五个箭筈豌豆品系基因型与环境互作效应及农艺性状稳定性

通过 2 a、4个区试点和 5种基因型及其互作效应研究 ,运用混合线性模型和 MINQU E(1)法 ,对箭豌豆包括株高在内的9个农艺性状可塑性进行评价 ,揭示了年份和区试点的生态环境效应、基因型与生态环境互作效应对各农艺性状的可塑性。结果表明 ,种子产量和千粒重等性状的基因型与生态环境互作效应达到了极显著水平 (p <0 .0 1和 p<0 .0 0 1)。生态环境分量 (年份、区试点、年份×区试点 )对各农艺性状的可塑性贡献较大 ,同时在不同生态环境间各农艺性状间差异达到了显著水平 (p <0 .0 5)。其中区试点分量对各农艺性状的可塑性贡献最大 ,各农艺性状在 4个区试点之间差异达到了显著水平 (p<0 .0 1) ,肃南和天祝的 2个区试点的牧草干重和种子产量等重要农艺性状的平均值显著大于另 2个区试点。各农艺性状在不同年份间差异达到了极显著水平 (p<0 .0 1) ,2 0 0 2年各农艺性状的平均值显著优于 2 0 0 1年。牧草干重和种子产量数量性状与气候因子的相关分析表明 ,5～ 8月份的月均温对牧草干重和种子产量的影响作用较大 ,较高的温度有利于牧草干重和种子产量的提高 ;7月份的降水量与牧草干重和种子产量存在一定程度的正相关关系。品系 2 556和 2 560在进行了基因型与环境互作效应稳定性评价后 ,4个区试点两年间都     

Multiple-breed reaction norm animal model accounting for robustness and heteroskedastic in a Nelore–Angus crossed population

Our objective was to genetically characterize post-weaning weight gain (PWG), over a 345-day period after weaning, of Brangus-Ibagé (Nelore×Angus) cattle. Records (n=4016) were from the foundation herd of the Embrapa South Livestock Center. A Bayesian approach was used to assess genotype by environment (G×E) interaction and to identify a suitable model for the estimation of genetic parameters and use in genetic evaluation. A robust and heteroscedastic reaction norm multiple-breed animal model was proposed. The model accounted for heterogeneity of residual variance associated with effects of breed, heterozygosity, sex and contemporary group; and was robust with respect to outliers. Additive genetic effects were modeled for the intercept and slope of a reaction norm to changes in the environmental gradient. Inference was based on Monte Carlo Markov Chain of 110 000 cycles, after 10 000 cycles of burn-in. Bayesian model choice criteria indicated the proposed model was superior to simpler sub-models that did not account for G×E interaction, multiple-breed structure, robustness and heteroscedasticity. We conclude that, for the Brangus-Ibagé population, these factors should be jointly accounted for in genetic evaluation of PWG. Heritability estimates increased proportionally with improvement in the environmental conditions gradient. Therefore, an increased proportion of differences in performance among animals were explained by genetic factors rather than environmental factors as rearing conditions improved. As a consequence response to selection may be increased in favorable environments.     

Importance of adaptation and genotype × environment interactions in tropical beef breeding systems

This paper examines the relative importance of productive and adaptive traits in beef breeding systems based on Bos taurus and tropically adapted breeds across temperate and (sub)tropical environments. In the (sub)tropics, differences that exist between breeds in temperate environments are masked by the effects of environmental stressors. Hence in tropical environments, breeds are best categorised into breed types to compare their performance across environments. Because of the presence of environmental stressors, there are more sources of genetic variation in tropical breeding programmes. It is therefore necessary to examine the genetic basis of productive and adaptive traits for breeding programmes in those environments. This paper reviews the heritabilities and genetic relationships between economically important productive and adaptive traits relevant to (sub)tropical breeding programmes. It is concluded that it is possible to simultaneously genetically improve productive and adaptive traits in tropically adapted breeds of beef cattle grazed in tropical environments without serious detrimental consequences for either adaptation or production. However, breed-specific parameters are required for genetic evaluations. The paper also reviews the magnitude of genotype × environment (G × E) interactions impacting on production and adaptation of cattle, where 'genotype' is defined as breed (within a crossbreeding system), sire within breed (in a within-breed selection programme) or associations between economically important traits and single nucleotide polymorphisms (SNPs - within a marker-assisted selection programme). It is concluded that re-ranking of breeds across environments is best managed by the use of the breed type(s) best suited to the particular production environment. Re-ranking of sires across environments is apparent in poorly adapted breed types across extreme tropical and temperate environments or where breeding animals are selected in a temperate environment for use in the (sub)tropics. However, G × E interactions are unlikely to be of major importance in tropically adapted beef cattle grazed in either temperate or (sub)tropical environments, although sex × environment interactions may provide new opportunities for differentially selecting to simultaneously improve steer performance in benign environments and female performance in harsher environments. Early evidence suggests that re-ranking of SNPs occurs across temperate and tropical environments, although their magnitude is still to be confirmed in well-designed experiments. The major limitation to genetic improvement of beef cattle over the next decade is likely to be a deficiency of large numbers of accurately recorded phenotypes for most productive and adaptive traits and, in particular, for difficult-to-measure adaptive traits such as resistance to disease and environmental stressors.     

Temperature reaction norms of Daphnia magna: the effect of food concentration

1. The effects of temperature and food concentration on the fitness of Daphnia magna were tested in a 4×4 factorial flow-through design. Food ranged from 0.1 to 1.0 mg C L⁻¹ and temperature ranged from 15 to 30 °C. 2. The juvenile growth rate ( g _j) was used to construct reaction norms for temperature at varying food concentrations. Two clones isolated from the same pond at different seasons did not differ with respect to their temperature responses. Reaction norms had the shape of an optimum curve with highest values around 20 °C. There was a significant temperature–food interaction as the temperature response was most pronounced when the food was not limiting. 3. Differences in fitness were a consequence of different responses of physiological parameters to food and temperature. Age and size at first reproduction, as well as egg numbers, decreased with increasing temperature and decreasing food concentration. 4. As the temperature effect was strongest at the highest food concentrations, it can be concluded that environmental warming may affect D. magna more through a temperature rise earlier in spring rather than in summer.     

Random regression models for detection of gene by environment interaction

Two random regression models, where the effect of a putative QTL was regressed on an environmental gradient, are described. The first model estimates the correlation between intercept and slope of the random regression, while the other model restricts this correlation to 1 or -1, which is expected under a bi-allelic QTL model. The random regression models were compared to a model assuming no gene by environment interactions. The comparison was done with regards to the models ability to detect QTL, to position them accurately and to detect possible QTL by environment interactions. A simulation study based on a granddaughter design was conducted, and QTL were assumed, either by assigning an effect independent of the environment or as a linear function of a simulated environmental gradient. It was concluded that the random regression models were suitable for detection of QTL effects, in the presence and absence of interactions with environmental gradients. Fixing the correlation between intercept and slope of the random regression had a positive effect on power when the QTL effects re-ranked between environments.     

Reaction norms of Arabidopsis. I. Plasticity of characters and correlations across water,nutrient and light gradients

The univariate and multivariate study of variation for phenotypic plasticity is central to providing a clear understanding of hypotheses about the genetic control and evolution of reaction norms in natural populations. Arabidopsis thaliana is an ideal organism for the study of Genotype × Environment interactions (i.e., genetic variation for plasticity), because of the ease with which it can be grown in large numbers and due to the amount of information already available on its genetics, physiology and developmental biology. In this paper, we report on the plasticity, genetic variation and G × E interactions of four populations of A. thaliana in response to three environmental gradients (water, light and nutrients), each characterized by four levels of the controlled parameter. We measured nine traits and obtained their reaction norms. Path analysis was used to study the plasticity of character correlations. We found a tendency for A. thaliana reaction norms to be linear (either flat, i.e. no plasticity, or with a significant slope), in accordance with previous studies. We detected substantial amounts of genetic variation for plasticity in the light and nutrient gradients, but not in the water gradient. Dramatic restructuring of character correlations was induced by changes in environmental conditions, although some paths tended to be stable irrespective of the environment, thereby suggesting some degree of canalization.     

Effects of data structure on the estimation of covariance functions to describe genotype by environment interactions in a reaction norm model

Covariance functions have been proposed to predict breeding values and genetic (co)variances as a function of phenotypic within herd-year averages (environmental parameters) to include genotype by environment interaction. The objective of this paper was to investigate the influence of definition of environmental parameters and non-random use of sires on expected breeding values and estimated genetic variances across environments. Breeding values were simulated as a linear function of simulated herd effects. The definition of environmental parameters hardly influenced the results. In situations with random use of sires, estimated genetic correlations between the trait expressed in different environments were 0.93, 0.93 and 0.97 while simulated at 0.89 and estimated genetic variances deviated up to 30% from the simulated values. Non random use of sires, poor genetic connectedness and small herd size had a large impact on the estimated covariance functions, expected breeding values and calculated environmental parameters. Estimated genetic correlations between a trait expressed in different environments were biased upwards and breeding values were more biased when genetic connectedness became poorer and herd composition more diverse. The best possible solution at this stage is to use environmental parameters combining large numbers of animals per herd, while losing some information on genotype by environment interaction in the data.     

Phenotypic plasticity in morphological traits in two populations of Drosophila melanogaster

Isofemale lines of two populations of Drosophila melanogaster, originating from France and Tanzania, were examined over a range of temperatures. Morphological traits showed distinct patterns in phenotypic plasticity; flies of the two populations differed in shape. Genotype-by-Environment (G*E) interactions were frequently found in the Tanzania population, but were hardly present in the France population. If G*E interaction was present over temperature, estimates of additive genetic variance and additive genetic covariance were made to compare theoretical models with our data. The conclusion is that in France Drosophila melanogaster has been selected over a wider range of temperatures, resulting in parallel reaction norms of more optimal slope. In contrast, selection must have taken place over a narrower temperature range in Tanzanian flies, and will have exerted no direct influence on the slope of the reaction norm.     

Evolutionary Genetics of Drosophila Mediopunctata

Drosophila mediopunctata belongs to the tripunctata group, which is the second largest Neotropical group of Drosophila with 64 species described. Here I review the work done with this forest dwelling species, and some applications of the methods developed using it as a model organism, to other species. Specifically I look at: the phylogenetic status of the tripunctata group and its relation with other groups in the Hirtodrosophila-immigrans radiation; D. mediopunctata’s chromosome inversion polymorphism (altitudinal cline of frequencies and evidences of selection); the morphological variation of the wing and the development and applications of the ellipse method to describe the morphology of the wing; the variation on the number of aristal branches; the genetic basis of the polychromatism present in D. mediopunctata and its association with chromosome inversions; the sex-ratio trait and its use in the demonstration of Fisher’s principle; and, finally, the finding of the transposable P-element in this species. This paper is respectfully dedicated to Prof. Sergio Olavo Pinto da Costa whose help was decisive in the initial stages of our work.     

Phenotypic plasticity and constancy of life-history traits in laboratory clones of Daphnia magna Straus: effects of neonatal length

1. The phenotypic constancy of four laboratory Daphnia magna clones in fitness-related life-history traits, such as age and clutch size at maturity, was studied among consecutive experimental runs in differing food environments.
2. A significant part of the observed clonal and genetic-by-environmental variation in age and clutch size at maturity was explained by experimentally uncontrollable variations in neonatal body length.
3. Despite food availability, neonatal length determined the number of instars invested to maturity and thus maturation age. Clonal differences in neonatal length and thus in maturation instar occurrence across environments explained most of the clonal variability observed in maturation age.
4. Although interclonal differences in clutch size existed, most of the phenotypic plasticity observed for clutch size was mediated by clonal differences in neonatal length.
5. Clonal differences in neonatal length and in the occurrence of maturation instars across environments dramatically affected the body length of instar IM-2 where provisioning of eggs take place. Since clutch size is determined from clutch mass and clutch mass was strongly related to the body length of instar IM-2, clonal differences across environments in body length of instar IM-2 mirrored clonal differences across environments in clutch size.
6. The results reported in the present study show that maternally mediated traits such as neonatal length affect how genotypes respond to different environmental selection regimes (genetic-by-environmental interaction). Future research needs to focus on the effects of neonatal length on the heritability or genetic variation of the reaction norms, since prediction of the response to selection is a key research objective in quantitative genetic studies.