Species Composition, Diversity and Local uses of Tropical Dry Deciduous and Gallery Forests in Nicaragua

The floristic composition and diversity of tropical dry deciduous and gallery forests were studied in Chacocente Wildlife Refuge, located on the Pacific coast in Nicaragua during 1994 and 2000. Density, dominance and frequency as well as species and family important values were computed to characterize the floristic composition. A variety of diversity measures were also calculated to examine heterogeneity in each forest community. A total of 29 families, 49 genera and 59 species were represented in 2 ha dry deciduous forest. In the gallery forest, the number of families, genera and species recorded in 2000 inventory was 33, 48 and 58, respectively and slightly higher than the 1994 inventory. The number of stems ⩽ 10 cm dbh varied from 451 to 489 per hectare in the deciduous forest, and from 283 to 298 per hectare in the gallery forest. The basal area was much larger for species in the gallery than dry deciduous forest. Fabaceae, sub family Papilionoideae, was the most specious family in the deciduous forest while Meliaceae was the dominant family in the gallery forest. Similarity in species composition and abundance between deciduous and gallery forests was low. In terms of species diversity, the gallery forest was found more diverse than the deciduous forest using Fisher's diversity index. Both forest communities were characterized by a typical inverse J shape. Therefore, emphasis should be given to the protection of rare species, i.e. as the forests are still under continued human pressure, an immediate action should be taken to conserve the remaining flora.     

Habitat Fragmentation and Burying Beetle Abundance and Success

Four species of burying beetle (Nicrophorus marginatus F., N. tomentosus Weber, N. orbicollis Say and N. defodiens Mannerheim) are attracted to small, fresh mouse carcasses in northern Michigan. The number of burying beetles and their success (burial of a carcass) were greater in woodlands than in edge or field habitats. Species diversity was least in open fields as assessed by two different indices of diversity. Nicrophorus marginatus was the only species captured in large fields (<25ha). This species was never trapped in small fields (>5ha) suggesting that a minimum habitat size might be necessary to maintain local populations. In contrast to previous studies which employed pitfall traps baited with a large quantity of carrion, N. tomentosus was caught exclusively in woodlands at single mouse carcasses. In Connecticut woodlands, burying beetle success, assayed as the proportion of carcasses buried and held for 7 days, was significantly greater in larger as compared to smaller woodlands. The limited success of burying beetles in smaller woodlands was due, in part, to a higher rate of scavenging by vertebrates.     

Habitat Fragmentation Effects on the Orchid Bee Communities in Remnant Forests of Southeastern Brazil

The effect of habitat fragmentation on the structure of orchid bee communities was analyzed by the investigation of the existence of a spatial structure in the richness and abundance of Euglossini species and by determining the relationship between these data and environmental factors. The surveys were carried out in four different forest fragments and one university campus. Richness, abundance, and diversity of species were analyzed in relation to abiotic (size of the area, extent of the perimeter, perimeter/area ratio, and shape index) and biotic characteristics (vegetation index of the fragment and of the matrix of each of the locations studied). We observed a highly significant positive correlation between the diversity index and the vegetation index of the fragment, landscape and shape index. Our analysis demonstrated that the observed variation could be explained mainly by the vegetation index and the size of the fragment. Variations in relative abundance showed a tendency toward an aggregated spatial distribution between the fragments studied, as well as between the sampling stations within the same habitat, demonstrating the existence of a spatial structure on a small scale in the populations of Euglossini. This distribution will determine the composition of species that coexist in the area after fragmentation. These data help in understanding the differences and similarities in the structure of communities of Euglossini resulting from forest fragmentation.     

Effects of Habitat Fragmentation on Abundance,Larval Food and Parasitism of a Spider-Hunting Wasp

Habitat fragmentation strongly affects species distribution and abundance. However, mechanisms underlying fragmentation effects often remain unresolved. Potential mechanisms are (1) reduced dispersal of a species or (2) altered species interactions in fragmented landscapes. We studied if abundance of the spider-hunting and cavity-nesting wasp Trypoxylon figulus Linnaeus (Hymenoptera: Crabronidae) is affected by fragmentation, and then tested for any effect of larval food (bottom up regulation) and parasitism (top down regulation). Trap nests of T. figulus were studied in 30 agricultural landscapes of the Swiss Plateau. The sites varied in the level of isolation from forest (adjacent, in the open landscape but connected, isolated) and in the amount of woody habitat (from 4 % to 74 %). We recorded wasp abundance (number of occupied reed tubes), determined parasitism of brood cells and analysed the diversity and abundance of spiders that were deposited as larval food. Abundances of T. figulus were negatively related to forest cover in the landscape. In addition, T. figulus abundances were highest at forest edges, reduced by 33.1% in connected sites and by 79.4% in isolated sites. The mean number of spiders per brood cell was lowest in isolated sites. Nevertheless, structural equation modelling revealed that this did not directly determine wasp abundance. Parasitism was neither related to the amount of woody habitat nor to isolation and did not change with host density. Therefore, our study showed that the abundance of T. figulus cannot be fully explained by the studied trophic interactions. Further factors, such as dispersal and habitat preference, seem to play a role in the population dynamics of this widespread secondary carnivore in agricultural landscapes.     

Effects of Forest Fragmentation on Pteridophyte Diversity in a Tropical Rain Forest in Brazil

The impacts of forest fragmentation on the pteridophyte communities of the Una region of Bahia, Brazil, were investigated by comparing species richness and ensemble diversity among areas of large forest fragments (>900 ha), small forest fragments (<100 ha), and landscape matrix. We inventoried the pteridophytes below 1 m in height in interiors of small fragments, interiors of large fragments (control areas), edges of fragments, edges of continuous forest, capoeiras (initial stages of forest regeneration) and cabrucas (cocoa plantations). All ferns were collected following the plot method (plots of 120×10 m, each). Sampling units were established in the six main ecotypes of the Una region. These units were allocated within three sampling blocks of 5 per 5 km, which were chosen in order to include the largest forest patches that still remain. Results suggest that fragmentation has a negative impact on species richness at the matrix and the edges of forest remnants. A similar negative matrix end edge effect is reported for diversity of those sites measured by the α Log-series Index. However, small forest fragments have pteridophyte species richness and diversity rates similar to large ones so they should be considered of utmost importance to the conservation of forest-related species in the region.     

Simulating the Long-term Response of Tropical Wet Forests to Fragmentation

In the coming decades, a large fraction of the world's tropical forests will be fragmented into remnants surrounded by secondary vegetation, land-use areas, or roads. It is important to develop integrative tools to monitor the evolution of these fragmented ecosystems. We used the individual-oriented and process-based forest growth simulator FORMIND2.0 to investigate the spatial and temporal effects on standing biomass and functional diversity of various intensities and patterns of fragmentation within a forest landscape. The simulator was calibrated for an old-growth wet forest in French Guiana, South America. We found that the standing biomass of forest remnants was reduced significantly compared to a similar area of nonfragmented forest. When fewer but larger remnants were created rather than many small ones, the total loss in biomass and the increase in the abundance of early-successional species were significantly reduced, confirming that edge effects dominate the functioning of forest remnants. We also performed simulations of secondary succession after the landscape had been abandoned. The simulated recovery time in those secondary forests depends on both the size of cleared area and the spatial pattern of the remnant forests. Received 30 January 2002; accepted 16 July 2002.     

Cladocera Diversity,Abundance and Habitat in a Western Thailand Stream

Longitudinal and temporal distribution was determined for 40 species of cladocerans at sites between the headwaters and mouth of Khayeng Stream, a relatively pristine waterway in western Thailand. Cladocerans were confined mostly to lentic areas and abundance between April and September was highest in September, largely a consequence of a floodplain that developed near the mouth. Species richness was related directly to cladoceran abundance. Cladocerans were dominated numerically by three species, Ceriodaphnia cornuta, Diaphanosoma excisum, and D. sarsi. Most species were accommodated within four assemblages. Conductivity, water velocity, pH and temperature were important to species distribution, particularly velocity and conductivity. The most common assemblage was also the most speciose and occurred in moderate total abundance. The second assemblage was also speciose but low in total abundance. Species abundance in groups 1 and 2 tended to be positively related to conductivity and negatively, but weakly, related to pH and temperature. The third assemblage consisted of a single species and occurred in water of low conductivity while the fourth assemblage contained few species and low in overall abundance.     

Effect of Habitat Patch Characteristics on Abundance and Diversity of Insects in an Agricultural Landscape

The objective of this study was to test for general effects of patch size, patch isolation, disturbance frequency, and patch life span, on density and diversity of organisms. We sampled predominantly herbivorous insects in 31 alfalfa fields that varied in size, isolation, frequency of disturbance by cutting, and age (number of years planted in alfalfa). Effects on insect relative density and diversity were examined at three taxonomic levels: all insects, eight separate orders, and six legume-specialist weevil species. We found that (a) more isolated alfalfa fields had higher overall insect richness, (b) fields with higher disturbance frequency had lower overall insect richness, and (c) fields of intermediate age had highest insect richness. In some cases these patterns were reflected at lower taxonomic levels, but in many cases they were not. These results are important because they indicate that, although we cannot simultaneously tailor a landscape for each of thousands of species, we may be able to produce desired effects at a more general level. Received 8 August 1997; accepted 2 January 1998.     

Patterns of Rodent Species Diversity and Abundance in a Kenyan Relict Tropical Rainforest

Patterns of rodent species abundance and diversity were examined over a 5 months period in two areas of a Kenyan relict tropical rainforest. The two areas are subjected to different administrations which lead to various levels of anthropogenic disturbance: one can be considered relatively disturbed and one relatively undisturbed. Anthropogenic disturbance causes a reduction in woody stem density between 0 and 1.5 m and reduced understory tree canopy cover. Rodent abundance was estimated using the program CAPTURE and compared with the number of individuals actually captured. Density was estimated with three different methods, two of these utilised a boundary strip to estimate effective size of the area trapped. Density resulted in being relatively high in both areas, so population might have been at a peak. Species richness was higher in the disturbed forest, while species diversity and evenness was higher in the undisturbed forest. We suggest that in the disturbed forest the increase in number of species might be due to sporadical entrance in the forest by non-forest species, while the decrease in diversity might be due to the decrease of lower strata vegetation that occurs in the disturbed forest, hence this factor might affect species equitability. Bibliographic data supports this hypothesis as rodent species diversity and ground vegetation cover have been found to be correlated.     

Effects of Fragmentation of Evergreen Broad-leaved Forests on Genetic Diversity of Ardisia Crenata var. Bicolor (Myrsinaceae)

Due to the long generation times and high densities, dominant tree species usually did not respond consistently with theoretical predictions to the recent fragmentation. Genetic structures of shrubs and herbs, especially those with low densities, may be more sensitive to forest fragmentation. We studied the genetic structure of a self-compatible subshrub, Ardisia crenata var. bicolor (Myrsinaceae) in a recently fragmented landscape. Ten RAPD primers used for analysis generated a total of 76 bands. We found that A. c. var. bicolor had relatively low species-level (P₉₅ = 63.2%; H = 0.106; Shannon diversity index (SI) = 0.246) and within-population diversity (P₉₅ = 5.3−46.1%; H = 0.026−0.175; SI = 0.032−0.253), and significant population differentiation (G_ST = 0.445). Significantly positive relationships were found between measures of diversity (P₉₅, H and SI) and the log of estimated population size. No significant relationship was observed between Nei's genetic distance and spatial distance of pairwise populations, indicating no isolation-by-distance. Given most species of forests are shrubs and herbs with short generation times, our observation indicated that distinct genetic consequences of recent fragmentation may be expected for quite a number of plant species.     

Community Structure of Fishes and Habitat Complexity on a Tropical Rocky Shore

The relationship between the variables of reef fish community structure (fish richness, fish diversity and total number of fishes) and those of habitat complexity (total surface area, substratum diversity, topographic complexity, number of holes, percent cover of turf algae, zoanthids, millepores, massive corals, bare rock, encrusting calcareous algae, urchins, other sessile organisms and Sargassum) were examined on three different rocky shores (FA, FB and FT) at Arraial do Cabo, a tropical region located on Brazilian southeastern coast (23° S, 42° W). Fish abundance and vertical distribution were assessed by a visual census technique using strip transects. Percentage cover of benthic organisms and other substratum types were calculated by replicated transects using a chain laid down on the substratum. Topographic complexity was determined by the chain link method and number of holes were estimated by direct counts on replicated transects. More than 91 fishes belonging to 37 families were seen in all study sites during one year of visual census effort. FA and FB sites had similar fish community structure and habitat complexity characteristics, while FT showed different habitat characteristics and higher fish diversity and richness, plus total number of fishes. Vertical distribution of fishes along the rocky shores studied seemed to be predictable and was determined by factors such as feeding habits and behavior, availability of refuges and social interactions. The habitat variables that best explained the higher diversity and number of fishes observed in FT site were total surface area of rocky shores and the abundance of benthic sessile invertebrates; these conditions were typical of rocky shores more exposed to wave surge.     

Non-Additive Effects of Genotypic Diversity Increase Floral Abundance and Abundance of Floral Visitors

Background

In the emerging field of community and ecosystem genetics, genetic variation and diversity in dominant plant species have been shown to play fundamental roles in maintaining biodiversity and ecosystem function. However, the importance of intraspecific genetic variation and diversity to floral abundance and pollinator visitation has received little attention.

Methodology/Principal Findings

Using an experimental common garden that manipulated genotypic diversity (the number of distinct genotypes per plot) of Solidago altissima, we document that genotypic diversity of a dominant plant can indirectly influence flower visitor abundance. Across two years, we found that 1) plant genotype explained 45% and 92% of the variation in flower visitor abundance in 2007 and 2008, respectively; and 2) plant genotypic diversity had a positive and non-additive effect on floral abundance and the abundance of flower visitors, as plots established with multiple genotypes produced 25% more flowers and received 45% more flower visits than would be expected under an additive model.

Conclusions/Significance

These results provide evidence that declines in genotypic diversity may be an important but little considered factor for understanding plant-pollinator dynamics, with implications for the global decline in pollinators due to reduced plant diversity in both agricultural and natural ecosystems.     

Spatial Scaling Effects on Soil Bacterial Communities in Malaysian Tropical Forests

Spatial scaling to some extent determines biodiversity patterns in larger organisms, but its role in microbial diversity patterns is much less understood. Some studies have shown that bacterial community similarity decreases with distance, whereas others do not support this. Here, we studied soil bacterial communities of tropical rainforest in Malaysia at two spatial scales: a local scale with samples spaced every 5 m over a 150-m transect, and a regional scale with samples 1 to 1,800 km apart. PCR-amplified soil DNA for the bacterial 16S rRNA gene targeting the V1–V3 region was pyrosequenced using Roche/454 GS FLX Titanium platform. A ranked partial Mantel test showed a weak correlation between spatial distance and whole bacterial community dissimilarity, but only at the local scale. In contrast, environmental distance was highly correlated with community dissimilarity at both spatial scales, stressing the greater role of environmental variables rather than spatial distance in determining bacterial community variation at different spatial scales. Soil pH was the only environmental parameter that significantly explained the variance in bacterial community at the local scale, whereas total nitrogen and elevation were additional important factors at the regional scale. We obtained similar results at both scales when only the most abundant OTUs were analyzed. A variance partitioning analysis showed that environmental variables contributed more to bacterial community variation than spatial distance at both scales. In total, our results support a strong influence of the environment in determining bacterial community composition in the rainforests of Malaysia. However, it is possible that the remaining spatial distance effect is due to some of the myriad of other environmental factors which were not considered here, rather than dispersal limitation.     

Habitat Fragmentation and Ecological Traits Influence the Prevalence of Avian Blood Parasites in a Tropical Rainforest Landscape

In the tropical rainforests of northern Australia, we investigated the effects of habitat fragmentation and ecological parameters on the prevalence of blood-borne parasites (Plasmodium and Haemoproteus) in bird communities. Using mist-nets on forest edges and interiors, we sampled bird communities across six study sites: 3 large fragments (20–85 ha) and 3 continuous-forest sites. From 335 mist-net captures, we recorded 28 bird species and screened 299 bird samples with PCR to amplify and detect target DNA. Of the 28 bird species sampled, 19 were infected with Plasmodium and/or Haemoproteus and 9 species were without infection. Over one third of screened birds (99 individuals) were positive for Haemoproteus and/or Plasmodium. In forest fragments, bird capture rates were significantly higher than in continuous forests, but bird species richness did not differ. Unexpectedly, we found that the prevalence of the dominant haemosporidian infection, Haemoproteus, was significantly higher in continuous forest than in habitat fragments. Further, we found that ecological traits such as diet, foraging height, habitat specialisation and distributional ranges were significantly associated with blood-borne infections.     

Effects of Forest Age on Soil Autotrophic and Heterotrophic Respiration Differ between Evergreen and Deciduous Forests

We examined the effects of forest stand age on soil respiration (SR) including the heterotrophic respiration (HR) and autotrophic respiration (AR) of two forest types. We measured soil respiration and partitioned the HR and AR components across three age classes ∼15, ∼25, and ∼35-year-old Pinus sylvestris var. mongolica (Mongolia pine) and Larix principis-rupprechtii (larch) in a forest-steppe ecotone, northern China (June 2006 to October 2009). We analyzed the relationship between seasonal dynamics of SR, HR, AR and soil temperature (ST), soil water content (SWC) and normalized difference vegetation index (NDVI, a plant greenness and net primary productivity indicator). Our results showed that ST and SWC were driving factors for the seasonal dynamics of SR rather than plant greenness, irrespective of stand age and forest type. For ∼15-year-old stands, the seasonal dynamics of both AR and HR were dependent on ST. Higher Q₁₀ of HR compared with AR occurred in larch. However, in Mongolia pine a similar Q₁₀ occurred between HR and AR. With stand age, Q₁₀ of both HR and AR increased in larch. For Mongolia pine, Q₁₀ of HR increased with stand age, but AR showed no significant relationship with ST. As stand age increased, HR was correlated with SWC in Mongolia pine, but for larch AR correlated with SWC. The dependence of AR on NDVI occurred in ∼35-year-old Mongolia pine. Our study demonstrated the importance of separating autotrophic and heterotrophic respiration components of SR when stimulating the response of soil carbon efflux to environmental changes. When estimating the response of autotrophic and heterotrophic respiration to environmental changes, the effect of forest type on age-related trends is required.     

Influence of Habitat Fragmentation on the Genetic Variability in Leaf Litter Ant Populations in Tropical Rainforests of Sabah, Borneo

Two ant species, Odontomachus rixosus and Pheidole annexus, were studied in the tropical rainforests of Sabah, Malaysia, North Borneo, to analyze the impact of habitat fragmentation on the genetic diversity and population structure of ant populations using RAPD-fingerprinting. Ants were sampled in a contiguous (43,800 ha) and three patches of primary rainforests of varying size (4294, 146 and 20 ha) that were fragmented about 40 years ago. We found a decrease in genetic variability for both species in the fragmented populations compared to the contiguous. Genetic distances between populations resembled the geographical arrangement of populations and can be explained by an effect of isolation by distance. A high degree in population subdivision suggests a lack of meta-population dynamics due to a shortage of gene flow between populations, possibly the result of the high degree of habitat isolation by oil palm plantations. Although the results of this study are limited due to low replication this is the first data on genetic patterns of insect populations in fragmented rainforests and should be seen as starting point for future research. The value of small to medium sized protection areas for conservation needs to be carefully evaluated in the context of this study, as even relatively large areas (4294 ha) may not prevent the critical loss of genetic variability and guarantee long-term survival of organisms.     

Contrasting Responses of Saproxylic Insects to Focal Habitat Resources: The Example of Longhorn Beetles and Hoverflies in Belgian Deciduous Forests

Although both saproxylic longhorn beetles and hoverflies benefit from the presence of woody substrates for reproduction, they differ in their requirements for floral resources and for microbiotopes of overmature and senescent trees. This led us to expect contrasting responses between the two species groups in relation to these essential resources. We examined this prediction in 22 mature oak- and beech-dominated stands of southern Belgium by relating their species assemblages to local vegetation structure and composition, altitude and landscape composition. Stands were organised in pairs as a function of their overall dead wood supply. Free-hanging window traps, stump emergence traps and Malaise traps produced 30 longhorn beetle species (1637 individuals) and 106 hoverfly species (3020 individuals). Paired-comparisons controlling for annual variation in captures showed that, unlike saproxylic hoverflies, stands with dead wood hosted more species and individuals of longhorn beetles. Accordingly, the two species groups were found to be independent on ordination axes, responding to different sets of environmental conditions. While stands dominated by oaks with a high snag volume were highly favoured by longhorn beetles, saproxylic and threatened syrphids were limited to open-stands with large trees and a well-developed, species rich herb layer providing the floral resources required for their reproduction. Our results suggest that, when defining criteria to identify or restore important habitats for saproxylic insect conservation, variables related to different aspects of dead wood supply should not be the only criteria taken into account.