肺癌组织中岩藻糖化糖链结构免疫组化研究

Lewis X(Le~x)、唾液酸化的Lewis X(Sialyl Lewis X,SLe~x)和唾液酸化的双岩藻糖Lewis X(Sialyl Dimeric Lewis X,SDLe~x)是细胞表面外侧带α1,3岩藻糖的糖链结构。本文用免疫组化ABC法研究了肺癌原发灶、转移灶和癌旁组织中这三种抗原结构的表达。结果发现这三种抗原在肺癌细胞表面及胞浆中均有不同程度的表达,而在肺癌癌旁组织及正常肺组织中未见表达。有转移的肺癌和(或)低分化肺癌中这三种抗原结构的表达要明显高于未发生转移和高、中分化肺癌中相同抗原结构的表达。其中以SLe~x的表达与肺癌细胞的转移能力和分化程度关系最为密切。另外,肺癌浸润转移的淋巴结中也有Le~x、SLe~x的明显表达和SDLe~x的少量表达,而未被肺癌浸润转移的淋巴结中就没有它们的表达。     

柿SCoT-PCR体系优化及品种遗传多样性分析

选用国家柿种质资源圃中24个牛心柿和22个野柿为实验材料,采用L16(45)正交试验设计,建立了最优SCoT-PCR反应体系(20μL反应体系中,含Mg2+2.0mmol/L,dNTPs 0.2mmol/L,Taq聚合酶1.0U,引物0.5μmol/L,DNA模板80ng),并对不同引物的退火温度进行了优化,以探讨SCoT标记在柿亲缘关系鉴定和品种分类方面的应用。结果显示:(1)10条SCoT引物对46份材料共扩增出176个位点,其中多态性位点170个,多态率达96.6%;46份材料的遗传相似系数在0.619~0.852之间。(2)UPGMA聚类分析显示,SCoT标记能将46份材料完全区分开,其中:红花雄野毛柿、红花雌野毛柿单独被聚为一组,独立于牛心柿和野柿之外,与形态特征观察结果一致;璧山牛心柿与野柿聚为一组,在形态特征上璧山牛心柿也更趋于野柿,且璧山牛心柿为四倍体,与其他牛心柿(六倍体)不同,璧山牛心柿应属于野生柿。研究表明,SCoT标记是研究柿种质资源遗传多样性的有效手段;46份材料存在着较高的遗传多样性,在一定程度上反映了品种的地理分布情况,也说明地理因素对柿的亲缘关系有很大影响。     

柿树炭疽菌侵染不同柿树种、品种和部位的细胞学特征

用柿树炭疽病菌Colletotrichumgloeosporioides的分生孢子制备孢子悬浮液,接种无核柿、野柿、冬柿和浙江柿的新梢、叶柄和叶片,并观察致病性、附着胞形成和侵染特性。柿树炭疽菌可以侵染无核柿枝条和叶柄以及野柿枝条,但不侵染无核柿叶片、野柿叶柄和叶片,也不侵染冬柿和浙江柿枝条、叶柄和叶片。室内接种试验与田间自然发病结果一致。柿树炭疽菌在不同柿树表面均能形成附着胞,附着胞产生在寄主表皮背斜细胞壁间结合处(JACWs)或近结合处的百分率达81%~93%。接种12h后,不同柿树表面都有附着胞形成;36h后,无核柿枝条、叶柄中有侵染菌丝存在;48h后,无核柿枝条、叶柄中观察到膨大初生菌丝和较细次生菌丝,初生菌丝可扩展到相邻细胞中,而野柿枝条中仅观察到侵染菌丝;60h后,野柿枝条中也观察到膨大的初生菌丝和较细的次生菌丝,但初生菌丝仅局限在最初侵染的细胞中,无核柿枝条和叶柄以及野柿枝条中都有分枝的次生菌丝在细胞内、细胞间或相邻的细胞中扩展;直到接种90h后,在冬柿和浙江柿上都未观察到侵染菌丝的形成。结果表明,柿树炭疽菌在不同柿树种和品种上侵染菌丝的形成和扩展方式可能是其寄主专化性(或致病性)差异的重要机制之一。     

陈齿爪鳃金龟对不同树种的取食偏好性研究

在室内测定了陈齿爪鳃金龟Holotrichia cheni Chang成虫对油橄榄、板栗和杨梅新鲜树叶的选择和取食反应。油橄榄与板栗和杨梅比较,陈齿爪鳃金龟显著趋向油橄榄树叶,而板栗与杨梅相比,则显著趋向板栗树叶(P<0.01)。陈齿爪鳃金龟成虫取食油橄榄、板栗、杨梅树叶12h后,平均排粪量分别为(203.0±104.8)mg、(100.6±76.6)mg和(8.0±9.6)mg,差异显著(P<0.05),且雄虫对油橄榄的平均取食量约为雌虫的2倍。油橄榄是陈齿爪鳃金龟的主要寄主。     

不同发育时期小鼠胚泡表面Lewis寡糖抗原的表达

在胚泡表面表达的Lewis寡糖抗原 (LewisX ,LewisY)在胚胎发育以及着床过程中起重要作用 .应用免疫印迹和免疫荧光等方法对着床前小鼠胚泡表面的Lewis寡糖抗原进行分析 .结果发现 :小鼠胚泡LewisX寡糖蛋白有 2 7kD、2 9kD、6 8kD和 80kD 4种 ,LewisY寡糖蛋白有 70kD和 90kD 2种 ;2种寡糖抗原均在 8细胞时期开始表达 ,其中 ,LewisY寡糖抗原在胚泡表面的表达持续升高 ,直至胚泡着床 ;而LewisX寡糖抗原的表达则在桑椹期后逐渐降低 ,但仍在胚胎期的囊胚腔侧的顶端可见有部分表达 ;应用RT PCR的分析结果显示 ,LewisX合成的关键糖基转移酶FUT9基因在 4细胞及桑椹期高表达 ,到胚泡期虽然强度明显减弱 ,但仍有表达 ;而LewisY合成关键酶FUT1基因在 4细胞未见表达 ,在桑椹和胚泡阶段均有表达并逐渐升高 ,表达趋势与相应寡糖的表达趋势基本一致 .结果说明 ,在小鼠胚泡表面表达的Lewis寡糖抗原的表达受到相应糖基转移酶基因转录的调控     

岩藻糖链与肝癌细胞发生和转移的相关性研究

研究观察了大鼠诱发肝癌过程中,与UEA、LCA凝集素相结合的含岩藻糖糖蛋白尤其是80 ku蛋白的动态变化．在肝癌病人标本中,也观察到了高转移性肝癌细胞比低转移性肝癌细胞表达更多的UEA、LCA相结合的岩藻糖蛋白．岩藻糖寡糖可以构成一些非常重要的黏附分子的结构,如Lewis抗原．继而进一步观察了不同转移潜能的肝癌细胞中Lewis抗原的表达差异,发现高转移性肝癌细胞 (HMCC97H) 比低转移性肝癌细胞(HMCC97L)表达更高的Lewis x 和 b．在肝癌转移动物模型中,转移灶组织中的Lewis抗原合成关键酶α1,3/1,2以及 α1,6 岩藻糖转移酶活性远比对照组高．当肝癌细胞在维甲酸作用以后,细胞表面的Lewis x 或 b 的水平显著下降,α1,3/1,2岩藻糖转移酶活性也显著下降．同时我们观察到Lewis x可以存在于表皮细胞生长因子受体(EGFR)分子上,在维甲酸作用以后,EGFR上的Lewis x抗原和磷酸化水平都显著性下降．上述结果提示岩藻糖化的糖链如Lewis x在肝癌细胞的发生和转移过程中起重要的作用．     

CO2和1-MCP组合处理对磨盘柿贮藏效果的影响

以磨盘柿采后果实为材料,研究1-MCP的处理以及CO2脱涩与1-MCP组合处理对磨盘柿室温和0~1℃贮藏过程中果实硬度、可溶性单宁含量、总抗坏血酸(TAA)含量以及抗氧化活性的影响。结果显示:(1)贮藏过程中柿果实硬度随时间延长呈下降趋势,室温贮藏CO2处理5 d、CO2处理后进行1-MCP(CO2//1-MCP)处理10 d、1-MCP处理后进行CO2(1-MCP//CO2)处理15 d、CO2与1-MCP同时(CO2+1-MCP)处理30 d均完全软化,0~1℃贮藏75 d后硬度最高的是CO2+1-MCP处理(12.43 kg.cm-2),最低的是CO2//1-MCP处理(2.80 kg.cm-2),甚至低于CO2处理(5.71 kg.cm-2);(2)柿果实可溶性单宁和总抗坏血酸(TAA)含量与脱涩有关,CO2处理、CO2//1-MCP处理、1-MCP//CO2处理和CO2+1-MCP处理大幅低于CK和1-MCP处理,1-MCP处理抑制了可溶性单宁和TAA含量的下降;(3)室温贮藏中除CO2处理之外的处理柿果实总酚含量呈小幅上升趋势,0~1℃贮藏中CK、1-MCP处理、1-MCP//CO2处理和CO2+1-MCP处理的总酚含量稳定在9.91~12.38 mg.g-1FW之间,CO2处理和CO2//1-MCP处理于30 d之后迅速下降,至75 d时分别只有6.83和6.32 mg.g-1FW;(4)各组处理柿果实ABTS自由基清除能力和氧自由基清除能力值(ORAC)的变化趋势与总酚含量大致相当。研究发现,1-MCP能有效阻止磨盘柿果实贮藏期间的硬度、可溶性单宁含量、TAA含量以及抗氧化活性的下降,CO2脱涩与1-MCP处理的不同顺序对硬度和抗氧化活性影响巨大,但对可溶性单宁和TAA含量影响甚微;先CO2脱涩后1-MCP处理对磨盘柿贮藏效应影响不大,1-MCP处理和高浓度CO2脱涩同时进行是磨盘柿脱涩保鲜的最优方案。     

小鼠Lewis肺癌组织中层粘连蛋白受体的分离及其性质的研究

层粘连蛋白(Laminin,LN)是基膜(basement membrane)中的一种主要大分子糖蛋白。一些研究资料表明肿瘤细胞的浸润转移可能与LN有关。肿瘤细胞与LN的作用可能是通过细胞表面LN受体进行的。本文采用亲和层析法从小鼠Lewis肺癌组织中分离LN受体并对其理化性质进行研究。Lewis肺癌LN受体的表观分子量为70,000,还原后SDS电泳图为一条较宽的条带。氨基酸组成中疏水氨基酸占38％,苏氨酸、絲氨酸、门冬氨酸(包括门冬酰胺)占23.5％,通过硝酸纤维素膜片法用HRP-LN测定受体与LN的结合特性,证明具有配基结合专一性,饱和性及高亲和性(Kd=0.95×10~(-9)mol/L)。     

‘恭城月柿'不同生育期果实和叶片单宁组分含量的变化

柿单宁是一种重要的食品功能成分,广泛应用于食品、医疗等领域,研究柿单宁的生物生产特性对其产业应用具有重要意义。该研究以广西特色涩柿品种‘恭城月柿’为材料,测定了幼果期、膨大期、成熟前期、成熟期和成熟后期柿果肉、果皮和叶片的可溶性单宁含量,并利用液质联用色谱对全部样品中6种单宁组分[没食子酸(GA)、没食子儿茶素(GC)、儿茶素(CA)、芦丁(Rutin)、表没食子儿茶素(EGC)和表儿茶素(EC)]进行了定量分析。结果表明:柿果肉和果皮中含有丰富的可溶性单宁,在膨大期含量最高,分别达到21.93 mg·g~(-1)和18.41 mg·g~(-1),随着果实进入成熟阶段显著下降;柿叶片的可溶性单宁含量较低,并且在整个生育期内无明显变化。另外,在柿果肉中检测到GA、GC和CA 3种单宁组分,其中GA含量显著高于其他组分;在柿果皮中检测到GA、GC、CA、Rutin和EGC 5种组分,其中CA含量最高,EGC仅在幼果期和膨大期有痕量检出;在柿叶中检测到全部6种单宁组分,其中整个生育期CA含量极高,EGC和EC均为痕量检出。由此可知,幼果期至膨大期的柿果实可产出较多可溶性单宁,其中果肉中含有较多的GA组分,果皮中含有大量的CA组分,柿叶片在整个生育期均可产出极为丰富的CA单宁组分。该研究为柿单宁的功能性开发利用提供基础数据。     

极小种群植物川柿叶绿体基因组特征与系统发育分析（附录）

川柿(Diospyros sutchuensis)为极小种群和国家重点保护野生植物,分布范围狭窄,种群数量极少。目前,川柿基因组信息缺乏,在柿属(Diospyros)中的系统亲缘关系不明确。该研究通过Illumina平台对川柿叶绿体基因组进行测序,应用Getorganellev1.7.3.4和PGA软件对基因组进行组装和注释,使用DnaSP6.12.03软件进行多序列对比分析,并使用REPuter、Tandem Reapeats Finder和MISA软件进行重复序列分析,使用CodonW1.4和EasyCodemL软件分别进行密码子偏好性和选择压力分析。同时,基于4个不同的叶绿体基因组序列数据集,使用IQtree软件分析川柿与11个柿属物种的系统发育关系。结果表明:(1)川柿叶绿体基因组全长157 917 bp,包含1对26 111 bp的反向重复区、大单拷贝区(87 303 bp)和小单拷贝区(18 392 bp),GC碱基含量为37.4%。(2)川柿叶绿体基因组共注释到113个基因,包括79个蛋白编码基因、30个tRNA基因和4个rRNA基因; 共检测到49个长重复序列、27个串联重复序列和34个简单重复序列; 蛋白编码基因中高频密码子31个,多数密码子末位碱基为A或U,编码亮氨酸的密码子使用最多; 基因组编码区比非编码区更为保守,10个高变热点区域可作为潜在的分子标记; 蛋白编码基因中有8个基因(ndhB、ndhG、ndhI、rbcL、rpoB、petB、petD、rps12)受到正选择压力。(3)系统发育分析显示,川柿与老鸦柿(D. rhombifolia)和乌柿(D. cathayensis)亲缘关系最为密切,它们与海南柿(D. hainanensis)共同形成一个单系分支。该研究结果既为川柿及柿属种质资源鉴定、遗传多样性保护以及种群恢复等提供了叶绿体基因组资源,也为阐明川柿的系统进化提供了重要的分子信息。     

Physicochemical characterization of Escherichia coli. A comparison with gram-positive bacteria.

Eight Escherichia coli strains were characterized by determining their adhesion to xylene, surface free energy, zeta potential, relative surface charge, and their chemical composition. The latter was done by applying X-ray photoelectron spectroscopy (XPS) and infrared spectroscopy (IR). No relationship between the adhesion to xylene and the water contact angles of these strains was found. Three strains had significantly lower surface free energies than the other strains. Surface free energies were either obtained from polar and dispersion parts or from Lifshitz-van der Waals and acid/base parts of the surface free energy. A correlation (r = 0.97) between the polar parts and the electron-donor contributions to the acid/base part of the surface free energy was found. The zeta potentials of all strains, measured as a function of pH (2-11), were negative. Depending on the zeta potential as a function of pH, three groups were recognized among the strains tested. A relationship (r = 0.84) was found between the acid/base component of the surface free energy and the zeta potential measured at pH = 7.4. There was no correlation between results of XPS and IR studies. Data from the literature of XPS and IR studies of the gram-positive staphylococci and streptococci were compared with data from the gram-negative E. coli used in this study. It appeared that in these three groups of bacteria, the polysaccharide content detected by IR corresponded well with the oxygen-to-carbon ratio detected by XPS.     

Physicochemical characterization ofEscherichia coli

EightEscherichia coli strains were characterized by determining their adhesion to xylene, surface free energy, zeta potential, relative surface charge, and their chemical composition. The latter was done by applying X-ray photoelectron spectroscopy (XPS) and infrared spectroscopy (IR). No relationship between the adhesion to xylene and the water contact angles of these strains was found. Three strains had significantly lower surface free energies than the other strains. Surface free energies were either obtained from polar and dispersion parts or from Lifshitz-van der Waals and acid/base parts of the surface free energy. A correlation (r=0.97) between the polar parts and the electron-donor contributions to the acid/base part of the surface free energy was found. The zeta potentials of all strains, measured as a function of pH (2–11), were negative. Depending on the zeta potential as a function of pH, three groups were recognized among the strains tested. A relationship (r=0.84) was found between the acid/base component of the surface free energy and the zeta potential measured at pH=7.4. There was no correlation between results of XPS and IR studies. Data from the literature of XPS and IR studies of the gram-positive staphylococci and streptococci were compared with data from the gram-negativeE. coli used in this study. It appeared that in these three groups of bacteria, the polysaccharide content detected by IR corresponded well with the oxygen-to-carbon ratio detected by XPS.     

Aspecific and specific intermolecular interactions in aqueous media

Aspecific as well as specific interactions involve the same noncovalent forces, consisting of Lifshitz-van der Waals, Lewis acid/base, electrostatic, and thermal or Brownian movement interactions. In vivo, aspecific interactions between, e.g., cells and/or biopolymers usually are repulsive, while specific interactions are always attractive. The differences between the two classes of interactions can be shown to lie in the fact that aspecifically interacting bodies are large, while specifically interacting sites are small, or have a small radius of curvature, and in the fact that aspecifically interacting surfaces are homogeneous, whereas specific sites have a heterogeneous composition.     

Impact of surface thermodynamics on bacterial transport

Microbial surface thermodynamics correlated with bacterial transport in saturated porous media. The surface thermodynamics was characterized by contact-angle measurement and the wicking method, which was related to surface free energies of Lifshitz–van der Waals interaction, Lewis acid–base interaction, and electrostatic interaction between the bacteria and the medium matrix. Transport of three different strains of bacteria present at three physiological states was measured in columns of silica gel and sand from the Canadian River Alluvium (Norman, OK, USA). Microorganisms in stationary state had the highest deposit on solid matrix, compared with logarithmic and decay states. The deposition correlated with the total surface free energy (Δ G₁₃₂^TOT ) and the differences in Δ G₁₃₂^TOT were mainly controlled by the Lewis acid–base interaction. Infrared spectroscopy showed that the increased deposition correlated with an increase in the hydrogen-bonding functional groups on the cell surfaces.     

A comparison of thermodynamic approaches to predict the adhesion of dairy microorganisms to solid substrata.

Four different thermodynamic approaches were compared on their usefulness to predict correctly the adhesion of two fouling microogranisms from dairy processing to various solid substrata. The surface free energies of the interacting surfaces were derived from measured contact angles according to: 1. The equation of state; 2. The geometric-mean equation using dispersion and polar components neglecting spreading pressures; 3. The geometric-mean equation using dispersion and polar components while accounting for spreading pressures; and 4. The Lifshitz-van der Waals/Acid-Base approach. All approaches yielded similar surface free energies for the low energy surfaces. Application of approach 1 with different liquids did not give consistent values for the high surface free energy substrata. The dispersion or Lifshiftz-van der Waals components were nearly equal for approaches 2, 3, and 4; however, the polar or acid-base components differed greatly according to the approach followed. Approaches 1 and 2 correctly predicted that adhesion should occur, although the trend with respect to the various solid substrata was opposite the one experimentally observed, as was also the trend predicted by approach 4. Only approach 3 correctly predicted the observed bacterial adhesion with respect to the various solid substrata. In approach 3 and 4, adhesion was frequently found, despite a positive free energy of adhesion. This was attributed to either possible local attractive electrostatic interactions, inadequate weighing of surface free energy components in the calculation of free energies of adhesion, or to additional forces arising from structured interfacial water.     

The CQ ratio of surface energy components influences adhesion and removal of fouling bacteria

The interaction energy between bacteria and substrata with different surface energies was modelled by the extended DLVO?(Derjaguin, Landau, Verwey and Overbeek) theory. The modeling results revealed that the interaction energy has a strong correlation with the CQ (Chen and Qi) ratio, which is defined as the ratio of the Lifshitz-van der Waals (LW) apolar to the electron donor surface energy components of substrata. Both modeling and experimental results with different bacteria including P. fluorescens, Cobetia marina and Vibrio alginolyticus demonstrated that if the LW surface energy of bacteria is larger than that of water, which is the case for most bacteria, the number of adhered bacteria decreases with a decreasing CQ ratio while bacterial removal rate increases with a decreasing CQ ratio. However, if the LW surface energy of bacteria is less than that of water, the opposite results are obtained. The CQ ratio gives a clear direction for the design of anti-biofouling and biofouling-release coatings through surface modification.     

Molecular mechanical perspective on halogen bonding

The nature and strength of halogen bonding in halo molecule-Lewis base complexes were studied in terms of molecular mechanics using our recently developed positive extra-point (PEP) approach, in which the σ-hole on the halogen atom is represented by an extra point of positive charge. The contributions of the σ-hole (i.e., positively charged extra point) and the halogen atom to the strength of this noncovalent interaction were clarified using the atomic parameter contribution to the molecular interaction (APCtMI) approach. The molecular mechanical results revealed that the halogen bond is electrostatic and van der Waals in nature, and its strength depends on three types of interaction: (1) the attractive electrostatic interaction between the σ-hole and the Lewis base, (2) the repulsive electrostatic interaction between the negative halogen atom and the Lewis base, and (3) the repulsive/attractive van der Waals interactions between the halogen atom and the Lewis base. The strength of the halogen bond increases with increasing σ-hole size (i.e., magnitude of the extra-point charge) and increasing halogen atom size. The van der Waals interaction's contribution to the halogen bond strength is most favorable in chloro complexes, whereas the electrostatic interaction is dominant in iodo complexes. The idea that the chloromethane molecule can form a halogen bond with a Lewis base was revisited in terms of quantum mechanics and molecular mechanics. Although chloromethane does produce a positive region along the C-Cl axis, basis set superposition error corrected second-order M?ller-Plesset calculations showed that chloromethane-Lewis base complexes are unstable, producing halogen-Lewis base contacts longer than the sum of the van der Waals radii of the halogen and O/N atoms. Molecular mechanics using the APCtMI approach showed that electrostatic interactions between chloromethane and a Lewis base are unfavorable owing to the high negative charge on the chlorine atom, which overcomes the corresponding favorable van der Waals interactions.     

A free energy analysis of nucleic acid base stacking in aqueous solution.

This paper reports a theoretical study of the free energy contributions to nucleic acid base stacking in aqueous solution. Electrostatic interactions are treated by using the finite difference Poisson-Boltzmann method and nonpolar effects are treated with explicit calculation of van der Waals interactions and/or free energy-surface area relationships. Although for some pairs of bases there is a favorable Coulombic interaction in the stacked conformation, generally the net effect of electrostatic interactions is to oppose stacking. This result is caused by the loss of favorable base-solvent electrostatic interactions, that accompany the partial removal of polar atoms from water in the stacked conformation. Nonpolar interactions, involving the hydrophobic effect and enhancement of van der Waals interactions caused by close-packing, drive stacking. The calculations qualitatively reproduce the experimental dependence of stacking free energy on purine-pyrimidine composition.     

The non-polar solvent potential of mean force for the dimerization of alanine dipeptide: the role of solute-solvent van der Waals interactions

The non-polar component of the potential of mean force of dimerization of alanine dipeptide has been calculated in explicit solvent by free energy perturbation. We observe that the calculated PMF is inconsistent with a non-polar hydration free energy model based solely on the solute surface area. The non-linear behavior of the solute-solvent van der Waals energy is primarily responsible for the non-linear dependence of the potential of mean force with respect to the surface area. The calculated potential of mean force is reproduced by an implicit solvent model based on a solvent continuum model for the solute-solvent van der Waals interaction energy and the surface area for the work of forming the solute cavity.