Faunal Comparison of Ants among Cheongsando and Other Islands of South Sea in Korea

ABSTRACT This paper attempts to reveal the biogeographic characteristics of ant fauna of the islands among Korean South Sea, using quantitative analyses. The data treated in this paper are those from Cheongsando Is. and 10 other islands in South Sea which have been well investigated. The faunal similarity is examined using the Nomura-Simpson's Coefficient (NSC). Futhermore, the obtained NSC value matrix is examined by a cluster analysis using UPGMA method. The number of species which has been recorded in the 11 islands are 91 species belonging to 34 genera under 4 subfamilies. Among the above 11 islands, Jejudo Is., which is the largest, has the highest number of species, 67 spp., while Geogeumdo Is. has the lowest, 21 spp. Cheongsando Is. which has directly been investigated by authors has 30 species. The NSC- values between the 11 localities investigated range from 0.522 (Wando Is. to Saryangdo Is.) to 1.000 (Namhaedo Is. to Geojedo Is.). The comparative NSC value of Cheongsando Is. and 10 islands range from 0.522 (to Saryangdo Is.) to 0.833 (to Jejudo Is). The cluster analysis using a similarity index (NSC) showed that the islands of these areas could be grouped into 3, a level of 32%. The similarity of Soando Is. and Geomundo Is. were the closest, 63%, while Soando Is. and Namhaedo Is. were the remotest, 32%. The similarity of Jindo Is. and Cheongsando Is, was 63%, while that of Namhaedo Is. and Cheongsando Is. was 32%.     

Comparative Insect Faunas between Ganghwado and Six others Islands of West Coastal in Incheon,Korea

This paper is intended as an investigation of the biogeographic characteristics of insect faunas of the seven islands in West Coastal of Incheon, Korea, using quantitative analysis. The faunal similarity is examined using the Bray & Curtis similarity. The obtained similarity value matrix was examined by a cluster analysis using UPGMA method. The number and the distribution records of each species in the areas are 1,001 species of insects belonging to 12 orders from the seven investigated islands. Among above seven islands, Seokmodo has the highest number of species, 497 species, while Yeonpyeongdo has the lowest, 136 species. The species composition of insects reported in Ganghwado was 309 species under seven orders. The similarity values between seven localities investigated range from 24.907(Gyodongdo to Yeonpyeongdo) to 49.899(Baengnyeongdo to Ganghwado). That is, the species composition of Baengnyeongdo(47.90%) was similar to that of Ganghwado, while that of Yeonpyeongdo(25.28%) was different from that. The cluster analysis using a similarity index shows that all the islands of these areas can be divided into 3 groups at the level of 30.97%.     

Distribution anomalies in avian haemosporidian parasites in the southern Lesser Antilles

We compared the haemosporidian parasite faunas (Plasmodium and Haemoproteus) of small land birds on the islands of St Lucia, St Vincent and Grenada in the southern Lesser Antilles. The islands differ in distance from the South American source of colonists, proximity to each other, and similarity of their avifaunas. On each island, we obtained 419–572 blood samples from 22–25 of the 34–41 resident species. We detected parasite infection by PCR and identified parasite lineages by sequencing a portion of the mitochondrial cytochrome b gene. Parasite prevalence varied from 31% on St Lucia to 22% on St Vincent and 18% on Grenada. Abundant parasite lineages differed between the three islands in spite of the similarity in host species. As in other studies, the geographic distributions of the individual parasite lineages varied widely between local endemism and broad distribution within the West Indies, including cases of long‐distance disjunction. St Vincent was unusual in the near absence of Plasmodium parasites, which accorded with low numbers of suitable mosquito vectors reported from the island. Parasites on St Vincent also tended to be host specialists compared to those on St Lucia and Grenada. Similarity in parasite assemblages among the three islands varied in parallel with host assemblage similarity (but not similarity of infected hosts) and with geographic proximity. Parasite prevalence increased with host abundance on both St Lucia and St Vincent, but not on Grenada; prevalence did not vary between endemic and more widespread host species. In addition, the endemic host species harbored parasites that were recovered from a variety of non‐endemic species as well. These results support the individualistic nature of haemosporidian parasite assemblages in evolutionarily independent host populations.     

Genetic relationships among wheat genotypes, as revealed by microsatellite markers and pedigree analysis

Genetic relationships among 20 elite wheat genotypes were studied using microsatellite markers and pedigree analysis. A total of 93 polymorphic bands were obtained with 25 microsatellite primer pairs. Coefficient of parentage (COP) values were calculated using parentage information at the expansion level of 5. The pedigree-based similarity (mean 0.115, range 0.00-0.53) was lower than the similarity assessed using microsatellite markers (mean 0.70, range 0.47-0.91). Similarity estimates were used to construct dendrograms by using the unweighted pair-group method with arithmetic averages (UPGMA). Clustering of genotypes in respect of marker-based similarity revealed two groups. Genotype PBW442 diverged and appeared as distinct from all other genotypes in both marker-based and pedigree-based analysis. The correlation of COP values with genetic similarity values based on microsatellite markers is low (r = 0.285, p < 0.05). The results indicate a need to develop wheat varieties with a diverse genetic background and to incorporate new variability into the existing wheat gene pool.     

Strategic Conservation of Orchard Germplasm Based on Indigenous Knowledge and Genetic Diversity: a Case Study of Sour Orange Populations in China

To effectively conserve sour orange (Citrus aurantium L.) germplasm on two Islands at the estuary of the Yangtze River In China, we estimated genetic variation and relationships of the known parental trees and their proposed descendents (young trees) using the fingerprinta of random amplified polymorphic DHA (RAPD). Results based on RAPD analyses showed considerable genetic diversity In the parental populations (H<,e> = 0.202). The overall populations including the parental and young trees showed slightly higher genetic diversity (H<,e> = 0.298) than the parents, with about 10% variation between populations. An unweighted pair group method with arithmetic mean analysis dendrogram based on cluster analysis of the Jaccard similarity among individuals demonstrated a more complicated relationship of the parental and young trees from the two islands, although the young trees showed a clear association with parental trees. This indicates a slgnificant contribution of parental trees in establishing the sour orange populations on the two islands. According to farmers' knowledge, conservation of only one or two parental trees would be sufficient because they believed that the whole populations were generated from a single mother tree. However, this study suggests that preserving most parental trees and some selected young trees with distant genetic relationships should be an effective conservation strategy for sour orange germplasm on the two islands.     

Processes at multiple scales affect richness and similarity of non‐native plant species in mountains around the world

Aim To investigate how species richness and similarity of non‐native plants varies along gradients of elevation and human disturbance. Location Eight mountain regions on four continents and two oceanic islands. Methods We compared the distribution of non‐native plant species along roads in eight mountainous regions. Within each region, abundance of plant species was recorded at 41–84 sites along elevational gradients using 100‐m² plots located 0, 25 and 75 m from roadsides. We used mixed‐effects models to examine how local variation in species richness and similarity were affected by processes at three scales: among regions (global), along elevational gradients (regional) and with distance from the road (local). We used model selection and information criteria to choose best‐fit models of species richness along elevational gradients. We performed a hierarchical clustering of similarity to investigate human‐related factors and environmental filtering as potential drivers at the global scale. Results Species richness and similarity of non‐native plant species along elevational gradients were strongly influenced by factors operating at scales ranging from 100 m to 1000s of km. Non‐native species richness was highest in the New World regions, reflecting the effects of colonization from Europe. Similarity among regions was low and due mainly to certain Eurasian species, mostly native to temperate Europe, occurring in all New World regions. Elevation and distance from the road explained little of the variation in similarity. The elevational distribution of non‐native species richness varied, but was always greatest in the lower third of the range. In all regions, non‐native species richness declined away from roadsides. In three regions, this decline was steeper at higher elevations, and there was an interaction between distance and elevation. Main conclusions Because non‐native plant species are affected by processes operating at global, regional and local scales, a multi‐scale perspective is needed to understand their patterns of distribution. The processes involved include global dispersal, filtering along elevational gradients and differential establishment with distance from roadsides.     

Seroprevalence of hantaviruses in small wild mammals trapped in South Korea from 2005 to 2010

The seroprevalence of Hantaan virus (HTNV) in wild rodents in South Korea was analyzed. Wild rodents were trapped in 18 cities in eight provinces during 2005-2007 and on three islands and four mountains during 2008-2010. Sera were collected from 629 out of 933 trapped wild animals and examined for immunoglobulin G antibodies to HTNV using indirect immunofluorescence assays. Apodemus agrarius (80.1%) was the most frequently captured species at almost all trapping sites. The overall prevalence of HTNV antibodies was 0.26 (162/629). Seropositive individuals were more frequent in cities (32.2%, n=410) than on islands (14.0%, n=57) or mountains (13.6%, n= 162). HTNV antibody-positive rate was higher in the fall (29.6%, n=253) than in the spring (23.1%, n=376). A. agrarius had the highest prevalence of HTNV antibodies (26.9%, n=561) of all tested species. Considering all the individuals, the prevalence of HTNV antibodies was higher in males (29.2%, n=250) than in females (22.3%, n=305). Our results show that HTNV is widely distributed throughout South Korea, and that HTNV infection of wild rodents is affected by their habitat, species, sex, and season.     

Insular Freshwater Fish Faunas of Micronesia: Patterns of Species Richness and Similarity

Freshwater fishes are an important but relatively little known component of the highly diverse fish fauna of Micronesia. Localities supporting communities of freshwater fishes include large high islands, with considerable habitat complexity, and smaller low islands, such as atolls and raised coral islands, with limited freshwater habitat. Both types of islands may support species with adult life history styles that are (a) amphidromous and catadromous, (b) euryhaline (often estuarine), or (c) marine species which enter freshwater from time to time. We compared patterns of species richness and similarity between Micronesian localities for amphidromous and catadromous, euryhaline and marine species (ACEM) pooled, and for amphidromous and catadromous species (ACFW). Species richness of both ACEM and ACFW fishes was greatest on larger high islands compared to smaller high and all low islands. Cluster analysis of similarity indices for ACEM species between localities revealed two faunal components: high islands and low islands. High islands were further partitioned into a Caroline Islands cluster and a separate Mariana Islands cluster. Cluster analysis of ACFW species was more complex. One cluster consisted of a low island and a small high island, both in the Carolines chain and with limited freshwater habitat. The second cluster was partitioned into high islands and low islands that reflected influences of both size and geographical location.     

Population-genetic structure of Dolly varden (Salvelinus malma Walbaum) from Southeastern Sakhalin and Southern Kuril islands

The genetic structure of Dolly Varden (Salvelinus malma Walbaum) populations from six rivers of southeastern Sakhalin and six rivers of the Kuril Islands was examined using electrophoretic, analysis of 22 enzyme systems encoded by 45 loci. In all populations, mean heterozygosities (0.044-0.105), mean numbers of alleles per locus (1.15-1.52), and proportions of polymorphic loci (18.2-39.4%) were estimated for all loci that had clear resolution. Highly significant heterogeneity of allele frequencies was detected among populations of both Sakhalin and the Kuril islands. By means of cluster analysis and multidimentional scaling, all populations were divided into the Sakhalin and Kuril groups. Within the groups, no association of genetic similarity with geographic distance between populations was observed. Although the average genetic diversity was similar in these regions, the relative interpopulation diversity was almost three times higher in the Kuril (17.6%) than in the Sakhalin (6.5%) groups. In all, the proportion of genetic diversity between regions (8.4%) was somewhat lower than the proportion of mean interpopulation diversity (11.3%). In small populations isolated from the sea, genetic variation was lower than in nonisolated populations. Allozyme differences between the northern and the southern forms of Dolly Varden are discussed.     

GENETIC VARIABILITY WITHIN A POPULATION AND BETWEEN DIPLOID/HAPLOID TISSUE OF MACROCYSTIS PYRIFERA (PHAEOPHYCEAE)1

Multi-locus DNA fingerprints using an M13 probe were obtained for eight individuals of giant kelp Macrocystis pyrifera (L.) C. Ag. collected from Monterey Bay, California. For each individual, DNA was extracted from a diploid blade and from ca. 10⁹ haploid spores that were released from four to Jive sporophylls. Viable or swimming spores from one individual were pooled and referred to as a spore group. A total of 34 bands (4–19 kb) was detected in DNA fingerprints from the eight blades and eight spore groups, with individual blade or spore groups exhibiting 7–18 bands (mean = 12.6). One band (4.5 kb) was present in all 16 samples. Eight bands were detected in 11–14 of the 16 samples. Similarity indices were calculated for all pairwise comparisons of fingerprint bands among all possible combinations of blades and spore groups. Mean similarity indices for the eight blades (0.51, SE = 0.032) and spore groups (0.56, SE = 0.031) were significantly lower than for the eight comparisons of the blade and spore groups from a single individual (0.86, SE = 0.052). The data indicate that DNA fingerprints can be used to measure genetic variation within populations of M. pyrifera because variation of DNA fingerprints associated with meiotic products (spores) of a given individual is small relative to variation observed among individuals within the population. Additionally, fingerprint variation between diploid vegetative tissue and haploid meiotic products may be a measure of genetic change due to recombination or DNA turnover mechanisms.     

Global survey of diversity among environmental saltwater Bacteriovoracaceae

Halophilic Bacteriovorax (Bx), formerly known as the marine Bdellovibrio, are Gram-negative, predatory bacteria found in saltwater systems. To assess their genetic diversity and geographical occurrence, the small subunit rRNA (ssu-rRNA) gene sequences were analysed from 111 marine, salt lake and estuarine isolates recovered from 27 locations around the world. Phylogenetic analysis of these isolates using Geobacter as the outgroup revealed eight distinct ribotype clusters each with at least two isolates. Each cluster was composed of isolates with >or= 96.5% similarity in ssu-rRNA sequences. Three single isolate outliers were observed. Many of the Bx ribotypes were widely dispersed among different types of ecosystems (e.g. cluster III was recovered from the Great Salt Lake, the Atlantic Ocean, Pacific Ocean, Chesapeake Bay and gills of aquarium fish). However, cluster V was only recovered from a single ecosystem, estuaries. Cluster V was originally detected in the Chesapeake Bay and subsequently in the Pamlico Sound/Neuse River system. Principal coordinate analysis revealed that the sequences of the isolates from different environments were distinct from each other. The results of this study reveal the saltwater Bx to be phylogenetically and environmentally more diverse than was previously known.     

RAPD analysis of the genetic diversity of mango (Mangifera indica) germplasm in Brazil

We evaluated genetic variability of mango (Mangifera indica) accessions maintained in the Active Germplasm Bank of Embrapa Meio-Norte in Teresina, Piauí, Brazil, using RAPDs. Among these accessions, 35 originated from plantings in Brazil, six from the USA and one from India. Genomic DNA, extracted from leaf material using a commercial purification kit, was subjected to PCR with the primers A01, A09, G03, G10, N05, and M16. Fifty-five polymorphic loci were identified, with mean of 9.16 ± 3.31 bands per primer and 100% polymorphism. Application of unweighted pair group method using arithmetic average cluster analysis demonstrated five genotypic groups among the accessions examined. The genotypes Rosa 41, Rosa 48 and Rosa 49 were highly similar (94% similarity), whereas genotypes Sensation and Rosa 18 were the most divergent (only 7% similarity). The mango accessions were found to have considerable genetic variability, demonstrating the importance of analyzing each genotype in a collection in order to efficiently maintain the germplasm collection.     

Characterization of Fe-hydrogenase genes diversity and hydrogen-producing population in an acidophilic sludge

According to the DNA sequences of six Fe-hydrogenase genes (FHG) of Clostridium species retrieved from the GenBank, a set of primers specific for Fe-hydrogenase genes were identified from their common conserved regions. The length of DNA fragments amplified using these two primers averaged 313 bps. This primer set was then used to investigate the FHG diversity in an acidophilic rice-degrading sludge by methods based on polymerase chain reaction (PCR). Eight new Fe-hydrogenase gene fragments were identified from the sludge, as a result. Similarity based on amino acids among the 14 hydrogenase genes (8 newly found plus 6 known ones) was 39-97%, which is comparable to the similarity of 41-82% among the 6 known hydrogenase genes alone. The low similarity indicates a great diversity on Fe-hydrogenase among the Clostridium species. The primer set was then used to monitor the change of hydrogen-producing microbial population in a batch reaction using the technique of quantitative real-time polymerase chain reaction (qRT-PCR) with SYBR Green I as the fluorescent reagent. Results showed that the hydrogen producers had an average generation time of 4.2h, and a production rate of 7.0 x 10(16) H2-molecule cell(-1)h(-1).     

山西省8种蝗虫8个种群的遗传学研究

采用水平淀粉凝胶电泳技术,对采自山西省蝗虫区系的优势种类;斑腿蝗科（Catantopidae）,斑翅蝗科（Oe-dipodidae）和网翅蝗科（Arcypteridae）3科7属8种蝗虫的11种酶进行了检测,共辨析出17个酶基因座位,并计算出等位基因频率和遗传距离,等位基因频率分析表明：Ao-I、Est-3,G3pd-1、Idh-2和Mdh-2基因座位的等位基因少,等位基因数目在种间变化较小,故推断其进化速率较慢,利用这些基因座位的保守特征,可作为分子标记研究较高级阶元的系统发育关系,而Gpi-1,Ldh-1和Me-1基因座位的等位基因多,等位基因数目在种内和种间差异较大,可以用作种,属间及种群间遗传结构的比较研究。对每个基因座位的各基因型进行χ^2检验,除Acp-1,Adk-1,Ao-1和Ao-2在部分蝗虫中符合Hardy-Weinberg平衡外,其余绝大多数基因座位的基因型频率显著偏离H-W平衡。在所研究的8种蝗虫中,多态位点百分率普遍较高（P=64.7%～94.1%）,但由于杂合子数目较少而使每个基因座位的平均杂合度降低（Ho=0.024～0.087）,对多态位点百分率分析发现：迁飞能力是影响蝗虫种间遗传变异的因素之一,具有迁飞能力的蝗虫（P=88.2%～94.1%）较非迁飞性蝗虫（P=64.7%～94.1%）表现出较高的遗传多态性,但也有例外,如中华稻蝗（Oxya chinensis）的P值高达94.1%,上述结果表明：由于迁飞行为可使个体暴露于各种不同环境,故而种群保持较高的遗传多态性能增强该物种在不同栖息地的生存和繁殖能力,因此,迁飞有利于维持迁飞性蝗虫遗传多态性的动态平衡。根据Nei的遗传一致度（I）和Roger的遗传距离（D）进行分析,结果与基于形态特征确定的分类阶元系统关系基本相符;即同属的小翅雏蝗（Chorthippus fallax）和白纹雏蝗（Chorthippus albonemus）具有最高的遗传一致度（I=0.813）和最小的遗传距离（D=0.336）,同位不同属间遗传一致度（I=0.798～0.559）和遗传距离（D=0.398～0.474）居中,科之间I值最小（I=0.523～0.479）,D值最大（D=0.505～0.523）,利用UPGMA对I值和D值进行聚类,所得两种聚类图在同属种间和同科属间的关系一致,但在科间关系有所差别,Roger的遗传距离（D）聚类树图表明：斑腿蝗科物种和斑翅蝗科物种间表现出较小的遗传距离（D=0.505）,而网翅蝗科与以上两科的遗传距离也极为接近（D=0.523）,综上所述,等位酶分析能较好地反映蝗虫同属种间和同科属间的亲缘关系,若能断更高阶元的系统发生,则需结合其他性状进行综合分析。     

内蒙古典型草原羊草种群遗传分化的RAPD分析

运用 RAPD技术对内蒙古典型草原不同生境 8个羊草种群进行分析。采用 2 4个随机引物 (10 nt)在 8个种群中共检测到2 2 4个扩增片断 ,其中多态性片断 173个 ,总的多态位点百分率达 77.2 % ,特异性片断 2 2个 ,占 9.82 % ,平均每个引物扩增的DNA带数为 9.3 3条。利用 Nei指数和 Shannon指数估算了 8个种群的遗传多样性 ,并计算种群相似系数和遗传距离 ,运用UPGMA法进行聚类分析。结果表明 :羊草大部分的遗传变异存在于种群内 ,只有少部分的遗传变异存在于种群间 ,Nei指数和Shannon指数计算结果分别为 85.4%和 66.8% ;羊草不同种群的遗传多样性存在差异 ;8个羊草种群平均遗传距离为 0 .2 3 16,变异范围为 0 .1587～ 0 .2 70 0 ,说明 8个羊草种群间的遗传变异不大 ,即 :在较小地理范围内羊草的遗传分化程度较小 ;8个种群可聚为 3个类群 ,聚类结果显示生境相似的种群能够聚在一起 ,而地理距离最近的种群不一定归为一类 ,说明小范围内羊草种群间的遗传分化与地理距离不存在相关性 ,而与其生境间的相似度相关。影响遗传相似性的不是单一因子而是各种因子的综合作用 ,较小地理范围内羊草种群间的遗传分化主要是由环境的异质性所引起的     

中国沿海主要岛屿植物区系的性质及其相互关系与分布格局

通过植物区系谱、多样性指数、主坐标排序及聚类分析等方法,研究了中国沿海主要岛屿(从渤海、黄海、东海及南海海域,选取不同纬度所在地的岛屿)的植物区系性质、相互关系及分布格局,为沿海岛屿的生态保护和生物多样性保育提供依据。结果表明:(1)中国沿海主要岛屿植物区系地理成分表现出纬向分异性,温带成分比例随着纬度降低呈递减趋势,而各种热带成分比例呈递增的分布格局,这与不同海岛所处位置气候的纬向地带性基本一致;(2)不同沿海岛屿植物区系的Shannon指数(1.887~2.197)和Simpson指数(0.780~0.865)均无显著差异,而区系间Pearson相关系数(0.199~0.997)则有明显的差异;(3)通过聚类分析和主坐标排序生成的树状图和最小生成树,可将22个岛屿划分为5个集合,揭示了沿海岛屿植物区系属的类似性和南北纬度分布格局。     

Improving eDNA-based protist diversity assessments using networks of amplicon sequence variants

Effective and precise grouping of highly similar sequences remains a major bottleneck in the evaluation of high-throughput sequencing datasets. Amplicon sequence variants (ASVs) offer a promising alternative that may supersede the widely used operational taxonomic units (OTUs) in environmental sequencing studies. We compared the performance of a recently developed pipeline based on the algorithm DADA2 for obtaining ASVs against a pipeline based on the algorithm SWARM for obtaining OTUs. Illumina-sequencing of 29 individual ciliate species resulted in up to 11 ASVs per species, while SWARM produced up to 19 OTUs per species. To improve the congruency between species diversity and molecular diversity, we applied sequence similarity networks (SSNs) for second-level sequence grouping into network sequence clusters (NSCs). At 100% sequence similarity in SWARM-SSNs, NSC numbers decreased from 7.9-fold overestimation without abundance filter, to 4.5-fold overestimation when an abundance filter was applied. For the DADA2-SSN approach, NSC numbers decreased from 3.5-fold to 3-fold overestimation. Rand index cluster analyses predicted best binning results between 97% and 94% sequence similarity for both DADA2-SSNs and SWARM-SSNs. Depending on the ecological questions addressed in an environmental sequencing study with protists we recommend ASVs as replacement for OTUs, best in combination with SSNs.     

Patterns of marine bacterioplankton biodiversity in the surface waters of the Scotia Arc, Southern Ocean

Spatial patchiness in marine surface bacterioplankton populations was investigated in the Southern Ocean, where the Antarctic Circumpolar Current meets the islands of the Scotia Arc and is subjected to terrestrial input, upwelling of nutrients and seasonal phytoplankton blooms. Total bacterioplankton population density, group-specific taxonomic distribution and six of eight dominant members of the bacterioplankton community were found to be consistent across 18 nearshore sites at eight locations around the Scotia Arc. Results from seven independent 16S rRNA gene clone libraries (1223 sequences in total) and fluorescent in situ hybridization suggested that microbial assemblages were predominantly homogeneous between Scotia Arc sites, where the Alphaproteobacteria, Gammaproteobacteria and the Cytophaga-Flavobacterium-Bacteroidetes cluster were the dominant bacterial groups. Of the 1223 useable sequences generated, 1087 (89%) shared ≥?97% similarity with marine microorganisms and 331 (27%) matched published sequences previously detected in permanently cold Arctic and Antarctic marine environments. Taken together, results suggest that the dominant bacterioplankton groups are consistent between locations, but significant differences may be detected across the rare biodiversity.     

The use of microsatellite markers for the detection of genetic similarity among winter bread wheat lines for chromosome 3A

Previous studies with chromosome substitution and recombinant inbred chromosome lines identified that chromosome 3A of wheat cv. Wichita contains alleles that influence grain yield, yield components and agronomic performance traits relative to alleles on chromosome 3A of Cheyenne, a cultivar believed to be the founder parent of many Nebraska developed cultivars. This study was carried out to examine the genetic similarity among wheat cultivars based on the variation in chromosome 3A. Forty-eight cultivars, two promising lines and four substitution lines (in duplicate) were included in the study. Thirty-six chromosome 3A-specific and 12 group-3 barley simple sequence repeat (SSR) primer pairs were used. A total of 106 polymorphic bands were scored. Transferability of barley microsatellite markers to wheat was 73%. The coefficient of genetic distance (D) among the genotypes ranged from 0.40 to 0.91 and averaged D=0.66. Cluster analysis by the unweighted pair-group method with arithmetic averages showed one large and one small cluster with eight minor clusters in the large cluster. Several known pedigree relationships largely corresponded with the results of SSR clusters and principal coordinate analysis. Cluster analysis was also carried out by using 22 alleles that separate Wichita 3A from Cheyenne 3A, and three clusters were identified (a small cluster related to Cheyenne of mainly western Nebraska wheat cultivars; a larger, intermediate cluster with many modern Nebraska wheat cultivars; a large cluster related to Wichita with many modern high-yielding or Kansas wheat cultivars). Using three SSR markers that identify known agronomically important quantitative trait loci (QTL) regions, we again separated the cultivars into three main clusters that were related to Cheyenne or Wichita, or had a different 3A lineage. These results suggest that SSR markers linked to agronomically important QTLs are a valuable asset for estimating both genetic similarity for chromosome 3A and how the chromosome has been used in cultivar improvement.