The RNA World and Its Evolution

This paper develops Belozersky’s early idea of the precedence of RNA in the origin of life on the Earth. Based on the current knowledge of the functional omnipotence of RNA, three new mechanisms are considered that could be critical for the origin and evolution of the ancient RNA world: (1) the reaction of spontaneous transesterification of polyribonucleotides in aqueous media, which has been recently discovered by A.B. Chetverin and colleagues and could result in elongation of short initial oligoribonucleotides and generate sequence variants for further selection; (2) compartmentation of functional RNA ensembles in the form of mixed molecular colonies on moist mineral surfaces, in the absence of membranes and other envelopes; and (3) systematic exponential enrichment of an RNA population with “ functionally the best” molecules due to alternating dissolution of the colonies upon flooding and formation of new colonies upon drying in ancient pools (“primordial natural SELEX”).__________Translated from Molekulyarnaya Biologiya, Vol. 39, No. 4, 2005, pp. 550–556.Original Russian Text Copyright © 2005 by Spirin.     

The Effect of Conflicting Pressures on the Evolution of Division of Labor

Within nature, many groups exhibit division of labor. Individuals in these groups are under seemingly antagonistic pressures to perform the task most directly beneficial to themselves and to potentially perform a less desirable task to ensure the success of the group. Performing experiments to study how these pressures interact in an evolutionary context is challenging with organic systems because of long generation times and difficulties related to group propagation and fine-grained control of within-group and between-group pressures. Here, we use groups of digital organisms (i.e., self-replicating computer programs) to explore how populations respond to antagonistic multilevel selection pressures. Specifically, we impose a within-group pressure to perform a highly-rewarded role and a between-group pressure to perform a diverse suite of roles. Thus, individuals specializing on highly-rewarded roles will have a within-group advantage, but groups of such specialists have a between-group disadvantage. We find that digital groups could evolve to be either single-lineage or multi-lineage, depending on experimental parameters. These group compositions are reminiscent of different kinds of major evolutionary transitions that occur within nature, where either relatives divide labor (fraternal transitions) or multiple different organisms coordinate activities to form a higher-level individual (egalitarian transitions). Regardless of group composition, organisms embraced phenotypic plasticity as a means for genetically similar individuals to perform different roles. Additionally, in multi-lineage groups, organisms from lineages performing highly-rewarded roles also employed reproductive restraint to ensure successful coexistence with organisms from other lineages.     

Rapid Transition towards the Division of Labor via Evolution of Developmental Plasticity

A crucial step in several major evolutionary transitions is the division of labor between components of the emerging higher-level evolutionary unit. Examples include the separation of germ and soma in simple multicellular organisms, appearance of multiple cell types and organs in more complex organisms, and emergence of casts in eusocial insects. How the division of labor was achieved in the face of selfishness of lower-level units is controversial. I present a simple mathematical model describing the evolutionary emergence of the division of labor via developmental plasticity starting with a colony of undifferentiated cells and ending with completely differentiated multicellular organisms. I explore how the plausibility and the dynamics of the division of labor depend on its fitness advantage, mutation rate, costs of developmental plasticity, and the colony size. The model shows that the transition to differentiated multicellularity, which has happened many times in the history of life, can be achieved relatively easily. My approach is expandable in a number of directions including the emergence of multiple cell types, complex organs, or casts of eusocial insects.     

Sexual Division of Labor in Agriculture

Female agricultural contributions decline with agricultural intensification. We formulate and test a theory of the processes of agricultural intensification that explains a high proportion of the variance in female contributions to agriculture. Five variables show replicable effects across two or more regions of the world. These are number of dry months, importance of domesticated animals to subsistence, use of the plow, crop type, and population density. Of these, the first two are the most powerful predictors of female agricultural contributions, while population density has only very weak effects.
MICHAEL L. BURTON is Professor of Anthropology. School of Social Sciences. University of California. Irvine. CA 92717.
DOUGLAS R. WHITE is Professor of Anthropology. School of Social Sciences. University of California. Irvine.     

木质素降解酶及相关基因研究进展

生物质的高效综合利用已成为全球关注的热点问题。生物质的主要成分是木质素、纤维素和半纤维素,其利用的关键是如何去除木质素,从而提高纤维素和半纤维素的得率。其中利用真菌的生物预处理方法因条件温和、无二次污染等优点符合全球经济可持续发展需要,受到研究者的普遍关注。综述了近年国内外真菌分泌的主要木质素降解酶,包括木质素过氧化物酶(Li P)、锰过氧化物酶(Mn P)、漆酶(laccase)和多功能过氧化物酶(VP)的主要特点,总结了木质素降解相关酶的基因工程、基因组学的研究成果,并对其发展前景进行了展望。     

Glyphosate-Tolerant Crops: Genes and Enzymes

This review focuses on the genes for the enzymes 5-enolpyruvyl-3-phosphoshikimlc acid synthase (EPSPS) and the glyphosate oxidoreductase (GOX). These genes have been used to genetically engineer plants that are resistant to the herbicide glyphosate. Overproduction of glyphosate-insensitive.EPSPS in transgenic crops has been used to overcome the deleterious effuts of this herbicide. The introduction into plants of GOX also confers glyphosate tolerance to plants and augments the tolerance of transgenic plants already expressing a glyphosate tolerant EPSPS. These genes also provide a method for selecting transformed plant tissue using the glyphosate tolerance as the selectable marker in the presence of inhibitory concentrations of glypllosate. Glyphosate tolerant transgenic plants of beet, corn, cotton, lettuce, poplar, potato, rapeseed. soybean, tobacco, tomato, and wheat have already been field tested and are entering agriculture.     

Fishing and the Sexual Division of Labor among the Meriam

Do men and women forage differently because they are cooperatively responding to children's requirements for care or because they are differentially sensitive to variance? In this article, I examine how care trade-offs and variance contribute to gender differences in fishing strategies among Torres Strait Islanders (Meriam). Women's fishing had lower failure rates, coefficients of variation, and frequencies of sharing than men's fishing. Men and women responded to trade-offs between mean and variance differently: Women spent less time on high mean–high variance activities, men less time on high mean–low variance activities. Although child-care trade-offs affected time allocation to different fishing activities among women, they did not affect differences in time allocation between the sexes. These results support previous work implicating variance and sharing frequency as important resource currencies shaping gender differences in subsistence decisions, and they offer challenges to a general model of the division of labor predicated on economic notions of specialization as increasing production efficiency.     

Religion and Social Structure in The Division of Labor

The article offers a thoroughgoing reinterpretation of The Division of Labor, focusing on the six-stage theory of sociocultural change that lies in the background of Durkheim's well-known contrast between the ideal types of mechanical and organic solidarity. Durkheim's characterization of each stage is described in terms of its structural-functional differentiation and religious unity. The Division's evolutionary theory, which underlies much of Durkheim's mature work, is criticized for its dated ethnographic evidence, and contrasted with alternative evolutionary proposals, including that of sociobiology.     

The RNA i-Motif in the Primordial RNA World

The primordial RNA world is a hypothetical era prior to the appearance of protein and DNA, when RNA molecules were the sole building blocks for early forms of life on Earth. A critical concern with the RNA-world hypothesis is the instability of the cytosine nucleobase compared to the other three bases (adenine, guanine, and uracil). The author proposes that cytosine residues could have stably existed in the primordial world in the RNA i-motif, a four-stranded quadruplex structure formed by base-pairing of protonated and unprotonated cytosine residues under acidic conditions. The i-motif structure not only increases the lifetime of cytosine residues by slowing their deamination rate, but could also allow RNA polymers to bind to certain ligands (e.g., anions) to perform critical functions. Future studies focused on determining the rate of cytosine deamination in RNA i-motifs over a range of pH, temperature, and pressure conditions, and on interrogating the interactions between ligands and RNA i-motifs, could uncover new evidence of the origin of life on Earth.

     

The Identity Division of Labor in Native Alaska

ABSTRACT  There is often an implicit assumption that womens' technologies and associated tasks in subsistence-based groups are expedient and simple. For instance, in Native Alaska, the butchering of fish has been illustrated as arduous but uncomplicated work. On the contrary, closer examinations, as well as discussions with the people who are still learning and practicing subsistence tasks, indicate that this perspective is inaccurate. Instead, these taken-for-granted technologies and techniques require a lifetime of training and practice, and not all people achieve master status. Drawing from data from contemporary herring processing and the related tools of the trade, I explore the division of labor in the context of expertise and apprenticeship. [Keywords: apprenticeship, expertise, gender, age, Alaska]     

Mobile Genes and RNA Interference

Current views on the role of RNA interference in controlling the expression and transposition of mobile genes in the eukaryotic genome are considered in connection with a recollected work resulting in the discovery of retrotransposons.     

Gene Conversion Drives Within Genic Sequences: Concerted Evolution of Ribosomal RNA Genes in Bacteria and Archaea

Multiple copies of a given ribosomal RNA gene family undergo concerted evolution such that sequences of all gene copies are virtually identical within a species although they diverge normally between species. In eukaryotes, gene conversion and unequal crossing over are the proposed mechanisms for concerted evolution of tandemly repeated sequences, whereas dispersed genes are homogenized by gene conversion. However, the homogenization mechanisms for multiple-copy, normally dispersed, prokaryotic rRNA genes are not well understood. Here we compared the sequences of multiple paralogous rRNA genes within a genome in 12 prokaryotic organisms that have multiple copies of the rRNA genes. Within a genome, putative sequence conversion tracts were found throughout the entire length of each individual rRNA genes and their immediate flanks. Individual conversion events convert only a short sequence tract, and the conversion partners can be any paralogous genes within the genome. Interestingly, the genic sequences undergo much slower divergence than their flanking sequences. Moreover, genomic context and operon organization do not affect rRNA gene homogenization. Thus, gene conversion underlies concerted evolution of bacterial rRNA genes, which normally occurs within genic sequences, and homogenization of flanking regions may result from co-conversion with the genic sequence. Received: 31 March 2000 / Accepted: 15 June 2000