Chromosome banding in amphibia

A cytogenetic study performed on a population of the South American leptodactylid frog Eleutherodactylus maussi revealed multiple sex chromosomes of the X₁X₁X₂X₂/X₁X₂Y (=XXAA/XXA^Y) type. The diploid chromosome number is 2n=36 in all females and 2n=35 in most males. The multiple sex chromosomes originated by a centric fusion between the original Y chromosome and a large autosome. In male meiosis the X₁X₂Y (=XXA^Y) multiple sex chromosomes form a classical trivalent configuration. E. maussi is the first species discovered in the class Amphibia that is distinguished by a system of multiple sex chromosomes. Only one single male was found in the population with 2n=36 chromosomes and lacking the Y-autosomal fusion. This karyotype (XYAA) is interpreted as the ancestral condition, preceding the occurrence of the Y-autosome fusion.by H.C. Macgregor     

Cytogenetic,cross-mating and molecular evidence of four cytological races of Anopheles crawfordi (Diptera: Culicidae) in Thailand and Cambodia

Twenty-nine isolines of Anopheles crawfordi were established from wild-caught females collected from cow-baited traps in Thailand and Cambodia. Three types of X (X₁, X₂, X₃) and four types of Y (Y₁, Y₂, Y₃, and Y₄) chromosomes were identified, according to differing amounts of extra heterochromatin. These sex chromosomes represent four metaphase karyotypes, i.e., Forms A (X₁, X₂, X₃, Y₁), B (X₁, X₂, X₃, Y₂), C (X₂, Y₃) and D (X₂, Y₄). Forms C and D are novel metaphase karyotypes confined to Thailand, whereas forms A and B appear to be common in both Thailand and Cambodia. Cross-mating experiments between the four karyotypic forms indicated genetic compatibility in yielding viable progenies and synaptic salivary gland polytene chromosomes. The results suggest that the forms are conspecific and A. crawfordi comprises four cytological races, which is further supported by very low intraspecific variation (mean genetic distance = 0.000–0.018) of the nucleotide sequences in ribosomal DNA (ITS2) and mitochondrial DNA sequences (COI, COII).     

A bisexual multitype branching process with applications in population genetics

A bisexual multiple branching process is studied. Consider a population with respect to three genotypes in both the female and male populations and let $$X(n) = \left\langle {X_1 (n), X_2 (n), X_3 (n)} \right\rangle and Y(n) = \left\langle {Y_1 (n), Y_2 (n), Y_3 (n)} \right\rangle$$ be random vectors giving the number of females and males (respectively) of each genotype in generationn. The mating of females and males is accommodated in the model withZ _ij (n) representing the number of females of theith genotype mated with a male of thejth genotype in generationn. The mating system is such that a female may be mated to only one male but a male may be mated with more than one female. By arranging the nine random variablesZ _ij (n),i, j=1, 2, 3, in a 1×9, vectorZ(n) it is shown that under certain conditions there is a positive constant ? such that when ?>1 the vectorsZ _n /ρⁿ,X _n /ρⁿ andY _n /ρⁿ converge almost surely asn→∞ to random vectors with fixed directions. The paper is divided into four sections. In section 1 the model is described in detail and its potential applications to population genetics are discussed. In section 2, the generating function of the transition probabilities of theZ-process are derived. Section3 is devoted to the study of the limiting behavior of the first and second moments of theZ-process, and in section4 the results of section3 are utilized to study the behavior of the random vectorsZ(n),X(n) andY(n) asn→∞.     

Cytogenetic,hybridization and molecular evidence of four cytological forms of Anopheles nigerrimus (Hyrcanus Group) in Thailand and Cambodia

Thirteen isoline colonies of Anopheles nigerrimus were established from individual wild‐caught females collected from cow‐baited traps at locations in Thailand and Cambodia. Three types of X (X₁, X₂, X₃) and 4 types of Y (Y₁, Y₂, Y₃, Y₄) chromosomes were recovered, according to differing amounts of extra heterochromatin. Four karyotypic forms were designed depending upon apparently distinct figures of X and Y chromosomes, i.e., Form A (X₁, X₂, X₃, Y₁), B (X₂, X₃, Y₂), C (X₁, Y₃), and D (X₃, Y₄). Forms C and D were new metaphase karyotypes discovered in this study. Form A appeared to be common in both Thailand and Cambodia. Forms B and D were found to be rather specific to southern and northeastern Thailand, respectively, whereas Form C was confined to Cambodia. Hybridization experiments among the eight isoline colonies, which were representative of four karyotypic forms of An. nigerrimus, demonstrated genetic compatibility in giving viable progenies and synaptic salivary gland polytene chromosomes through F₂‐generations. These results elucidated the conspecific relationship, comprising four cytological forms within this taxon. Supportive evidence was confirmed further by very low intraspecific sequence variations (average genetic distance = 0.002–0.007) of the nucleotide sequences in ribosomal DNA [second internal transcribed spacer (ITS2)] and mitochondrial DNA [cytochrome c oxidase subunit I (COI) and subunit II (COII)].     

The Clinical Significance and Risk Factors of Solitary Lymph Node Metastasis in Gastric Cancer

Aims

To assess the clinical significance and risk factors of solitary lymph node metastasis (SLM) in gastric carcinoma and establish a more accurate method to evaluate the possibility of lymph node metastasis (LM).

Methods

A total of 385 patients with gastric carcinoma who underwent D2 lymphadenectomy at the Cancer Center of Sun Yat-Sen University were included in this research. Then we used a group of data from Sun Yat-sen University Gastrointestinal Hospital (SYSUGIH) to validate the accuracy of our developed method. The χ² test, Kaplan–Meier analysis, log-rank test, COX model, and discriminate analysis were used to analyze the data with SPSS13.0.

Results

We found that the LM number and pathological T staging were independent prognostic risk factors. CEA grading, LN status by CT, and T staging by CT were independent risk factors for LM in gastric carcinoma. In addition, we developed the equation Y = -5.0 + X ₁ + 1.8X ₃ + 0.7X ₄ (X ₁ = CEA grading, X ₃ = LN status by CT, X ₄ = T staging by CT) to evaluate the situation of LM. The data from SYSUGIH shows this equation has a better accuracy compared with CT.

Conclusions

SLM is an independent risk factor in gastric cancer. And there was no survival difference between the skip metastasis group and the other SLM group (P = 0.659). It is inappropriate for the patient with SLM doing a standard D2 lymphadenectomy, due to the fact that LM rarely occurs in the splenic artery, splenic hilum. The risk factors for LM include CEA grading, LN status by CT, and T staging by CT. And we can use Y = -5.0 + X ₁ + 1.8X ₃ + 0.7X ₄ (X ₁, CEA grading, X ₃ = LN status by CT, X ₄ = T staging by CT, the critical value is 0.3) to estimate the possibility of LM, which has a better accuracy compared with CT.     

Rheological behaviour of high density continuous cultures of Saccharomyces cerevisiae

By culture of Saccharomyces cerevisiae with cell recycle using tangential microfiltration, high cell concentrations are obtained (in the range of 0 to 345 gl⁻¹ dry-weight). The rheological properties of the cell suspension during the cell growth were studied. Over a wide range of biomass concentration (X<275 gl⁻¹D.W.) the power-law model was found adequate to describe the rheological behaviour of the broth. Pronounced non-Newtonian (pseudoplastic) behaviour occurred for X > 75 gl⁻¹. Experimental correlations for apparent viscosity (n_a, mPa.s) and power-law index vs. biomass concentration (X, gl⁻¹) were established: n_a = (1+0.012X)² suitable over the whole range of concentration up to 275 gl⁻¹ D.W. n_a = 1+0.04X in the low concentration range; X<100 gl⁻¹D.W. Beyond the cell concentration of 275 gl⁻¹ D.W. the viscosity increases suddenly.     

Cytogenetic characterization of ten araneomorph spiders (Araneae): Karyotypes and meiotic features

Karyotypes, sex chromosome systems and meiotic characteristics are reported for ten spider species belonging to the families Gnaphosidae, Philodromidae, Salticidae, Oxyopidae and Sicariidae by using standard Giemsa staining. The male diploid numbers (2n) and sex chromosome systems are as follows: Berinda hakani 2n = 22 (X₁X₂), Berinda ensigera 2n = 22 (X₁X₂), Trachyzelotes lyonneti 2n = 22 (X₁X₂), Trachyzelotes malkini 2n = 22 (X₁X₂), Zelotes caucasius 2n = 22 (X₁X₂) (Gnaphosidae); Thanatus pictus 2n = 28 (X₁ X₂), Tibellus macellus 2n = 24 (X₁ X₂) (Philodromidae); Neon reticulatus 2n = 21 (X₀) (Salticidae); Peucetia virescens 2n = 28 (X₁X₂) (Oxyopidae) and Loxosceles rufescens 2n = 21 (X₁ X₂Y) (Sicariidae). All species have monoarmed chromosomes with the exception of L. rufescens that has biarmed (metacentric and submetacentric) chromosomes. The obtained data are the first results for the genera Berinda, Trachyzelotes and Neon. Additionally, with the exception of L. rufescens, all species are being chromosomally analyzed for the first time.     

A rapid assay for the binding of actinomycin to DNA.

The theory of countercurrent distribution (CCD) was reviewed and extended. The separation function for the fundamental distribution of CCD was presented in the form n = t²(αk₁+β)²/αk₁(β?1)² where n is the number of transfers, t the abscissa of the standard normal distribution, α = v_m/v₈ the phase ratio, β = k₁/k₂≥ 1 the separation factor, and k₁ the partition coefficient of the more radidly moving component; n was found to be minimal on the condition αk₁ = β. The separation function for the single withdrawal of CCD was obtained in the form N = u + 1 = t²{(αk₁ + 1)^1/2 + [β(αk₁ + β)]^1/2}²/(β ? 1)²+ 1, where N is the number of partition units. From this equation it appears that N is minimal when αk₁ = 0. Compared with the former separation functions presented in the literature, these separation functions have the advantage of giving directly the relationships among the phase ratio, the absolute partition coefficient, the separation factor, the resolution degree, and the number of transfers or partition units required. In addition, the dependencies of the elution volumes and the widths of the elution curves on α, β, and the partition coefficients were considered mathematically by means of differential calculus. The elution volumes were found to have minima at certain αk₁ values. The standard deviations, on the contrary, did not have minima in respect to αk₁. The theory presented can be used for selecting proper operating conditions while separating chemical compounds.     

Kinetic characterization of the Escherichia coli oligopeptidase A (OpdA) and the role of the Tyr residue

Oligopeptidase A (OpdA) belongs to the M3A subfamily of bacterial peptidases with catalytic and structural properties similar to mammalian thimet-oligopeptidase (TOP) and neurolysin (NEL). The three enzymes have four conserved Tyr residues on a flexible loop in close proximity to the catalytic site. In OpdA, the flexible loop is formed by residues 600-614 (⁶⁰⁰SHIFAGGYAAGYYSY⁶¹⁴). Modeling studies indicated that in OpdA the Tyr⁶⁰⁷ residue might be involved in the recognition of the substrate with a key role in catalysis. Two mutants were constructed replacing Tyr⁶⁰⁷ by Phe (Y607F) or Ala (Y607A) and the influence of the site-directed mutagenesis in the catalytic process was examined. The hydrolysis of Abz-GXSPFRQ-EDDnp derivatives (Abz = ortho-aminobenzoic acid; EDDnp N-[2,4-dinitrophenyl]-ethylenediamine; X = different amino acids) was studied to compare the activities of wild-type OpdA (OpdA WT) and those of Y607F and Y607A mutants The results indicated that OpdA WT cleaved all the peptides only on the X-S bond whereas the Y607F and Y607A mutants were able to hydrolyze both the X-S and the P-F bonds. The kinetic parameters showed the importance of Tyr⁶⁰⁷ in OpdA catalytic activity as its substitution promoted a decrease in the k_cat/K_m value of about 100-fold with Y607F mutant and 1000-fold with Y607A. Both mutations, however, did not affect protein folding as indicated by CD and intrinsic fluorescence analysis. Our results indicate that the OpdA Tyr⁶⁰⁷ residue plays an important role in the enzyme-substrate interaction and in the hydrolytic activity.     

Synthesis,FT-IR and 1H NMR studies of alkali and alkaline earth metal complexes with guanosine

The synthesis of complexes of Li(I), K(I), Mg(II), Ca(II) and Ba(II) with guanosine in basic non aqueous solutions is described. The complexes were of two types: (1) complexes having the general formula, M(Guo)_nX_m·YH₂O·ZC₂H₅OH, where M = Mg(II), Ca(II), Ba(II) and Li(I), n = 1,2,4, X = Cl^?, Br^?, NO₃^?, ClO₄^? and OH^?, m = 1,2, Y = 0?6 and X = 0?2, and (2) complexes with the general formula, M(GuoH-1)(OH)_n^?1·YH₂O, where M = K(I), Ca(Il) and Ba(II), GuoH-1 =Ionized guanosine at N₁, n = 1,2 and Y = 1?3. The complexes are characterized by their proton nuclear magnetic resonance (¹H NMR) and Fourier transform infrared (FT-IR) spectra. The FT-IR and ¹H NMR data of the non ionized nucleoside complexes suggest that the metal binding is through the N₇-site of guanine and that the anion (X) is hydrogen bonded to N₁H and NH₂ groups. In the N₁-ionized guanosine complexes the metal binding is via the O₆^? of guanine. All the complexes formed exhibited a transition of the sugar conformation from C₂′-endo/anti in the free nucleoside to C₃′-endo/anti in the metal complexes.     

An example of a regular inbreeding system with cubic ancestral growth that preserves some genetic variability

A specific regular inbreeding system of quadruple half-second cousin mating is considered. A regular inbreeding system can be thought of as a graph which satisfies certain natural homogeneity properties. Random walks X _n and Y _n are introduced on the nodes of the graph; the event {X _n=Y_n} is a renewal event by the homogeneity properties. In Arzberger (1985) it is shown that 1) graphs associated with left cancellative semigroups are regular, and 2) for regular systems, the population becomes genetically uniform if and only if the event {X _n=Y_n} is recurrent. In Arzberger (1986) the system of quadruple half-second cousin mating is associated with a cancellative semigroup, thus the system is regular. In this paper we show that 1) A_n is asymptotically of the form cn ³, where A _n is the number of ancestors n generations into the past, 2) {X _n=Y_n} is not recurrent (this is shown by associating (X _n, Y _n) with a random walk in Z ³, 3) P[X _3n =Y _3n ] is asymptotically of the form cn ^–3/2. Thus, in this example, genetic heterogeneity is maintained, with a cubic rate of growth for A_n, not by an exponential growth rate, as in all previous examples of regular inbreeding systems in which genetic heterogeneity is maintained.     

Synthesis and characterization of bis(4,4,4-trifluoro-1-(2-thienyl)-1,3-butanedionato) strontium and barium adducts with O- and N- ancillary ligands; crystal structure of Sr(tftb)2(batcp)

Complexes of type [M(tftb)₂L_n] [M=Sr; n=1, L=tetraglyme (4), 2,3-benzo-10-aza-1,4,7,13-tetraoxacyclopentadeca-2-ene (batcp) (5), n=2, L=2,2^′-bipyridine-N,N^′ (bipy) (6); M=Ba; n=1, L=tetraglyme (7), 2,3-benzo-10-aza-1,4,7,13-tetraoxacyclopentadeca-2-ene (batcp) (8); n=2, L=2,2^′-bipyridine-N,N^′ (bipy) (9)] were prepared by in situ reactions of 4,4,4-trifluoro-1-(2-thienyl)-1,3-butanedione (Htftb) (1) with M(OH)₂ [M=Sr (2a); Ba (2b)] in the presence of the ancillary ligands L (3a: L=tetraglyme; 3b: L=2,3-benzo-10-aza-1,4,7,13-tetraoxacyclopentadeca-2-ene (batcp); 3c: L=2,2^′-bipyridine-N,N^′ (bipy)) in aqueous ethanol. The compounds were obtained in high yields and characterized by elemental analysis, ¹H NMR, mass spectrometry and IR analysis. Molecular structure of the [Sr(tftb)₂(batcp)] (5) has been determined by X-ray single crystal analysis.     

Structures and aromaticity of X2Y 2 − (X = C, Si, Ge and Y = N, P, As) anions

The equilibrium geometries, total energies, and vibrational frequencies of anions X₂Y₂ ⁻ (X = C, Si, Ge and Y = N, P, As) are theoretically investigated with density functional theory (DFT) method. Our calculation shows that for C₂N₂ ⁻ species, the D _2h isomer is the most stable four-membered structure, and for other species the C _2v isomer in which two X atoms are contrapuntal is the most stable structure at the B3LYP/6-311 +G_* level. Wiberg bond index (WBI) and negative nucleus-independent chemical shift (NICS) value indicate the existence of delocalization in stable X₂Y₂ ⁻ structures. A detailed molecular orbital (MO) analysis further reveals that stable isomers of these species have strongly aromatic character, which strengthens the structural stability and makes them closely connected with the concept of aromaticity.     

Chromosomal segregational mechanisms in ant-lions (Myrmeleontidae,Neuroptera)

In a single male specimen of Myrmeleon mexicanum Banks the sex chromosomes, normally X and Y, were replaced by what appeared to be X¹X² and Y. These segregated as expected on that interpretation in only half of the spermatocytes — in the other half, one X and the Y segregated from the other X. This atypical segregation is explicable on the assumption that one of the supposed Xs is a supernumerary, not a sex chromosome, and the diploid complement of the male comprises six pairs of autosomes plus a supernumerary and the X and Y sex chromosomes. The orientation of the X chromosomes at first metaphase was variable: kinetochoric activity may be localized midway the length of the chromosome, as in gonial mitosis, or terminally. Comparative study of three congeneric species, seven of Brachynemurus, one of Psammoleon, and one of Vella showed normal segregation in all, and no evidence for secondary kinetochoric activity. In nine of the species studied one pair of autosomes was unconjoined at first metaphase in 0.3%–1.2% of primary spermatocytes. These autosomes segregated precociously with the sex chromosomes in the central unit of the spindle. In one exceptional male of Brachynemurus hubbardi Currie all first meiotic metaphases showed this behavior, and a compound X¹X²/Y¹Y² system was thus simulated. Bivalent formation replaced distance segregation of sex chromosomes in 0.4%–3.2% of the spermatocytes in seven of the thirteen species studied. These sex-bivalents frequently displayed partial or complete failure in congression.     

Site specific <Emphasis Type="Italic">N</Emphasis>-glycan profiling of NeuAc(α2-6)-Gal/GalNAc-binding bark <Emphasis Type="Italic">Sambucus nigra</Emphasis> agglutinin using LC–MS<Superscript>n</Superscript> revealed differential glycosylation

The bark of Sambucus nigra contains a complex mixture of glycoproteins that are characterized as chimeric lectins known as type II ribosome inactivating proteins and holo lectins. These type II ribosome inactivating proteins possess RNA N-glycosidase activity in subunit A and lectin activity associated with subunit B exhibiting distinct sugar specificities to NeuAc(α2-6)-Gal/GalNAc and Gal/GalNAc. In the present study we have determined the N-glycosylation pattern of type II ribosome inactivating protein specific to NeuAc(α2-6)-Gal/GalNAc (Sambucus nigra agglutinin I) by subjecting it to digestion with multiple proteases. The resulting mixture of peptides and N-glycopeptides were analyzed on liquid chromatography coupled to electro spray ionization-iontrap mass spectrometry in MSⁿ mode. MS² of precursor ions was carried out using CID which provided information on glycan sequence. In subsequent MS³ of Y₁/Y_1α ions (peptide + HexNAc)⁺ⁿ of corresponding N-glycopeptides, resulted in the fragmentation of peptide backbone confirming the site of attachment. We observed microheterogeneity in each glycan occupied site with subunit A possessing four N-glycans out of six sites with complex and paucimannose types while subunit B comprises occupancy of two sites with a paucimannose and a high mannose type. The differential N-glycosylation of subunits in SNA is discussed in the context of other type II RIPs glycans.     

Backscattering of gyrotron radiation and short-wavelength turbulence during electron cyclotron resonance plasma heating in the L-2M stellarator

Backscattering of gyrotron radiation (θ = π) by short-wavelength density fluctuations (k _⊥ = 30 cm^?1) in the plasma of the L-2M stellarator was studied under conditions of electron cyclotron resonance (ECR) plasma heating at the second harmonic of the electron gyrofrequency (75 GHz). The scattering of the O-wave emerging due to the splitting of the linearly polarized gyrotron radiation into the X- and O-waves was analyzed. The signal obtained after homodyne detection of scattered radiation is a result of interference of the reference signal, the quasi-steady component, and the fast oscillating component. The coefficients of reflection of the quasi-steady component, R ₌ ² (Y), and fast oscillating component, R _～ ² (Y), of scattered radiation are estimated. The growth of the R _～ ² (Y) coefficient from 3.7 × 10^?4 to 5.2 × 10^?4 with increasing ECR heating power from 190 to 430 kW is found to correlate with the decrease in the energy lifetime from 1.9 to 1.46 ms. The relative density of short-wavelength fluctuations is estimated to be 〈n _～ ² 〉/〈n _e ² 〉 = 3 × 10^?7. It is shown that the frequencies of short-wavelength fluctuations are in the range 10–150 kHz. The recorded short-wavelength fluctuations can be interpreted as structural turbulence, the energy of which comprises ～10% of the total fluctuations energy. Simulations of transport processes show that neoclassical heat fluxes are much smaller than anomalous ones. It is suggested that short-wavelength turbulence plays a decisive role in the anomalous heat transport.     

Two μ1,5-dicyanamide bridged 2D and 3D metal complexes formed by covalent bonding and weak interactions

One 2D and one 3D dicyanamide bridged complexes, [Cu(dca)₂(et₂-en)]_n (1) and [Mn(dca)₂(im)₂]_n (2) [dca=dicyanamide, et₂-en=N,N-diethyl-ethylenediamine, im=imidazole], have been synthesized. Both the complexes are 1D by covalent bonding but interchain H-bonding promotes dimensionality. Moreover, π-π interaction among the imidazole ligands also plays an important role to have an interlocked 3D structure for 2. Magnetic study of both the complexes shows weak antiferromagnetic interaction between the metal centers. The magnetic data have been fitted with appropriate equations yielding best fit parameters for 1: J=−0.58±0.02 cm⁻¹, g=2.11±0.01 with R=3.2×10⁻⁶ and for 2, J=−0.21 cm⁻¹, g=2.00 and R=5.6×10⁻⁴.     

Methyl- and propylacetamidinates of lanthanides: Structures, catalytic and some physical properties

The acetamidinates {[MeNC(Me)NMe]₂Ln}₂[μ-η²-η²-MeNC(Me)NMe]₂ (Ln = Y (1), Dy (2)) and {[PrⁿNC(Me)NPrⁿ]₂Y}₂[μ-η²-η²-PrⁿNC(Me)NPrⁿ]₂ (3) have been prepared by the reactions of amides Ln[N(SiMe₃)₂]₃ with respective N,N′-disubstituted amidines MeNC(Me)NHMe or PrⁿNC(Me)NHPrⁿ. The reaction of Er[N(SiMe₃)₂]₃ with excess of monosubstituted amidine HNC(Me)NHPrⁱ or in a ratio of 1:2 resulted in the formation of compound {Er[NC(Me)NHPrⁱ]₃}_x (4). The same reaction with 1:1 ratio yielded heteroleptic complex {Er[N(SiMe₃)₂]₂[NC(Me)NHPrⁱ]}_x (5). The complexes 1, 2 and 3 have similar structures and contain four terminal and two μ-η²:η²-N,N-bridging amidinate groups binding the metal atoms. Volatility of 1, 2 and 3 is comparable to that of known monomeric La[PrⁱNC(R)NPrⁱ]₃. Compound 1 efficiently catalyzes the ring-opening polymerization of rac-lactide to give polylactide with M_n 53 085 and polydispersity 1.84.     

EPR properties of a g=2 broad signal trapped in an S1 state in Ca-depleted Photosystem II

We investigated a new EPR signal that gives a broad line shape around g=2 in Ca²⁺-depleted Photosystem (PS) II. The signal was trapped by illumination at 243 K in parallel with the formation of Y_Z. The ratio of the intensities between the g=2 broad signal and the Y_Z signal was 1:3, assuming a Gaussian line shape for the former. The g=2 broad signal and the Y_Z signal decayed together in parallel with the appearance of the S₂ state multiline at 243 K. The g=2 broad signal was assigned to be an intermediate S₁X state in the transition from the S₁ to the S₂ state, where X represents an amino acid radical nearby manganese cluster, such as D1-His337. The signal is in thermal equilibrium with Y_Z. Possible reactions in the S state transitions in Ca²⁺-depleted PS II were discussed.