态系统中反硝化和厌氧氨氧化脱氮机理及脱氮效率的最新研究进展进行了探讨,并对以后的氮素循环研究进行了展望。     

The importance of sediment phosphorus release in the restoration of very shallow lakes (The Norfolk Broads,England) and implications for biomanipulation

Phosphorus release from the sediments of very shallow lakes, the Norfolk Broads, can be as high as 278 mgP m^-2 d^-1. These high rates are associated with high total sediment Fe:P ratios and occur when sulphide from sulphate reduction removes Fe(II) from the pore water. There is also evidence that bioturbation from benthic chironomids can enhance phosphorus release rates, particularly in sediments low in total iron. The release of phosphorus from the sediments of these lakes is delaying restoration following the control of phosphorus from sewage discharges. Biomanipulation is being used in these lakes to create clear water and re-establish aquatic macrophytes. This removal of fish has allowed larger populations of benthic chironomid larvae to develop which may result in an increase in the rate of phosphorus release and changes to the pore profiles of dissolved phosphorus, soluble iron and free sulphide.     

Iron:phosphorus ratio in surface sediment as an indicator of phosphate release from aerobic sediments in shallow lakes

Analysis of Danish lakes showed that both mean winter and mean summer concentrations of lake water total phosphorus in the trophogenic zone correlated negatively with the total iron to total phosphorus ratio (Fe:P) in surface sediments. No correlation was found between the water total phosphorus concentration and either the sediment phosphorus concentration alone or with sediment calcium concentration. The increase in total phosphorus from winter to summer, which is partly a function of net internal P-loading, was lowest in lakes with high Fe:P ratios in the surface sediment.A study of aerobic sediments from fifteen lakes, selected as representative of Danish lakes with respect to the sediment Fe and phosphorus content, showed that the release of soluble reactive phosphorus was negatively correlated with the surface sediment Fe:P ratio. Analysis of phosphate adsorption properties of surface sediment from 12 lakes revealed that the capability of aerobic sediments to buffer phosphate concentration correlated with the Fe:P ratio while the maximum adsorption capacity correlated with total iron. Thus, the Fe:P ratio may provide a measure of free sorption sites for orthophosphate ions on iron hydroxyoxide surfaces.The results indicate that provided the Fe:P ratio is above 15 (by weight) it may be possible to control internal P-loading by keeping the surface sediment oxidized. Since the Fe:P ratio is easy to measure, it may be a useful tool in the management of shallow lakes.     

Molecular Existence and Diversity of Nitrite-Dependent Anaerobic Methane Oxidizing (n-Damo) Bacteria in the Lakes of Badain of the Gobi Desert

Nitrite-dependent anaerobic methane oxidation (n-damo) process, mediated by Candidatus Methylomirabilis oxyfera of the candidate phylum NC10, was discovered recently which plays an important role in coupling the global nitrogen and carbon cycles. However, the distribution and diversity of this new anaerobic methane-oxidizing microorganism have not been investigated in desert lakes yet. The present study successfully retrieved n-damo bacterial 16S rRNA and pmoA gene sequences using PCR technique from lakes in Badain Jaran Desert of China. Phylogenetic analyses showed that n-damo bacteria widely occurred in brine and freshwater lakes on the desert with high diversity, including both sediment and water samples. The results of quantitative PCR indicated that the abundance of the 16S rRNA gene in lake sediments varied from 1.12?±?0.68?×?10⁵ to 1.64?±?0.70?×?10⁵ copies g^?1 (dry weight), while that in water samples per milliliter was generally one order of magnitude lower than sediments. Correlation analyses suggested that n-damo bacterial abundance and diversity strongly depended on salinity. In lake sediments, the distribution, abundance, and diversity of n-damo bacteria were significantly associated with depth due to the concentration gradient of the NO_x^- and ammonium. This study provided new insights into both the n-damo community patterns and its interaction with ambient environmental factors in the desert lake ecosystem.     

A Remark on Microorganisms in Lake Sediments with Emphasis on Polyphosphate-accumulating Bacteria

Bacteria which are able to store large amounts of phosphorus as polyphosphate (PP) under aerobic conditions and to release it under anaerobic conditions are utilized for the advanced treatment of sewage. This note presents some results which indicate that PP-accumulating bacteria which possibly participate in the immobilization and release of dissolved phosphate may also be present in lake sediments.     

Nuisance cyanobacteria in an urbanized impoundment: interacting internal phosphorus loading, nitrogen metabolism, and polymixis

Severe nuisance blooms of cyanobacteria, mainly Aphanizomenon and Microcystis, historically have plagued polymictic Ford Lake, one of the most productive warm-water sport fishing lakes in Michigan, U.S.A. Biomass development in the lake is known to be limited by phosphorus. Alternative theories ascribed nuisance conditions either to allochthonous inputs or to internal loading of phosphorus from anoxic sediments. From 2003 to 2009, there was a strong linear relationship between allochthonous total phosphorus income and phosphorus retained within the basin. The relationship had a negative intercept, implying negative retention, or positive export, of phosphorus from the lake from May to September. Mass balance calculations at lake inlet and outlet were consistent with rates of sedimentary phosphorus accumulation measured from sediment cores. Release rates of soluble reactive phosphorus from anoxic sediments were half that of allochthonous inputs. However, severe declines in nitrogen to phosphorus ratio developed in the anoxic, nitrate-poor hypolimnion because accumulation of ammonium was only tenfold that of phosphate. The result was a steep decline in ratio of total nitrogen to total phosphorus during July and August throughout the lake after episodic mixing events, followed by and coinciding with development of heterocystous Aphanizomenon populations. Lake sediment composition determined by X-ray fluorescence in addition to results of sediment core experiments indicates that phosphorus release is governed by an iron trap mechanism such that phosphate and iron are released only when both oxygen and nitrate are depleted.     

不同固磷方式对巢湖沉积物磷吸附行为的影响

内源磷负荷将严重阻碍富营养化湖泊的恢复,其控制技术的关键在于有效增强沉积物吸附磷的能力,而相关研究相对较少。研究以典型富营养化湖泊(巢湖)严重污染区域的沉积物为实验对象,系统比较了常规固磷方式(施用CaCl2、FeCl3、AlCl3与曝气)对沉积物磷吸附行为和间隙水溶解态可反应磷(SRP)浓度的影响。结果表明:施用不同剂量的CaCl2之后,沉积物磷最大吸附量和吸附能均无显著变化,间隙水SRP浓度和沉积物磷平衡浓度(EPC0)仅有较小幅度的下降;FeCl3和AlCl3的施用可明显增加沉积物磷的最大吸附量和吸附能,同时有效降低间隙水SRP浓度和EPC0值,即沉积物显示更强的从水中吸附磷的能力。当同处低剂量水平时,铁能更有效地降低沉积物EPC0值;反之,曝气对沉积物最大吸附量和吸附能均无显著影响,却明显提高了间隙水SRP浓度和沉积物EPC0值,进而导致更强的磷释放风险。故建议将适量铁的施用作为富营养化湖泊沉积物修复的有效技术,且慎用曝气处理。     

Sulfate control of phosphorus availability in lakes

During summer stratification large amounts of phosphorus (P) accumulate in anoxic bottom waters of many lakes due to release of P from underlying sediments. The availability to phytoplankton of this P is inversely related to the Fe:P ratio in bottom waters. Using data from 51 lakes, we tested the hypothesis that sulfate concentration in lake water may be critical in controlling the Fe:P ratio in anoxic bottom waters. Results showed that Fe:P ratios in bottom waters of lakes were significantly (p<0.001) related to surface water sulfate concentrations. The higher Fe:P ratios in low sulfate systems is due not only to higher iron concentrations in anoxic bottom waters but also to lower P concentrations in anoxic waters. Thus, our results suggest that anthropogenically induced increases in sulfate concentrations of waters (e.g. from fossil fuel burning) may have a double effect on P cycling in lakes. Higher sulfate concentrations can both increase the magnitude of P release from sediments as well as increase the availability of P released from sediments into anoxic bottom waters.     

Different patterns of phosphorus release from lake sediments in laboratory experiments

The phosphorus release from surface sediments of eight lakes, mainly shallow lakes in agricultural areas, was studied in laboratory batch experiments with additions of acetate and/ or nitrate. The lake sediments could be separated into three categories. Some sediments did not release phosphorus under any conditions. The second category showed a high phosphorus release rate when acetate was added, in order to stimulate bacterial activity and oxygen consumption. The addition of nitrate, only, stabilized the redox conditions and prevented phosphorus release. This pattern followed the classical theories of Einsele and Mortimer. The third sediment category released phosphorus up to some level which remained constant throughout the experiment, and was independent of acetate and/or nitrate additions.Several extraction procedures and adsorption-desorption experiments were performed in order to characterize the sediment phosphorus and thus explain the different behaviours of the three sediment categories.     

Surficial sediment phosphorus fractions along a biogeochemical gradient in Nyanza (Winam) Gulf, northeastern Lake Victoria and their possible role in phosphorus recycling and internal loading

Different phosphorus fractions and metal element composition of surficial sediments were measured on three occasions in 2005 and 2006 along a transect between Nyanza Gulf and offshore Lake Victoria, in order to assess the potential for sediments to contribute to the water column P concentrations in Lake Victoria. Total phosphorus (TP), apatite phosphorus (AP), inorganic phosphorus (IP) and organic phosphorus (OP) increased in sediments along the gulf towards the main lake while the non-apatite inorganic phosphorus (NAIP) increases were less defined. The longitudinal gradient of sediment TP and its fractions in Nyanza Gulf is a result of high rates of terrigenous input and resuspension and transport of the light, phosphorus rich inorganic and organic matter towards the main lake. TP in the sediment ranged from 812.7 to 1,738 mg/kg dry weight (DW) and was highest in the Rusinga Channel, the exchange zone between the gulf and the main lake. AP was the most important TP fraction, contributing between 35 and 57.3% of TP. Ca content in the sediment was strongly associated with TP and AP in the sediment (r² = 0.92 and 0.98, respectively) in the gulf and the channel, indicating the importance of apatite in controlling P availability in these zones. In the gulf and the Rusinga Channel, the less bioavailable apatite phosphorus dominated, whereas in the deeper main lake OP was the major fraction illustrating the importance of anaerobic release of P from sediments and acceleration of internal P loading in the main lake.     

Chemical and Microbiological Processes as Regulators of the Exchange of Substances between Sediments and Water in Shallow Eutrophic Lakes

It is generally believed that excessive P release from lake sediments, i. e. internal P load, is only a problem in deep lakes with stagnant anaerobic bottom waters. However, substantial amounts of P can also be released from sediments in shallow, well-mixed lakes. The dynamics and magnitude of P release from sediments in these types of lakes are affected primarily by physical factors, such as seasonal variations in water temperature and year-to-year differences in water renewal. These factors, in turn, induce chemical and microbiological processes which regulate the exchange of substances between sediments and water. The fractional distribution of sedimentary P and the chelating capacity of the water are also important factors that can provide insights to the processes involved and their quantitative impact on the P status in shallow, eutrophic lakes.     

杭州西湖北里湖沉积物氮磷内源静态释放的季节变化及通量估算

通过采集北里湖不同季节的柱状芯样,在实验室静态模拟沉积物氨氮(NH+4-N)和可溶解性磷酸盐(PO3-4-P)的释放,同时研究了沉积物间隙水中NH+4-N及PO3-4-P的垂直分布特征.结果表明,沉积物间隙水NH+4-N随深度的增加有上升的趋势,PO3-4-P随深度的增加呈先升后降的趋势.氮、磷营养盐在沉积物—水界面均存在浓度梯度,表明存在自间隙水向上覆水扩散的趋势.沉积物NH+4-N在春季、夏季、秋季、冬季的释放速率分别为0.074 mg·m-2· d-1、0.340mg· m-2· d-1、0.087 mg· m-2· d-1、0.0004 mg·m-2·d-1,pO3-4-P的释放速率则分别为0.340 mg·m-2·d-1、0.518 mg·m-2·d-1、0.094 mg·m-2·d-1、-0.037 mg· m-2·d-1.不同采样点表现出明显的季节和空间差异性,释放速率表现为夏季＞春季、秋季＞冬季.根据静态模拟出的不同季节下内源氮、磷释放速率计算,全湖内源氮、磷营养盐的贡献分别为0.0037、0.0057t/a.该研究可为北里湖富营养化及内源污染的治理提供基础数据.     

Intensity of the microbiological processes of the methane cycle in different types of Baltic lakes

The intensity of the microbiological processes of methane formation (MF) and methane oxidation (MO) was determined in the sediments and water of different types of Baltic lakes. The emission of methane from the lake sediments and methane distribution in the water column of the lakes were studied as functions of the lake productivity and hydrologic conditions. During summers, the intensity of MF in the lake sediments and waters varied from 0.001 to 106 ml CH4/(dm3 day) and from 0 to 3.2 ml CH4/(1 day), respectively, and the intensity of MO in the sediments and water varied from 0 to 11.2 ml CH4/(dm3 day) and from 0 to 1.1 ml CH4/(1 day), respectively. The total methane production (MP) in the lakes varied from 15 to 5000 ml CH4/(m2 day). In anoxic waters, the MP comprised 9-18% of the total PM in the lakes. The consumption of organic carbon for methanogenesis varied from 0.03 to 9.7 g/(m2 day). The role of the methane cycle in the degradation of organic matter in the lakes increased with their productivity.     

High variability in iron-bound organic carbon among five boreal lake sediments

Being both stable carbon sinks and greenhouse gas sources, boreal lake sediments represent significant players in carbon (C) cycling. The release of dissolved organic carbon (DOC) into anoxic water is a widespread phenomenon in boreal lakes with impact on sediment C budgets. The association of OC with iron (Fe) is assumed to play an important role for this anoxic OC release via the dissimilatory reduction of Fe, but also to influence the stabilization of OC in sediments. To investigate the role of Fe–OC association for OC dynamics in different boreal lake sediments, we compared the content of Fe-bound OC [Fe–OC, defined as citrate bicarbonate dithionite (CBD) extractable OC] and the extent of reductive dissolution of solid-phase Fe and OC at anoxia. We found high among-lake variability in Fe–OC content, and while the amount of Fe–OC was high in three of the lakes (980–1920 µmol g^?1), the overall contribution of Fe–OC to the sediment OC pool in all study lakes was not higher than 11%. No linkages between the amount of the Fe–OC pool and lake or sediment characteristics (e.g., pH, DOC concentration, sediment OC content, C:N ratio) could be identified. The observed release of OC from anoxic sediment may be derived from dissolution of Fe–OC in the lake sediments with high Fe–OC, but in other lake sediments, OC release during anoxia exceeded the sediment Fe–OC pool, indicating low contribution of reductive Fe dissolution to OC release from these lake sediments. The range of the investigated boreal lakes reflects the high variability in the size of the sediment Fe–OC pool (0–1920 µmol g^?1) and CBD-extractable Fe (123–4050 µmol g^?1), which was not mirrored in the extent of reductive dissolution of Fe (18.9–84.6 µmol g^?1) and OC (1080–1700 µmol g^?1) during anoxia, suggesting that Fe-bound OC may play a minor role for sediment OC release in boreal lakes. However, studies of redox-related OC cycling in boreal lake sediments should consider that the amount of Fe–OC can be high in some lakes.