A molecular view of microbial diversity in a dynamic landfill in Québec

An Aroclor 1260 (polychlorinated biphenyl, PCB)-laden soil and one heavily contaminated with polycyclic aromatic hydrocarbons (PAHs) from a secure, engineered landfill site in Québec were analyzed for microbial diversity using a clone library of the 16S rDNA sequences. Phylogenetic analysis revealed that three phyla and their major subdivisions of the domain Bacteria were highly represented in these samples despite the high pollution, particularly by PAHs. None of the 16S rDNA sequences obtained matched known sequences from cultivated bacterial species or from 16S rDNA sequences amplified directly from other environmental samples.     

Phytoextraction of soil trace elements by willow during a phytoremediation trial in Southern Québec,Canada

The phytoextraction of the trace elements (TEs) As, Cd, Cu, Ni, Pb, and Zn by willow cultivars (Fish Creek, SV1 and SX67) was measured during a 3-year field trial in a mildly contaminated soil. Biomass ranged from 2.8 to 4.4 Mg/ha/year at 30,000 plants/ha. Shoots (62%) were the main component followed by leaves (23%) and roots (15%). Biomass was positively linked to soluble soil dissolved organic carbon, K, and Mg, while TEs, not Cd and Zn, had a negative effect. The TE concentration ranking was: Zn > Cu > Cd > Ni, Pb > As, and distribution patterns were: (i) minima in shoots (As, Ni), (ii) maxima in leaves (Cd, Zn), or (iii) maxima in roots (Cu, Pb). Correlations between soil and plant TE were significant for the six TEs in roots. The amounts extracted were at a maximum for Zn, whereas Fish Creek and SV1 extracted more TE than SX67. More than 60% (91–94% for Cd and Zn) of the total TE was in the aboveground parts. Uptake increased with time because of higher biomass. Fertilization, the selection of cultivars, and the use of complementary plants are required to improve productivity and Cd and Zn uptake.     

Impact of disturbance on the Holocene development of a temperate peatland (Southern Québec)

A temperate peatland located in the St. Lawrence lowlands (Southern Québec) was studied in order to specify the past influence of natural and anthropogenic disturbances on its postglacial development. Seven profiles were analysed for pollen, macroremains, microfossils, macro- and microcharcoal, and loss-on-ignition. Fire incidence was important between 9300 and 8200 cal b.p. and during the last 300 years. The Early Holocene fires were contemporaneous with local waterlogged conditions, which prevented the destruction of peat. In contrast, the effects of the recent fires were enhanced by surface dryness resulting from the creation of at least six successive ditch networks over the entire peatland. The modification of the local hydrology and the regular occurrence of fire induced profound vegetation changes. The bryophytic carpet notably regressed in favour of a shrubby coverage, dominated by Chamaedaphne calyculata, Aronia melanocarpa and Betula populifolia. The results obtained suggest that rehabilitation of such an ecosystem is realistic, although relatively urgent in order to preserve the relict populations of endangered species, such as Woodwardia virginica and Dendroica palmarum. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Vegetation patterns to characterize stream valleys in Hilly Southern Québec,Canada

Patterns in vegetation landscapes depend on a complex interplay between processes operating at various scales in time and space. Large-scale variations in environmental factors such as climate and landforms set a background in which smaller local-scale processes are involved. Disturbances superimpose variations on environmental factors and are also dependent on these. Stream valleys of hilly land in Southern Québec have been examined at different scales. Vegetation landscape units have been characterized at the level of landform (vegetation pattern), topographic gradient (geosigmassociation) and ecosite (synassociation). Extension of the methodology up to biogeographical units and practical applications are considered. xx]Nomenclature: plants: Scoggan, 1979; phytosociological units: Ansseau \s& Grandtner, 1986 \s& 1988; Theurillat \s& Moravec, 1990a, b. papers presented at the Vth INTECOL Congress at Yokohama 1990.     

Targeted surveillance of raccoon rabies in Québec,Canada

Data from wildlife disease surveillance programs are used to inform implementation of disease control (e.g., vaccination, population reduction) in space and time. We developed an approach to increase detection of raccoon rabies in raccoons (Procyon lotor) and skunks (Mephitis mephitis) of Québec, Canada, and we examined the implications of using this approach for targeted surveillance. First we modeled the probability of a rabid animal relative to environmental characteristics of sampling locations. Rabid animals were more likely to be found in low-lying flat landscapes that had higher proportions of corn-forest edge habitat and hay agriculture, and that were within 20 km of one or more known rabies cases. From the model, we created 2 complementary risk maps to identify areas where rabid animals were most likely to be sampled. One map accounted for habitat and known rabies case locations, and can be used to define an infection zone from which surveillance can be targeted along the periphery to determine if disease is continuing to spread. The other map only accounted for habitat and can be used to locate areas most likely to contain rabid animals when the disease is present. In a further analysis we compared the 2 most successful methods for detecting raccoon rabies in Québec, given the disease was present. Government trapping operations (active surveillance) detected more cases in the short-term, but citizen notification (passive and enhanced) was more effective after 12 trapping days from which the initial rabies case was found. Our approach can benefit wildlife and public health agencies wanting to assess the disease status of regions by targeting surveillance to habitats most likely to contain infected animals and by defining the duration over which sampling methods are effective. © 2011 The Wildlife Society.     

High concentrations of viruses in the sediments of Lac Gilbert, Québec

Viruses were found to be very abundant in the top layer of the sediments of Lac Gilbert, Québec. Viruses were extracted from the sediments using pyrophosphate buffer, and viruses from the diluted extracts were pelleted onto grids and enumerated using transmission electron microscopy. Viral abundance in the sediments ranged from 6.5 × 10⁸ to 1.83 × 10¹⁰ ml^–1, which is 10- to 1,000-fold greater than the number observed in the water column. This increase corresponds well with the 100- to 1,000-fold increase in bacterial abundance in the sediments. Viral abundance differed significantly among the surface sediment samples taken at different bottom depths and among samples taken at different depths of the water column. Viral abundance also varied significantly between the oxic and anoxic zones of the water column and the sediments. The virus-to-bacteria ratio varied greatly among the different sediment sites but not among depths in the water column. Viral abundance in the water column was related to bacterial abundance and chlorophyll concentration, whereas viruses in the sediments were most abundant in sediments with high organic matter content. Elevated viral abundance and their erratic distribution in the sediments suggest that viruses might play an important role in sediment microbial dynamics. Correspondence to: Roxane Maranger     

Area prioritization for biodiversity conservation in Québec on the basis of species distributions: a preliminary analysis

Results are presented which prioritize areas for potential protection in Québec on the basis of biodiversity considerations. These results are relevant to the ongoing public discussion in Québec about designating new parks and refuges so that the province may fulfil its obligations to Canada's Endangered Spaces Campaign. The prioritization algorithm used in this analysis is based on rarity and complementarity. It attempts to sample biodiversity in as area-efficient a way as possible. The biodiversity surrogates used here comprise a subset of 743 species for which data on spatial distributions are publicly available; the analysis begins with 394 species at risk. It is shown that: (i) the existing network of protected areas in Québec does a poor job of protecting these biodiversity surrogates; (ii) adding adjacent areas to this network will not be the optimal way of protecting these biodiversity surrogates; (iii) many of the areas that have highest priority are in southern Québec, which has a high human population density; (iv) because of (iii), designating parks may not be economically or sociologically feasible and more adaptive alternative conservation plans will have to be devised; (v) coastal areas, riparian habitats, and other wetlands should have high priority for protection but are currently very inadequately represented in the reserve network; (vi) there is some reason for concern about the clear-cut logging of boreal forests in northern Québec; and (vii) the islands, Île d'Anticosti and the Îles-de-la-Madeleine, emerge as being of very significant conservation value and plans for the protection of areas on them should be an immediate goal for biodiversity conservation in Québec.     

Biogeography of copepods in lakes and ponds of subarctic Québec,Canada

We aimed to determine whether the copepod assemblages in lakes and ponds of northern Québec, Canada, were closer in composition to those found in southern Québec, or to those reported from the subarctic and arctic. Six calanoid and five cyclopoid species were identified from 37 ponds and lakes located in the region between 55° N and 59° N. Species diversity was generally low, ranging from 0 to 4 species per lake. Dominant species were Leptodiaptomus minutus and Acanthocyclops vernalis. The species assemblages showed high affinity with those found in forested regions of southern Québec. Exceptions were Leptodiaptomus tyrrelli, previously only recorded west of Hudson Bay, and Hesperodiaptomus arcticus, hitherto recorded north of 58° N. Relationships between the lakes, species, and environmental variables were explored using multivariate analysis. Lakes situated along the coast and on two offshore islands clustered together and were characterised by higher conductivity and pH than those lakes located further inland. Leptodiaptomus tyrrelli was common in these coastal lakes. Canonical correspondence analysis revealed statistically significant relationships between copepod distributions and conductivity, dissolved organic carbon and pH. These three variables accounted for 70% of the variation in the species' distribution.     

‘A genealogist's paradise’: France,Québec and the genealogics of race

Genealogy, or the study of one's ancestral patri-lineage, has a long and esteemed pedigree in French Canadian and Québécois history. From Cyprien Tanguay's late-nineteenth-century encyclopedias to René Jetté's updated versions more than a century later, genealogy has been an important component of French Canadian nationalisms. Tracing one's ancestry back to the early St. Lawrence settlement in the seventeenth century has provided Québécois subjects with opportune political and social capital with which to make territorial and national claims legitimate. Through a case study approach, I explain how genealogy provides the grounds upon which Québécois and French subjects remember a shared past. Specifically, I examine a variety of sites of memory in the French countryside, including a museum that relies on ‘genealogics’ to call the French Canadian Québécois back to its roots. As such, I demonstrate how the biological, read as a contemporary articulation of Balibar's notion of the racial supplément necessary to nation building, travels across the Atlantic.     

Birds as surrogates for biodiversity: An analysis of a data set from southern Québec

Surrogacy analysis consists of determining a set of biotic or environmental parameters which can be rapidly assessed in the field and reliably used to prioritize places for biodiversity conservation. Whether adequate surrogate sets exist remains an open and relatively unexplored question though its solution is central to the aims of conservation biology. This paper analyses the surrogacy problem by prioritizing places using surrogate lists and comparing these results with those obtained by using more comprehensive species lists. More specifically, it explores (i) the possibility of using bird distributions, which are often easily available, as surrogates for species at risk (endangered and threatened species), which are presumed to be an important component of biodiversity; and (ii) the methodological question of how spatial scale influences surrogate success. The data set analysed, from southern Québec, is one of the most complete biotic data sets available at the regional scale. Contrary to some previous analyses, the results obtained suggest that the surrogacy problem is potentially solvable.     

Tree-ring analysis of white cedar (Thuja occidentalis L.) archaeological and historical wood in Québec City (Québec,Canada)

In Québec City, a segment of an old wooden palisade built for protection was found buried in situ. The palisade was excavated by the Laval University archaeology field school in 2004–2005, and 29 posts were recovered and sampled. The palisade enclosed the Intendant's Palace compound, which was the residence of the governor of New France at the end of the 17th century. Tree-ring analysis was performed on wood excavated from the Intendant's Palace archaeological site (PDI) and additional wood from two historical military buildings, the Artillery Park (ART) (early 18th century) and the Québec Citadel (CIT) (17th–19th centuries). Wood identification revealed that white cedar (Thuja occidentalis L.) was used for wood construction at the three sites. Many trees used for the construction of the PDI palisade were felled after the 1690 growing season, likely in September/October 1690. Posts probably came from trees growing close to the site on the banks of the Saint-Charles River. A white cedar ring-width chronology from the Rimouski area, approximately 300 km northeast of Québec City, along the St. Lawrence River, was used for cross-dating. Archaeological and historical wood samples from two of the three sites (PDI and ART) were first assembled in a 235-year tree-ring chronology, called the Québec chronology, extending from 1489 to 1723. The two master chronologies (Québec and Rimouski) were merged into a single 513-year tree-ring chronology (1489–2001), called the Saint-Laurent chronology.     

Ichthyophonus-like infection in wild amphibians from Québec, Canada

Myositis associated with infection by Ichthyophonus-like organisms was diagnosed in 35 of 260 (13%) wild amphibians collected in Quebec, Canada, from 1959 to 1964 (n = 30), and 1992 to 1999 (n = 230). Infection was diagnosed in 17 green frogs Rana clamitans, 9 wood frogs R. sylvatica, 4 red-spotted newts Notophthalmus viridescens, 3 bullfrogs R. catesbeiana, 1 spring peeper Pseudacris crucifer, and 1 pickerel frog R. palustris. The spring peeper and one of the bullfrogs were collected in 1964 from the Mont Saint-Hilaire Biosphere Reserve, indicating long-term presence of the organism. Spores of the organisms invaded striated muscle fibers and were associated with variable degrees of granulomatous and eosinophilic inflammation. Infection was considered fatal in 2 green frogs, 1 wood frog, and 1 red-spotted newt. It was considered potentially significant in 3 additional green frogs in which up to 100% of the fibers of some muscles were replaced by spores associated with a severe granulomatous reaction. Ultrastructural features of Ichthyophonus-like spores included a thick trilaminated wall, a paramural cytoplasm, multiple nuclei, oval mitochondria with short tubulo-vesicular cristae and numerous ribosomes. This report represents 4 new host records and shows that ichthyophonosis is enzootic in amphibians from Quebec.     

Hydrocarbons,Pb-Concentrations,and Pb-Isotope Ratios in Contaminated Alluvial Soils (Southern Québec,Canada)

Hydrocarbon-contaminated layers found over 100 kilometers of riverbanks (southern Québec) were investigated. Analytical results for hydrocarbons, trace metals, Pb concentrations, and Pb isotopic signatures (²⁰⁶Pb/²⁰⁷Pb, ²⁰⁸Pb/²⁰⁶Pb, ²⁰⁴Pb/²⁰⁶Pb) of contaminated soil are presented. Soil samples show hydrocarbon concentrations (C₁₀-C₅₀) ranging from <60 to 660 mg kg^?1. Higher concentrations were found in the Richmond site (southern Québec). The values for Pb-concentrations ranged between 7 and 149 mg kg^?1 with median value of 23 mg kg^?1. For the Pb isotope ratios, the values obtained in the hydrocarbon layer range from 1.124 to 1.175 ± 0.011 (²⁰⁶Pb/²⁰⁷Pb), 2.085 to 2.126 ± 0.011 (²⁰⁸Pb/²⁰⁶Pb), and 0.054 to 0.057 ± 0.000 (²⁰⁴Pb/²⁰⁶Pb). The combination of various techniques used allows us to distinguish the various sources of contaminants. The study also reveals that Pb and other trace metal elements continue to be found in the fluvial environment, even after many years, and this soil pollution could affect the quality of streams and living organisms.     

Genetic epidemiology of lipoprotein lipase deficiency in Saguenay-Lac-St-Jean (Québec, Canada).

Familial hyperchylomicronemia due to the lipoprotein lipase (LPL) activity deficiency (Type I hyperlipoproteinemia) is an autosomal recessive disorder with a prevalence estimated at one case per million. Thirty-four type I individuals are known in Saguenay-Lac-St-Jean (SLSJ), a geographically isolated region of Quebec. The prevalence of type I and LPL deficient heterozygote in this region was estimated at 1/6382 and 1/46 inhabitants respectively. The mean inbreeding coefficient was slightly elevated in the type I group compared with three control groups. The mean kinship coefficient was 15.1 times higher in the type I group than in the control groups. The high prevalence of type I in SLSJ appears to be the result of the emigration of carriers of LPL deficiency from Charlevoix, another isolated region of quebec to the SLSJ region. Endogamy also played a crucial role in increasing the prevalence of type I in SLSJ.     

Genotyping by sequencing suggests overwintering of Peronospora destructor in southwestern Québec,Canada

Several Peronospora species are carried by wind over short and long distances, from warmer climates where they survive on living plants to cooler climates. In eastern Canada, this annual flow of sporangia was thought to be the main source of Peronospora destructor responsible for onion downy mildew. However, the results of a recent study showed that the increasing frequency of onion downy mildew epidemics in eastern Canada is associated with warmer autumns, milder winters, and previous year disease severity, suggesting overwintering of the inoculum in an area where the pathogen is not known to be endogenous. In this study, genotyping by sequencing was used to investigate the population structure of P. destructor at the landscape scale. The study focused on a particular region of southwestern Québec—Les Jardins de Napierville—to determine if the populations were clonal and regionally differentiated. The data were characterized by a high level of linkage disequilibrium, characteristic of clonal organisms. Consequently, the null hypothesis of random mating was rejected when tested on predefined or nonpredefined populations, indicating that linkage disequilibrium was not a function of population structure and suggesting a mixed reproduction mode. Discriminant analysis of principal components performed with predefined population assignment allowed grouping P. destructor isolates by geographical regions, while analysis of molecular variance confirmed that this genetic differentiation was significant at the regional level. Without using a priori population assignment, isolates were clustered into four genetic clusters. These results represent a baseline estimate of the genetic diversity and population structure of P. destructor.     

Forest Floor Bacterial Community Composition and Catabolic Profiles in Relation to Landscape Features in Québec’s Southern Boreal Forest

Bacterial communities mediate many of the processes in boreal forest floors that determine the functioning of these ecosystems, yet it remains uncertain whether the composition of these communities is distributed nonrandomly across the landscape. In a study performed in the southern boreal mixed wood forest of Québec, Canada, we tested the hypothesis that stand type (spruce/fir, aspen, paper birch), stand age (57, 78–85, and 131 years old), and geologic parent material (clay and till) were correlated with forest floor bacterial community composition. Forest floors in 54 independent forest stands were sampled to comprise a full factorial array of the three predictor variables. Bacterial community structure was examined by terminal restriction fragment (T-RF) length polymorphism analysis of genes encoding for 16S rRNA. Distance-based redundancy analysis of T-RF assemblages revealed that each predictor variable, as well as their interaction terms, had a significant effect on bacterial community composition, geologic parent material being the most discriminating factor. A survey of the 15 T-RFs with the highest percentage fit on the first two ordination axes describing the main effects indicated that each landscape feature correlated to a distinct group of bacteria. A survey of the most discriminant T-RFs describing the effect of stand type within each combination of stand age and geologic parent material indicated a strong dependency of several T-RFs on geologic parent material. Given the possible link between bacterial community composition and forest floor functioning, we also assessed the effects of the same three landscape features on community-level catabolic profiles (CLCP) of the extractable forest floor microbiota. Geologic parent material and stand type had significant effects on CLCPs. On clay plots, the effects of landscape features on T-RF patterns were highly consistent with their effects on CLCPs. In light of our results, we suggest that future research examine whether bacterial community composition or CLCPs can be used to detect latent environmental changes across landscape units.