Crystal Structure of Organolanthanide Complexes [Li(THF)2]2 (μt-Cl)4(η5-C5 H5 )Ln·THF (Ln = La,Nd)

The crystal and molecular structures of the title compounds have been determined from single crystal X-ray diffraction. The two complexes crystallize in the orthorhombic space group Pna2₁ with Z = 4. Lattice parameters are: a = 10.504(2) [10.522(2)], ¹b = 16.816(4) [16.927(3)] and c = 18.931(4) [18.969(3)] Å. The two crystals are isomorphous. The structures were solved by Patterson and Fourier techniques and refined by least-squares techniques to R = 0.0430 for 1508 reflections. The Nd³⁺. ion is eight-coordinate, being bonded to five carbons of the cyclopentadiene ring, to four chloride atoms and to the one oxygen atom of the THF ring. The NdC distances are in the range 2.67–2.85 Å (average: 2.77 Å) and Nd-Cl distances are in the range 2.76–2.80 Å (average: 2.78 Å). The Nd-O distance is 2.52 A. The Li⁺ ion is four-coordinate, being bonded to the two chloride atoms and to the two oxygen atoms of the two THF rings. The other Li⁺ ion is the same as the above. The Li-Cl distances are in the range 2.17– 2.55 Å (average: 2.35 A) and LiO distances are in the range 1.89–1.98 Å (average: 1.91 Å). The Nd atom and the two Li atoms are bridged asymmetrically by the chloride ions, respectively.     

Binuclear copper(II) complexes of tetradentate (Ne) diazine ligands. Crystal structures of [μ-1,4-Bis(4,6-dimethyl-2-pyridylamino)phthalazine-N,μ-N3,μN3,N]-(μ-Dichloro)dichlorodicopper(II), [μ-3,6-Bis(2-pyridylthio)pyridazine-N,μ-N1,μ-N2,N] (μ-dichloro)dichlorodicopper(II) ethanol,and 3,6-Bis(2-pyridylthio)-pyridazine

The X-ray structures of two binuclear copper(II) chloride complexes of the tetradentate ligands 1,4- bis(4,6-dimethyl-2-pyridylamino)phthalazine (PAP46Me) and 3,6-bis(2-pyridylthio)pyridazine are reported. [Cu₂(PAP46Me)Cl₄] (1) and [Cu₂(PTP)Cl₄]· CH₃CH₂OH (2) contain triply bridged binuclear centres involving a diazine (NN) and two chlorobridges with copper-copper separations in the fange 3.19–3.25 Å and distorted square pyramidal copper stereochemistry. The reduced room temperature magnetic moments indicate antiferromagnetically coupled binuclear copper(II) centres.Complex 1 forms green crystals with a= 15.795(3), b=10.661(3), c=16.155(4) Å, β= 113.82(3)°, C2/c, Z = 4, R_f=0.031. Complex (2) forms green crystals with a=33.9022(8), b= 9.1626(5), c= 15.7885(5) Å,β= 114.853(2)°, C2/c, Z=8, R_f=0.047. The structure of the ligand PTP is also reported and compared with that of 2.     

Synthesis of [{Os3(CO)10(μ2-H)}2{μ2,μ2-NC6H4C6H4N}] and [{Os3(CO)9(μ2-H)PPh3}2{μ2,μ2-NC6H4C6H4N}]: Carbon–carbon bond formation promoted by organorhodium species

Synthesis and characterization of linked cluster [{Os₃(CO)₁₀(μ₂-H)}₂{μ₂,μ₂-NC₆H₄C₆H₄N}] (1) from the reaction of [Os₃Rh(μ-H)₃(CO)₁₂] with aniline in the presence of an excess amount of 4-vinyl phenol in refluxing heptane is reported. A similar reaction with [Os₃(CO)₁₀(NCMe)₂] as starting material gave a known compound, [Os₃(CO)₁₀(μ₂-H)(μ₂-HNC₆H₅)] (2). The treatment of complexes 1 and 2 with Wilkinson’s catalyst in refluxing heptane respectively, yielded [{Os₃(CO)₉(μ₂-H)PPh₃}₂{μ₂,μ₂-NC₆H₄C₆H₄N}] (3). An interesting and unexpected C–C coupling of phenyl-amido ligands was observed in complexes 1 and 3, which is believed to be catalysed by the organometallic rhodium species. The newly synthesized compounds 1 and 3 were fully characterized by IR, ¹H NMR spectroscopy, mass spectroscopy, elemental analysis, and X-ray crystallography. Both structures 1 and 3 comprise two triangles of osmium atoms. The two triangular osmium metal cores are linked by a bi-amido ligand via the two nitrogen atoms N(1) and N(1)* and N(1) and N(2), at their equatorial sites. The electronic absorption spectra of complexes 1, 2, and 3 display both low energy absorption, dπ (Os) → π* (amido) metal-to-ligand charge-transfer (MLCT) transition, and π → π* intra-ligand electronic transitions of the amido and bi-amido ligands.     

Synthesis of (NBu4)2[Pd2(μ-Br)2(C6X5)2Br2] (X=F,Cl), new and more versatile precursors of pentahalophenyl derivatives of palladium(II)

The title compounds (1, X=F; 2, X=Cl) were obtained in quantitative yield by refluxing together (NBu₄)₂[Pd₂(μ-Br)₂(C₆X₅)₄] and (NBu₄)₂[Pd₂(μ-Br)₂Br₄]. Treatment of 1 or 2 with AgClO₄ (Pd:Ag= 1:1) gave solutions which behaved as containing ‘Pd(C₆X₅)Br’. 1, 2 and the ‘Pd(C₆X₅)Br’ solutions were checked as precursors of mono-pentahalophenyl derivatives, yielding a variety of complexes [Pd(C₆X₅)Br(L-L)] (L-L=bipy, tmen, dpe, COD), [Pd(C₆X₅)BrL₂] (L=p-TolNH₂, py, PPh₃, AsPh₃, SbPh₃), [Pd₂(μ-Br)₂(C₆X₅)₂L₂] (X=F, L=AsPh₃; X=Cl, L=SbPh₃) and (NBu₄)[Pd(C₆X₅)Br₂L] (X=F, L= py, AsPh₃, SbPh₃; X=Cl, L=p-TolNH₂, py, PPh₃, AsPh₃, SbPh₃). The solutions of ‘Pd(C₆X₅)Br’ proved to be the best general precursors of complexes [Pd(C₆X₅)BrL₂] although complexes with OPPh₃ could not be obtained.     

Microbiological synthesis of 5-ethyl- and (E)-5-(2-bromovinyl)-2′-deoxyuridine

Summary The title compounds were prepared by an enzymatic transdeoxyribosylation from 2 dGuo or 2 dThd to the respective heterocyclic bases, 5-ethyluracil and (E)-5-(2-bromovinyl)uracil, using the whole bacterial cells ofEscherichia coli as a biocatalyst.     

Microsecond single-molecule tracking (μsSMT)

Here we report on a method to track individual molecules on nanometer length and microsecond timescales using an optical microscope. Our method is based on double-labeling of a molecule with two spectrally distinct fluorophores and illuminating it with laser pulses of different wavelengths that partially overlap temporally. We demonstrate our method by using it to resolve the motion of short DNA oligomers in solution down to a timescale of 100 μs.     

Oxo-bridged Ta(+3) dimers, (TaCl2L2)2(μ-O)(μ-SR2), revisited. Structural differences between isoelectronic μ-O and μ-OH complexes

The compounds Ta₂Cl₄(dmpe)₂(μ-Me₂S)(μ-O) (1) and Ta₂Cl₄(py)₄(μ-THT)(μ-O) (2) where dmpe = Me₂PCH₂CH₂PMe₂ and THT = tetrahydrothiophene, have been prepared and structurally characterized. They are authentic examples of μ-O bridged Ta^IIITa^III edge-sharing bioctahedral complexes. Their structures are virtually identical with respect to all of the bonds that they have in common. However, the structure of 1 differs significantly in its TaTa, TaO and one type of TaCl distance from the previously reported Ta₂Cl₄(dmpe)₂(μ-Me₂S)(μ-O)·HCl (3). These differences show that in 3 there is a μ-OH group hydrogen bonded to a Cl⁻ ion. The structural differences attendant upon the μ-OH ⇌ μ-O change are of general interest and are discussed. The crystallographic data for the new compounds are as follows: 1: monoclinic (P2₁/c) with a = 10.412(2), b = 14.749(2), c = 22.177(3) Å, β = 99.25(1)°, V = 3361(1) ų and Z = 4. 2: monoclinic (P2₁/a) with a = 18.238(4), b = 10.402(3), c = 19.070(2) Å, β = 95.37(2), V = 3602(2) ų and Z = 4.     

A Solid-Phase Synthesis of 2′,5′-Linked Oligoadenylates (2-5A)

Abstract

2′,5′-Oligoadenylate 5′-triphosphates (2-5A) as products of 2-5A synthetase and activators of ribonuclease L (RNase L), are mediators in one of the mechanisms of interferon′s antiviral action. Upon activation, RNase L inhibits protein synthesis due to the degradation of RNAs. This activity of 2-5A could possibly find an application in virus or cancer chemotherapy, but two major barriers prevent the use of 2′,5′-linked oligoadenylates as therapeutic agents. The 2-5A is readily degraded by a 2′,5′ phosphodiesterase and as a highly negatively charged molecule, is not readily taken up by cells. One possible solution to this latter limitation might be found in chemical modifications of the 2-5A structure. Many analogues of 2-5A have been already obtained with modified base, ribose or phosphate moieties. While these have provided some important information about the enzyme- activator interactions, the cell permeability problem still remains unsolved. One of the major obstacles in this study is lack of a convenient method of synthesis of 2′,5′ ribonucleotides of widely varying structure.     

Synthesis and structure of a novel molybdenum-iron-sulfur cluster with Mo2Fe2 core and all-disulfide chelate ligands, [Mo2Fe2(μ3-S)4(S2CNEt2)5] CH3CN

The cluster compound [Mo₂Fe₂(μ₃-S)₄- (S₂CNEt₂)₅]CH₃CN has been prepared from the reaction system containing (NH₄)₂MoS₄, FeCl₃, NaS₂CNEt₂, PhSH and NaOCH₃. The crystal and molecular structure have been determined by the low temperature X-ray diffraction technique. The compound crystallizes in space group P2₁/c of the monoclinic system with a = 19.397(7), b = 10.891(7), c = 24.302(8) Å, β = 108.95(2)° and Z = 4. With use of 2647 reflections (I)>2.5σ(I)) the structure was refined to R(R_w) = 0.045(0.036). The cluster Mo₂Fe₂S₄(S₂CNEt₂)₅ has a cubane-like skeleton [Mo₂Fe₂S₄]⁵⁺. Each metal atom is coordinated by three μ₃-S atoms and a disulfide chelate terminal ligand. The fifth S₂CNEt₂ group as a bridging ligand coordinates to two Mo atoms. In a molecule of the compound, the two Mo atoms are equivalent but the two Fe atoms are unequivalent.     

Ligand substitution reactions of bis(μ-acetato)dichlorodicarbonyldiiridium(II)

Seven diiridium(II) complexes were synthesized by ligand substitution reactions of [Ir₂(μ-O₂CMe)₂Cl₂(CO)₂] (1) and [Ir₂(μ-O₂CMe)₂Cl₂(CO)₂(py)₂] (2).The reaction of 2 with the silver salt of a less coordinating anion, AgSbF₆, gave a cationic complex [Ir₂(μ-O₂CMe)₂Cl(CO)₂(py)₃]SbF₆ (3).A tricarbonyl cationic complex [Ir₂(μ-O₂CMe)₂(CO)₃Cl(py)₂]SbF₆ (4) was obtained under a CO atmosphere.Complex 2 reacted with AgO₂CCF₃ to give [Ir₂(μ-O₂CMe)₂Cl(O₂CCF₃)(CO)₂(py)₂] (5) in toluene.[Ir₂(μ-hiq)₂(CO)₂Cl₂] (Hhiq = 1-hydroxyisoquinoline, 6) was synthesized by the bridging-ligand substitution of 1 with Hhiq.Its axial adducts [Ir₂(μ-hiq)₂Cl₂(CO)₂L₂] (L = Mepy (4-methylpyridine), 7 or PPh₃, 8) were synthesized by addition of the ligands to a suspension of 6.In the structures of 7 and 8, two iridium atoms are bridged by two hiq ligands in a head-to-tail arrangement.The reaction of 1 with Hmhp (2-hydroxy-4-methylpyridine) led to triply bridged [Ir₂(μ-mhp)₃(CO)₂Cl(Hmhp)] (9).In complex 9, all the mhp ligands bridge between the Ir atoms in a head-to-head manner.The Ir-Ir distances of 3, 4, 5, 7 and 8 are 2.6047(7), 2.6216(9), 2.5899(9), 2.5933(5) and 2.634(2) Å, respectively, which are similar to those observed in[Ir₂(μ-O₂CMe)₂Cl₂(CO)₂L₂]. The Ir-Ir distance of 2.5512(4) Å in 9 is shorter than in the other complexes.     

Ferromagnetic exchange coupling in the linear,chloride-bridged cluster (cyclam)CoII[(μ-Cl)UIV(Me2Pz)4]2

The trinuclear cluster (cyclam)Co[(μ-Cl)U(Me₂Pz)₄]₂ (cyclam = 1,4,8,11-tetraazacyclotetradecane, Me₂Pz^? = 3,5-dimethylpyrazolate) is synthesized through cleavage of the homoleptic dimer [U(Me₂Pz)₄]₂ by (cyclam)CoCl₂. A single crystal X-ray diffraction analysis reveals a linear chloride-bridged structure analogous to that previously reported for (cyclam)M[(μ-Cl)U(Me₂Pz)₄]₂ (M = Ni, Cu, Zn). The magnetic exchange coupling of the CoU₂ cluster was probed by analyzing the temperature dependence of its magnetic susceptibility. Comparison of χ_MT versus T between the CoU₂ species and the diamagnetic ZnU₂ cluster demonstrates the presence of ferromagnetic coupling between the Co^II and U^IV centers. We present methods for estimating upper and lower bounds for the exchange interaction energy in such systems and find that for CoU₂, the exchange constant, J, lies in the range 15–48 cm^?1. Application of these methods to the previously reported NiU₂ cluster suggests somewhat weaker ferromagnetic exchange, with J lying in the range 2.8–19 cm^?1. AC magnetic susceptibility experiments were not indicative of single-molecule magnet behavior for the CoU₂ cluster, although qualitative interpretation of the low-temperature magnetization data suggests the presence of significant zero-field splitting in the ground state.     

Resonance Raman studies of the peroxotitanate(IV) complexes K2(Ti(O2)(SO4)2)·5H2O and K2(Ti(O2)(C2O4)2)·3H2O

The resonance Raman spectra of K₂(Ti(O₂)(SO₄)₂)·5H₂O and K₂(Ti(O₂)(C₂O₄)₂)·3H₂O are recorded. The results are consistent with the triangular structure of the peroxotitanium unit, Ti(O₂), with C_2ν symmetry. The ν(OO), ν_s(TiO) and ν_as(TiO) are observed around 890, 610 and 535 cm⁻¹, respectively. The resonance effects are shown to be associated with the 425 nm absorption band. This band is assigned to the O₂²⁻ → Ti(IV) charge-transfer transition. The calculated force constant values for the O₂²⁻ and TiO bonds are 320 and 275 N m⁻¹, respectively.