Molecular phylogeny of the mainly Mediterranean genera Chaenorhinum,Kickxia and Nanorrhinum (Plantaginaceae,tribe Antirrhineae), with focus on taxa in the Flora Iranica region

Plantaginaceae tribe Antirrhineae as revised by Sutton (1988) comprises about 30 genera that have undergone significant taxonomic changes in recent years, many of which have yet to be assessed by detailed phylogenetic analyses, including Kickxia, Nanorrhinum and Chaenorhinum. To examine the monophyly, relationships and rank of Kickxia, Nanorrhinum and Chaenorhinum, we conducted a phylogenetic analyses of the nuclear ribosomal DNA internal transcribed spacer region (ITS) and chloroplast DNA (rpl32‐trnL) sequence data, with special focus on the Flora Iranica region. We sampled 22 species of Kickxia s.l. (16 of Kickxia s.s. and 6 of Nanorrhinum), 2 species of Anarrhinum, 12 species of Chaenorhinum, 19 representatives of nine additional genera of Antirrhineae, and several outgroup taxa representing other genera of Plantaginaceae. Parsimony and Bayesian analyses of the two datasets produced almost congruent trees, although taxon sampling differed. Our results indicate that Chaenorhinum can be subdivided into two highly supported groups of species, partially matching two of the currently recognized sections of the genus. Albraunia and Holzneria are nested within the Chaenorhinum clade and should not be recognized as distinct genera. Two clades corresponding to Kickxia sect. Kickxia and Kickxia sect. Valvatae were also highly supported. Our data, whn combined with all other available evidence, support recognition of the clade comprising Kickxia sect. Valvatae at the genus level, as Nanorrhinum. Based on this result, six names are here transferred to Nanorrhinum. A diagnostic key to the seven genera of tribe Antirrhineae known from the Flora Iranica region is also provided.     

Saccharopolyspora: an underexplored source for bioactive natural products

Actinomycetes are a rich source for secondary metabolites with a diverse array of biological activities. Among the various genera of actinomycetes, the genus Saccharopolyspora has long been recognized as a potential source for antibiotics and other therapeutic leads that belong to diverse classes of natural products. Members of the genus Saccharopolyspora have been widely reported from several natural sources including both terrestrial and marine environments. A plethora of this genus has been chemically investigated for the production of novel natural products with interesting pharmacological effects. Therefore, Saccharopolyspora is considered one of the pharmaceutical important genera that could provide further chemical diversity with potential lead compounds. In this review, the literature from 1976 until December 2018 was covered, providing a comprehensive survey of all natural products derived from this genus and their semi-synthetic derivatives along with their biological activities, whenever applicable. Moreover, the biological diversity of Saccharopolyspora species and their habitats were also discussed.     

Chemical constituents with prenyl substitution from the stem and root of Daphne giraldii Nitsche. (Thymelaeaceae)

Phytochemical characterization of the stem and root bark of Daphne giraldii Nitsche. led to the isolation of eight flavones (1–8), six flavans (9–14) and six coumarins (15–20). The structures of these compounds were examined with spectroscopic methods, and also by comparing to previously reported spectroscopic data. Among them, ten compounds (1–3, 9 and 15–20) are reported for the first time for this species, and all compounds with prenyl substitutions have not been identified in other species of genus Daphne, or even in the family Thymelaeaceae. We also describe the chemotaxonomic significance of these compounds.     

The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses

Sequences of the 16S rRNA gene were determined from all type strains of the recognized Ectothiorhodospira species and from a number of additional strains. For the first time, these data resolve the phylogenetic relationships of the Ectothiorhodospiraceae in detail, confirm the established species, and improve the classification of strains of uncertain affiliation. Two major groups that are recognized as separate genera were clearly established. The extremely halophilic species were removed from the genus Ectothiorhodospira and reassigned to the new genus Halorhodospira gen. nov., to recognize that the most halophilic eubacteria are species of this genus. These species are Halorhodospira halophila comb. nov., Halorhodospira halochloris comb. nov., and Halorhodospira abdelmalekii comb. nov. Among the slightly halophilic Ectothiorhodospira species, the classification of strains belonging to Ectothiorhodospira mobilis and Ectothiorhodospira shaposhnikovii was improved. Several strains that were tentatively identified as Ectothiorhodospira mobilis form a separate cluster on the basis of their 16S rDNA sequences and are recognized as two new species: Ectothiorhodospira haloalkaliphila sp. nov., which includes the most alkaliphilic strains originating from strongly alkaline soda lakes, and Ectothiorhodospira marina, describing isolates from the marine environment. Received: 12 October 1995 / Accepted: 1 December 1995     

Phylogeny,species diversity and biogeographic patterns of the genus Tricleocarpa (Galaxauraceae,Rhodophyta) from the Indo-Pacific region,including T. confertus sp. nov. from Taiwan

Among four different genera in Galaxauraceae, species diversity of the genus Tricleocarpa Huisman & Borowitzka is underestimated and requires further examination. In this study, we explored a molecular phylogeny of Tricleocarpa with an emphasis on Taiwan species and reassessed species diversity of the genus from the Indo-Pacific region based on analyses of rbcL and COI-5P sequences and morphological observations. The molecular analyses showed that species of Tricleocarpa examined are grouped into seven clades: six clades in the T. cylindrica group (the T. cylindrica complex, T. confertus, T. jejuensis, T. natalensis and two uncharacterized T. ‘cylindrica’ clades) and one clade as the T. fragilis group. Overall, at least 12 species in Tricleocarpa were detected from the Indo-Pacific region, including a new species, T. confertus S.-L. Liu & S.-M. Lin, from Taiwan. Among them, T. confertus can be separated from other species of Tricleocarpa by a thallus consisting of dichotomous or trichotomous, articulated and moniliform branches with smooth surfaces, constrictions at nodes and slightly anti-triangular in shape. The cystocarp morphology of T. confertus is similar to the T. cylindrica group by having paraphyses intermixing with gonimoblast filaments. Recognition of this new species from other species is also supported by the DNA-based, algorithmic species delimitation approaches. With the combination of molecular phylogeny and species diversity reassessment, our phylogeographic analysis supported a trend that species in the T. fragilis group are restricted in their distribution to subtropical and tropical areas whereas species in the T. cylindrica group have a wide distribution, ranging from temperate through to tropical areas.     

PHYLOGENETIC RELATIONSHIPS WITHIN THE GENUS HYPNEA (GIGARTINALES,RHODOPHYTA), WITH A DESCRIPTION OF H. CAESPITOSA SP. NOV.1

Species discrimination within the gigartinalean red algal genus Hypnea has been controversial. To help resolve the controversy and explore phylogeny within the genus, we determined rbcL sequences from 30 specimens of 23 species within the genus, cox1 from 22 specimens of 10 species, and psaA from 16 species. We describe H. caespitosa as a new species characterized by a relatively slender main axis; a pulvinate growth habit with entangled, anastomosing, and subulate uppermost branches; and unilaterally borne tetrasporangial sori. The new species occurs in the warm waters of Malaysia, the Philippines, and Singapore. The phylogenetic trees of rbcL, psaA, and cox1 sequences showed a distant relationship of H. caespitosa to H. pannosa J. Agardh from Baja California and the marked differentiation from other similar species. The rbcL + psaA tree supported monophyly of the genus with high bootstrap values and posterior probabilities. The analysis revealed three clades within the genus, corresponding to three sections, namely, Virgatae, Spinuligerae, and Pulvinatae first recognized by J. G. Agardh. Exceptions were H. japonica T. Tanaka in Pulvinatae and H. spinella (C. Agardh) Kütz. in Spinuligerae.     

Chemical constituents from Scutellaria hainanensis C. Y. Wu

Seventeen compounds were obtained from the extract of the whole plant of Scutellaria hainanensis C. Y. Wu. Including eleven flavonoids (1–4 and 7–13), two phenylpropanoids (16 and 17), one pyridinium derivative (5), one ester (6), one phenolic derivative (14), and one lignanoid (15). Compound 5 was a synthetic intermediate, newly identified as a natural product. The chemotaxonomic relationship between S. hainanensis C. Y. Wu and other species of genus Scutellaria were also discussed. As a result, the isolated glycoside compounds closely matched the ones obtained in other species of the genus.     

Molecular phylogeny and taxonomy of the genus Chaetophora (Chlorophyceae,Chlorophyta), including descriptions of Chaetophoropsis aershanensis gen. et sp. nov.

The broadly defined genus Chaetophora consisted of species with minute, uniseriate branching filaments enveloped in soft or firm mucilage forming macroscopic growths that are spherical, hemispherical, and tubercular or arbuscular, growing epiphytically on freshwater aquatic plants and other submerged surfaces in standing or fast‐flowing water. Recent molecular analyses clearly showed that this genus was polyphyletic. In this study, eight strains of Chaetophora and three strains of Stigeoclonium were identified and successfully cultured. In combination with the morphological data, a concatenated data set of four markers (18S + 5.8S + ITS2+ partial 28S rDNA) was also used to determine their taxonomic relationships and phylogenetic positions. The molecular analysis resolved the broadly defined Chaetophora to at least two genera. Species with a globose thallus of genus Chaetophora formed a separate monophyletic clade, which clearly separated from, a type of lobe‐form Chaetophora species. Therefore, we propose to erect a new genus, Chaetophoropsis, which includes all globose species of the Chaetophora. Chaetophoropsis aershanensis was determined to be a new species, based on its special characteristic of profuse long rhizoids. Stigeoclonium polyrhizum, as the closest relative to Chaetophoropsis, revealed its distant relationships to other species of Stigeoclonium. A globose thallus with a thick, soft mucilage matrix, and special rhizoidal branches lent further support to the placement of S. polyrhizum in the genus Chaetophoropsis and had the closest relationship to C. aershanensis. Taxonomic diversity was proven by distinctive morphological differences and by phylogenetic divergence in the broadly defined Chaetophora identified herein.     

Chemical constituents from the roots of Asarum sieboldii Miq. var. Seoulense Nakai

Fourteen compounds were isolated from the 95% ethanol reflux extract of Asarum sieboldii Miq. var. Seoulense Nakai, including five phenanthrene derivatives (1–5), three isobutyl amides (6–8), three phenylpropanoids (9–11) and three lignins (12–14). The structures of these compounds were identified by spectroscopic methods and by comparison with the reported spectroscopic data. Among them, compounds 6 and 11 were firstly reported from the family Aristolochiaceae, and compounds 3 and 4 were reported for the first time from the genus Asarum. Additionally, compounds 1, 2 and 8 were isolated from A. sieboldii Miq. var. Seoulense Nakai for the first time. These compounds have shown chemical relationships between A. sieboldii Miq. var. Seoulense Nakai and other species of Asarum as well as those found in the genus Aristolochia in the family Aristolochiaceae.     

New generic proposal for the European Neogene large testudinids (Cryptodira) and the first phylogenetic hypothesis for the medium and large representatives of the European Cenozoic record

Fossil testudinids are known in Europe since the Eocene, with several taxa of medium size (from more than 0.3 m to less than 0.7 m) recognized in the Palaeogene record, most of them being poorly known. The size of several European Neogene taxa was larger (between 1 and 2 m). These large testudinids were relatively abundant and diverse, ranging from the early Miocene to the Pleistocene. However, there is a nomenclatural gap at the generic level for the Neogene forms, as their generally used assignment to the more primitive Eocene Cheirogaster cannot be sustained. This is because relatively little material has been assigned to the described species, and also because of the absence of a detailed study comparing all of the European taxa. Here, the European Cenozoic taxa are incorporated for the first time in a data matrix, so that a hypothesis on their phylogenetic relationships is justified. This study identified the large testudinids from the Neogene of Europe as belonging to a monophyletic clade, assigned to the new genus T itanochelon . The hitherto poorly understood ‘Testudo’ bolivari, proposed nearly a century ago but lacking diagnosis, is analysed in detail. It is recognized as the best‐represented large testudinid from the European record, and is identified as the type species of T itanochelon gen. nov. Its comparison with the other Neogene species allowed a detailed study of the new genus and an analysis of its phylogenetic relationships with the other European taxa. © 2014 The Linnean Society of London     

In situ observation of the <Emphasis Type="Italic">Cardinium</Emphasis> symbionts of <Emphasis Type="Italic">Brevipalpus</Emphasis> (Acari: Tenuipalpidae) by electron microscopy

Brevipalpus (Acari: Tenuipalpidae) mites are important pests on a variety of host plant species. The mites damage their hosts directly by feeding and some species also serve as vectors of plant viruses. Among more than 200 described Brevipalpus species, three are recognized as vectors of plant viruses: B. phoenicis, B. californicus and B. obovatus. These species occur worldwide in subtropical and tropical regions. Brevipalpus mites reproduce mostly by thelytokous parthenogenesis and this condition was attributed to a bacterial endosymbiont, recently characterized as a member of the genus Cardinium. The same symbiont infects many other arthropods and is capable of manipulating their host reproduction in various ways. Generally the presence of Cardinium is determined by molecular, PCR based, techniques. In the current work we present visual evidence for the presence of these bacteria by transmission electron microscopy as a complement of previous detection by PCR. Cardinium is easily identified by the presence of a unique array of microtubule-like structures (ML) in the cell. Symbionts have been observed in several organs and eggs from different populations of all three Brevipalpus species known as vector of plant viruses. Cardinium cells were always immersed directly within the cytoplasm of infected cells. Bacteria were observed in all females of all instars, but were absent from all males examined. Females from some Brevipalpus populations were observed to be uninfected by Cardinium. This observation confirmed previous PCR-based results that these populations were aposymbiotic. The observed distribution of the bacteria suggests that these bacteria could have other functions in the mite biology beside feminization.     

Taxonomic studies of nectrioid fungi in Japan. III. The genus <Emphasis Type="Italic">Cosmospora</Emphasis>

Seven species of the genus Cosmospora collected in Japan are reported in this article. Among them, Cosmospora japonica is described as a new species. Cosmospora henanensis, C. rishbethii, and C. triqua, all of which are known only from their type localities, are added to the Japanese mycobiota. The other species, C. chaetopsinaecatenulatae, C. diminuta, and C. peponum, are new records for Japan. Additional distribution records are given for Cosmospora species hitherto known in Japan.     

Marine Amebae From Clean and Stressed Bottom Sediments of the Atlantic Ocean and Gulf of Mexico*,†,‡

SYNOPSIS Amebae isolated from sediments of the Atlantic Ocean and Gulf of Mexico were maintained in continuous culture and most were identified to genus and species. Twenty-six species representing 12 genera were recognized from existing literature and several others (Flabellula, Mastigamoeba, Cochliopododium) were identified only to genus. One ameboflagellate and several small limax-type amebae which require further study also were isolated. Other sarcodmids belonging to the Heliozoida, Testocida, Leptomyxida, and Proteomyxida were identified only tentatively. the distribution of the amebae and ameba-like organisms was tabulated for the following geographic areas: Atlantic Ocean near Long Island, New York: Atlantic Ocean 16-65 miles offshore from New York and New Jersey: Atlantic Ocean 1-50 miles offshore from Maryland and Delaware: and the Gulf of Mexico 3.5-41 miles offshore from the southeastern United States. Amebae present in shellfish holding trays at Lewis. Delaware, were isolated, and identified to compare the distribution of species in laboratory tanks with those present in natural ocean bottoms. Published accounts of each collection site were reviewed to obtain specific data on contamination with sewage wastes, acid wastes, dredge spoils, and petroleum hydrocarbons. Two previously undescribed amebae were found to represent new genera and species and are described herein, one from the Delaware mariculture facility, and the other from the digestive tract of the blue crab, Callinectes sapidus, and the gill surface of the lady crab, Ovalipes ocellatus. Sarcodinids present in clean or stressed environments were listed, and genera and species that were widespread or apparently geographically restricted were recorded.     

Essential oil composition and total metabolite content of a chemotype of Ajuga reptans L. (Lamiaceae) collected in Central Italy

In this work, an interesting application of phytochemistry for ethnopharmacological purposes was reported. In particular, the total phytochemical analysis of a single sample of Ajuga reptans L. (Lamiaceae) collected in Central Italy was carried out in order to provide a rationale for the use of this plant in folk medicine. This analysis was conducted on the volatile oil fraction by gas chromatography–mass spectroscopy (GC-MS) and on the polar one by means of classical column chromatography and nuclear magnetic resonance and MS. Thirty-nine volatile components were identified in the essential oil whereas 32 compounds were identified in the polar fraction. All of these are known to exert several beneficial medicinal activities and no potentially toxic compounds were identified such as the neo-clerodane diterpenoids, commonly evidenced in the entire genus. This study could provide a phytochemical rationale for the possible ethnopharmacological use of this specific species.     

亚草叶蝉属分类订正（半翅目：叶蝉科：角顶叶蝉亚科：隆脊叶蝉族）

对亚草叶蝉属进行系统研究并首次报道其在中国分布,共记述5种：E. acarifer (Lethierry),E. hilaris (Melichar),E. magnus Mitjaev,E. medius (Mulsant & Rey) 和E. pratensis Emeljanov,其中E. hilaris (Melichar) 和E. medius (Mulsant & Rey) 为中国新记录种。文中提供了分种检索表和雄性外生殖器特征图,并首次记述和提供雌性生殖器特征。     

Multi‐gene phylogenetic analyses of New Zealand coralline algae: Corallinapetra Novaezelandiae gen. et sp. nov. and recognition of the Hapalidiales ord. nov.

Coralline red algae from the New Zealand region were investigated in a study focused on documenting regional diversity. We present a multi‐gene analysis using sequence data obtained for four genes (nSSU, psaA, psbA, rbcL) from 68 samples. The study revealed cryptic diversity at both genus and species levels, confirming and providing further evidence of problems with current taxonomic concepts in the Corallinophycidae. In addition, a new genus Corallinapetra novaezelandiae gen. et sp. nov. is erected for material from northern New Zealand. Corallinapetra is excluded from all currently recognized families and orders within the Corallinophycidae and thus represents a previously unrecognized lineage within this subclass. We discuss rank in the Corallinophycidae and propose the order Hapalidiales.     

A revision of Malesian Austrobuxus (Picrodendraceae/Euphorbiaceae s.l. subfam. Oldfieldioideae)

The Malesian species of the predominantly New Caledonian genus Austrobuxus were revised. Three species are recognized. Austrobuxus nitidus is widespread from south Thailand to Borneo. Characteristic for this species are the very short papillae of the caruncle. The caruncle papillae are much longer in the other two, newly described species. Austrobuxus celebicus sp. nov. is endemic to Sulawesi, where it is found on ultramafic soils, and A. dentatus sp. nov. is an endemic species of western New Guinea. The former is notable for the very small fruits and the latter for the teeth‐like glands along the leaf blade margins, unique within the genus.     

广西长柱开口箭属(天门冬科)植物小志

该文在野外调查、标本采集、标本查阅与鉴定及文献考证的基础上,订正了广西长柱开口箭属(Tupistra Ker-Gawl.)植物,确定广西目前分布有3种,其中红柱开口箭(Tupistra cardinalis Aver.,N. TanakaSon)为中国新记录植物。同时,还详细描述了红柱开口箭的形态特征,并提供广西产长柱开口箭属植物照片和地理分布信息以及国产长柱开口箭属的分类检索表,以资鉴定。     

Molecular phylogeny of the Korean Rivellia species (Diptera: Tephritoidea: Platystomatidae) based on 16S rDNA sequences: Testing morphological hypotheses using molecular data

The phylogeny of the genus Rivellia Robineau‐Desvoidy was inferred from mitochondrial 16S ribosomal (r)DNA gene sequences of 13 Korean Rivellia species and six species representing other platystomatid genera and the family Tephritidae. We compared the inferred molecular phylogeny with the previously published morphological cladogram. As a result, the following phylogenetic relationships were recognized: (i) monophyly of the genus Rivellia; (ii) monophyly of the R. syngenesiae species group; (iii) R. depicta and R. apicalis (which were not previously placed in any species group) were recognized as a sister group of the R. syngenesiae species group; and (iv) monophyly of the R. basilaris species group was recognized to a limited extent. These results, even though geographically limited, provide a new insight into the phylogeny of the genus Rivellia. They clearly show the utility of 16S rDNA for phylogenetic analysis of the genus Rivellia. Additional study involving samples from different geographical areas will be needed to gain a better understanding of the adaptive radiation of this species‐rich genus.