Variability in the numbers of post-settlement King George whiting (Sillaginidae: Sillaginodes punctata, Cuvier) in relation to predation, habitat complexity and artificial cage structure

The importance of predation by fish in altering abundances of juvenile King George whiting (Sillaginodes punctata) was examined at multiple locations in Port Phillip Bay, Australia, by manipulating the numbers of piscivorous fish in unvegetated sand and seagrass habitats using cages. Additional information regarding the local abundances of, and habitat use by, the most common piscivorous fish, Western Australian salmon (Arripidae: Arripis truttacea, Cuvier), was gathered using netting surveys and underwater video. Regardless of habitat, abundances of S. punctata were similar in partial cages and uncaged areas. In unvegetated sand, S. punctata were more abundant inside cages than partial cages or uncaged areas. In seagrass, there was no difference in the numbers of S. punctata between caging treatments. Patterns in abundances of S. punctata between cage treatments in each habitat were consistent between sites, but the relative difference in the abundances of S. punctata between habitats was site specific. Abundances of A. truttacea varied significantly between sites, and they consumed a variety of epibenthic fishes including atherinids, clupeids, gobiids, syngnathids and pleuronectids. At one site in Port Phillip Bay (Blairgowrie), A. truttacea occurred more commonly in patches of unvegetated sand than seagrass. Over unvegetated sand, abundances of A. truttacea varied little between partial cages and uncaged areas. The numbers of S. punctata varied between caging treatments and habitats in a manner that was consistent with a model whereby seagrass interferes with foraging by predatory fish and provides juvenile fish with a refuge from predation. The almost total absence of A. truttacea in seagrass habitats and the lack of S. punctata in their diets implies, however, that patterns in S. punctata in seagrass/unvegetated sand mosaics are driven by processes other than direct predation.     

Fluorescence imaging application: effect of leaf age on seagrass photokinetics

We used the Imaging-PAM fluorometer to map spatial variability of photosynthesis in three seagrass species, Halophila ovalis, Zostera capricorni and Posidonia australis. Photosynthesis was described by relative photosynthetic rate (PS/50), effective quantum yield (Φ_PSII), non-photochemical quenching (NPQ and qN), electron transport rate (ETR) and leaf absorptivity. Photosynthetic patterns were linked to leaf age and light climate but patterns were not consistent across species. Longitudinal heterogeneity in photosynthesis was apparent along the leaves of all three species while lateral spatial heterogeneity was found only across Z. capricorni and H. ovalis leaves. Age of leaf tissue, determined by longitudinal location on the leaf, strongly influenced photosynthetic activity of Z. capricorni and P. australis. A comparison of H. ovalis leaves of differing maturity demonstrated the influence of leaf age on photosynthetic activity, yet a comparison of Z. capricorni leaves of differing maturity showed no leaf-age effects.Variations in stress-induced changes across a seagrass leaf can be used to identify areas or particular regions of the leaf, which are more susceptible to photodamage. Clear evidence of substantial within-leaf heterogeneity in photosynthetic activity (i.e., a two-fold variation in half saturation constant along a leaf of P. australis) has serious implications for use of small sections of leaf for photosynthetic incubations (such as O₂ or single-point chlorophyll a fluorescence measurements).     

Using experimental ecology to understand stock enhancement: Comparisons of habitat-related predation on wild and hatchery-reared Penaeus plebejus Hess

Marine stock enhancement is often characterized by poor survival of hatchery-reared individuals due to deficiencies in their fitness, such as a diminished capacity to avoid predators. Field experiments were used to examine predation on Penaeus plebejus, a current candidate for stock enhancement in Australia. We compared overall survival of, and rates of predation on, wild P. plebejus juveniles, naïve hatchery-reared juveniles (which represented the state of individuals intended for stock enhancement) and experienced hatchery-reared juveniles (which had been exposed to natural predatory stimuli). Predation was examined in the presence of an ambush predator (Centropogon australis White, 1790) and an active-pursuit predator (Metapenaeus macleayi Haswell) within both complex (artificial macrophyte) and simple (bare sand and mud) habitats. Overall survival was lower and rates of predation were higher in simple habitats compared to complex habitats in the presence of C. australis. However, the three categories of juveniles survived at similar proportions and suffered similar rates of predation within each individual habitat. No differences in survival and rates of predation were detected among habitats or the categories of juveniles when M. macleayi was used as a predator. These results indicate that wild and hatchery-reared P. plebejus juveniles are equally capable of avoiding predators. Furthermore, exposure of hatchery-reared juveniles to wild conditions does not increase their ability to avoid predators, suggesting an innate rather than learned anti-predator response. The lower predation by C. australis in complex habitats was attributed to a reduction in this ambush predator's foraging efficiency due to the presence of structure. Ecological experiments comparing wild and hatchery-reared individuals should precede all stock enhancement programs because they may identify deficits in hatchery-reared animals that could be mitigated to optimize survival. Such studies can also identify weaknesses in wild animals, relative to hatchery-reared individuals, that may lead to the loss of resident populations.     

Linking Seed Photosynthesis and Evolution of the Australian and Mediterranean Seagrass Genus Posidonia

Recent findings have shown that photosynthesis in the skin of the seed of Posidonia oceanica enhances seedling growth. The seagrass genus Posidonia is found only in two distant parts of the world, the Mediterranean Sea and southern Australia. This fact led us to question whether the acquisition of this novel mechanism in the evolution of this seagrass was a pre-adaptation prior to geological isolation of the Mediterranean from Tethys Sea in the Eocene. Photosynthetic activity in seeds of Australian species of Posidonia is still unknown. This study shows oxygen production and respiration rates, and maximum PSII photochemical efficiency (Fv : Fm) in seeds of two Australian Posidonia species (P. australis and P. sinuosa), and compares these with previous results for P. oceanica. Results showed relatively high oxygen production and respiratory rates in all three species but with significant differences among them, suggesting the existence of an adaptive mechanism to compensate for the relatively high oxygen demands of the seeds. In all cases maximal photochemical efficiency of photosystem II rates reached similar values. The existence of photosynthetic activity in the seeds of all three species implicates that it was an ability probably acquired from a common ancestor during the Late Eocene, when this adaptive strategy could have helped Posidonia species to survive in nutrient-poor temperate seas. This study sheds new light on some aspects of the evolution of marine plants and represents an important contribution to global knowledge of the paleogeographic patterns of seagrass distribution.     

Sulfated flavonoids and leaf morphology of the Halophila ovalis—H. minor complex (hydrocharitaceae) in the Pacific Islands and Australia

Sulfated flavonoids showed a systematic pattern among Halophila populations of the Pacific and Australia. Large-leaved plants, typical of H. ovalis (R.Br.) Hook. f., in the Palau Islands (Belau) and in Australia contained sulfated flavonoids, but small-leaved plants that have received various treatments under H. ovalis, including ssp. bullosa (Setchell) den Hartog and ssp. hawaiiana (Doty & Stone) den Hartog, and under H. minor (Zoll.) den Hartog or H. ovata Gaud. in American Samoa, Western Samoa, Tonga, Fiji, Wallis I., New Caledonia, Yap, Guam, Hawaii and Australia lacked sulfated flavonoids. Plants collected in their natural habitats as well as those grown in experimental cultures showed the characteristic patterns of these secondary compounds. Although the large-leaved plants have the potential for producing the largest leaves in the complex, they are not separable from small-leaved plants in leaf dimensions or in number of pairs of cross veins under all environmental conditions. The production of sulfated flavonoids and the potential for greater leaf length are the characteristics that can be used to separate typical H. ovalis and ssp. australis (Doty & Stone) den Hartog from other members of the complex.     

Miniature baited remote underwater video (mini-BRUV) reveals the response of cryptic fishes to seagrass cover

Seagrass habitats worldwide are degrading and becoming fragmented, threatening the important ecosystem services they provide. Fauna associated with seagrasses, particularly cryptic species, are expected to respond to these changes, but are difficult to detect at ecologically meaningful scales using non-extractive techniques. We used a small, wide-angle camera (GoPro) and a small quantity of bait positioned within the canopy of Posidonia australis meadows in Jervis Bay, New South Wales to assess the response of fishes to seagrass cover. We saw a clear positive relationship with the condition of P. australis; a high cover of this seagrass had positive effects on the diversity and abundance of cryptic fauna. Our findings highlight ecosystem shifts associated with the loss and fragmentation of biogenic habitat. These changes are of particular relevance for P. australis meadows given their current status as an endangered ecological community in several locations in NSW and their slow rate of recovery from disturbance.     

Factors influencing the characteristics of fish assemblages in a large subtropical marine embayment

Mean number of species and density of fishes in nearshore shallow waters of Shark Bay, a large subtropical embayment, were c . seven and 19.5 times greater in seagrass than over bare sand, where protection from predators and the abundance of potential invertebrate prey were less. The number of fish species and density of fishes over bare sand were lower in nearshore than offshore waters, where there was a greater amount of organic material and thus presumably a greater density of benthic macroinvertebrate prey. Species composition in vegetated and unvegetated habitats differed markedly, with species such as Monacanthus chinensis, Apogon rueppellii and Pelates quadrilineatus being largely confined to seagrass, whereas others such as Pseudorhombus jenynsii, Torquigener whitleyi and Engyprosopon grandisquama were found predominantly or exclusively over bare sand. The ichthyofauna in beds of Posidonia australis , in which the canopy is uniformly dense, differed in composition and comprised a greater number of species and density of fishes than that in Amphibolis antarctica , in which an open space is present beneath the terminal clusters of relatively short leaves. Species composition in the beds of both of these seagrass species underwent well defined cyclical changes, caused by out-of-phase sequential changes in the densities of certain species. Such changes were less common over bare sand, where the ichthyofaunal composition was more variable. The number of species and density of fishes over bare sand were greater at night than during the day, reflecting, in part, a tendency for species such as A. rueppellii to move into unvegetated areas to feed at night, when the likelihood of predation by visual predators would be reduced. Within Shark Bay, ichthyofaunal composition is influenced most by habitat type (vegetated v . unvegetated), followed in general by water depth and then region in the bay and time of year.     

Magnitude of within-patch variation in seagrass Halophila ovalis growth affected by adjacent Thalassia hemprichii vegetation

Seagrass beds in South-east Asia sometimes consist of a mosaic of different species in monospecific patches. We examined whether the magnitude of within-patch variation in the seagrass Halophila ovalis is affected by the presence or absence of surrounding vegetation consisting of another seagrass species Thalassia hemprichii in an intertidal flat in Thailand waters. We measured biomass and growth rates of H. ovalis at the edges and centers of two different types of patches: (i) H. ovalis patches adjoining T. hemprichii vegetation (HT patches), and (ii) H. ovalis patches adjoining unvegetated sand flats (HS patches). Furthermore, we examined the possible effects of interspecific interactions on the growth of H. ovalis by experimentally removing adjoining T. hemprichii at the edges of HT patches. The biomass of H. ovalis was greater at the patch centre than the patch edge in both types of patches. For the growth rate of H. ovalis, significant interactions were detected between patch types and positions in patches. The difference in growth was significant and more than 4-fold between edges and centers of the HS patches, whereas the growth was not significantly different between edges and centers of the HT patches. The removal of T. hemprichii did not significantly affect the growth rate of H. ovalis at the edge of the HT patches. These findings demonstrate that the magnitude of within-patch variation in H. ovalis growth is affected by the conditions of adjoining habitats. However, any effects of local competition with T. hemprichii on H. ovalis growth were not evident in this short-term manipulative experiment.     

Timing of Recruitment Events, Residence Periods and Post-Settlement Growth of Juvenile Fish in a Seagrass Nursery Area, South-Eastern Australia

We sampled juvenile fish approximately fortnightly using a fine mesh beach seine net to determine the recruitment patterns of Sillago ciliata, Centropogon australis and Girella tricuspidata to seagrass, Zostera capricorni, habitats in Botany Bay, south-eastern Australia. We used trends in the length frequency distributions of juveniles to estimate the timing of recruitment events, rates of post-settlement growth and the residence time of each species in seagrass. We detected discrete pulses of recruitment by each species. The timing of recruitment events by S. ciliata reflected the timing of spawning events. Recruitment by G. tricuspidata reflected lunar or tidal cycles. The factors influencing the timing of recruitment by C. australis were unclear. The growth rate of S. ciliata length cohorts varied and was positively related to estuarine water temperature. The timing of emigration from seagrass of C. australis and G. tricuspidata juveniles appeared to be length-dependant.     

Interactive effects of habitat selection, food supply and predation on recruitment of an estuarine fish

 Seagrass meadows are often important habitats for newly recruited juvenile fishes. Although substantial effort has gone into documenting patterns of association of fishes with attributes of seagrass beds, experimental investigations of why fish use seagrass habitats are rare. We performed two short-term manipulative field experiments to test (1) the effects of food supply on growth and densities of fish, and (2) effects of predation on the density and size distribution of fish recruits, and how this varies among habitat types. Experiments were conducted in Galveston Bay, Texas, and we focused on the common estuarine fish, pinfish Lagodon rhomboides. In the first experiment, replicate artifical seagrass and sand plots were either supplemented with food or left as controls. Recruitment of pinfish was significantly greater to seagrass than sand habitats; however, we detected no effect of food supplementation on the abundance of recruits in either habitat. Pinfish recruits in artifical seagrass grew at a significantly faster rate than those in sand habitats, and fish supplemented with food exhibited a greater growth rate than controls in both sand and artifical grass habitats. In our second experiment, we provided artificial seagrass and sand habitats with and without predator access. Predator access was manipulated with cages, and two-sided cages served as controls. Recruitment was significantly greater to the cage versus cage-control treatment, and this effect did not vary between habitats. In addition, the standard length of pinfish recruits was significantly larger in the predator access than in the predator exclusion treatment, suggesting size-selective predation on smaller settlers or density-dependent growth. Our results indicate that the impact of predation on pinfish recruits is equivalent in both sand and vegetated habitats, and thus differential predation does not explain the higher recruitment of pinfish to vegetated than to nonvegetated habitats. Since predators may disproportionately affect smaller fish, and a limited food resource appears to be more effectively utilized by fish in vegetated than in unvegetated habitats, we hypothesize that pinfish recruits may select vegetated habitats because high growth rates allow them to achieve a size that is relatively safe from predation more quickly. Received: 10 October 1996 / Accepted: 5 April 1997     

Assessing the effect of genetic diversity on the early establishment of the threatened seagrass Posidonia australis using a reciprocal‐transplant experiment

Two common goals for restoration are rapid plant establishment and long‐term plant persistence. The success of transplanted populations may be jeopardized if the donor transplants are not genetically diverse, and/or poorly matched to their new environment. Here, we test the effects of local adaptation and plot‐level genetic diversity on the early establishment phase of a threatened seagrass species, Posidonia australis, by performing a reciprocal transplant experiment across two genetically and geographically distinct populations in southeastern Australia. Posidonia australis is a long‐lived, slow‐growing species that has no seed bank, and the successful transplantation of live shoots and seedlings is the only available restoration method. Our results show a strong effect of local adaptation and genetic diversity on P. australis survivorship and performance over the first 6 months following transplantation. High‐genetic diversity plots displayed higher survival rates and exhibited reduced productivity and increased carbohydrate reserves within the rhizome. This suggests that high‐diversity plots included shoots that were conserving energy stores by actively reducing growth rates during the early stages of transplantation. The lowest diversity plots exhibited high leaf and root productivity and corresponding low carbohydrate reserves. This may be a sign of stress in the low‐diversity transplants, potentially explaining the very low survival rate. We suggest that future restoration efforts source donor transplants from multiple local sources to ensure both local adaptation and sufficient genetic diversity to increase the likelihood of early establishment success.     

Lipid components of the seagrasses Posidonia australis and Heterozostera tasmanica as indicators of carbon source

The component hydrocarbons, sterols, alcohols, monocarboxylic, α, ω-dicarboxylic and ω-hydroxy acids of the seagrasses Posidonia australis and Heterozostera tasmanica and a sample of P. australis detritus are reported. The fresh leaves of P. australis and P. australis detritus are characterized by a distinctive distribution of solvent-extractable long-chain monocarboxylic, α, ω-dicarboxylic and ω-hydroxy acids. This distinctive pattern should enable these lipid components along with other distinctive components to be used as chemical markers of the seagrass P. australis. H. tasmanica is characterized by (1) higher relative concentrations of 16:2ω6 and 16:3ω3 than P. australis, (2) the absence of the distinctive distribution pattern of long-chain monocarboxylic and ω-hydroxy acids observed for P. australis, (3) the absence of α, ω-diacids and (4) a lower absolute concentration of ω-hydroxy acids than P. australis.     

Habitat effects on second-order predation of the seed predator Harpalus rufipes and implications for weed seedbank management

Seed predators provide a valuable ecosystem service to farmers by reducing densities of weed seeds, and, in turn, densities of weed seedlings they must manage. The predominant invertebrate weed seed predator in Maine, USA, agroecosystems is the carabid beetle Harpalus rufipes DeGeer. Pitfall trapping has shown that H. rufipes prefers sites with vegetative cover to fallow sites, preference speculated to be driven by predator avoidance behavior. To test this hypothesis, ‘second-order predation assays’ were developed, in which live H. rufipes prey were presented to second-order predators. Field experiments were conducted to determine foremost if H. rufipes was subject to second-order predation, and secondly, whether (a) vegetative cover affords H. rufipes protection from second-order predators, and (b) high rates of second-order predation correspond with decreased invertebrate seed predation rates. Two 72-h experiments were conducted (mid August and September 2012) at crop and non-crop sites across a 28 ha diversified farm in Stillwater, ME, USA.Second-order predation was 2.8% per day. Based on images from motion-sensing cameras, H. rufipes’ predators included birds and small mammals. Neither a relationship between second-order predation and vegetative treatment, nor an empirical relationship between second-order predation and invertebrate seed predation were detected. However, a simulation model predicted that 2.8% per day second-order predation could increase the number of seeds entering the seedbank by more than 17% annually. Additionally, complex habitats supported higher rates of second-order predation than did simple habitats.     

Seagrass Proliferation Precedes Mortality during Hypo-Salinity Events: A Stress-Induced Morphometric Response

Halophytes, such as seagrasses, predominantly form habitats in coastal and estuarine areas. These habitats can be seasonally exposed to hypo-salinity events during watershed runoff exposing them to dramatic salinity shifts and osmotic shock. The manifestation of this osmotic shock on seagrass morphology and phenology was tested in three Indo-Pacific seagrass species, Halophila ovalis, Halodule uninervis and Zostera muelleri, to hypo-salinity ranging from 3 to 36 PSU at 3 PSU increments for 10 weeks. All three species had broad salinity tolerance but demonstrated a moderate hypo-salinity stress response – analogous to a stress induced morphometric response (SIMR). Shoot proliferation occurred at salinities <30 PSU, with the largest increases, up to 400% increase in shoot density, occurring at the sub-lethal salinities <15 PSU, with the specific salinity associated with peak shoot density being variable among species. Resources were not diverted away from leaf growth or shoot development to support the new shoot production. However, at sub-lethal salinities where shoots proliferated, flowering was severely reduced for H. ovalis, the only species to flower during this experiment, demonstrating a diversion of resources away from sexual reproduction to support the investment in new shoots. This SIMR response preceded mortality, which occurred at 3 PSU for H. ovalis and 6 PSU for H. uninervis, while complete mortality was not reached for Z. muelleri. This is the first study to identify a SIMR in seagrasses, being detectable due to the fine resolution of salinity treatments tested. The detection of SIMR demonstrates the need for caution in interpreting in-situ changes in shoot density as shoot proliferation could be interpreted as a healthy or positive plant response to environmental conditions, when in fact it could signal pre-mortality stress.     

Effect of Planting Unit Size and Sediment Stabilization on Seagrass Transplants in Western Australia

Abstract The effect of increasing planting unit size and stabilizing sediment was examined for two seagrass planting methods at Carnac Island, Western Australia in 1993. The staple method (sprigs) was used to transplant Amphibolis griffithii (J. M. Black) den Hartog and the plug method was used to transplant A. griffithii and Posidonia sinuosa Cambridge and Kuo. Transplant size was varied by increasing the number of rhizomes incorporated into a staple and increasing the diameter of plugs. Planting units were transplanted into bare sand, back into the original donor seagrass bed, or into a meadow of Heterozostera tasmanica, which is an important colonizing species. Sprigs of A. griffithii were extracted from a monospecific meadow; tied into bundles of 1, 2, 5, and 10 rhizomes; and planted into unvegetated areas. Half the units were surrounded by plastic mesh and the remainder were unmeshed. All treatments were lost within 99 days after transplanting, and although larger bundles survived better than smaller ones, no significant differences could be attributed to the effects of mesh or sprig size. Plugs of P. sinuosa and A. griffithii were extracted from monospecific meadows using polyvinyl chloride pipe of three diameters, 5, 10, and 15 cm, and planted into unvegetated areas nearby. Half the units were surrounded by plastic mesh and the remainder were unmeshed. Posidonia sinuosa plugs were also placed within a meadow of H. tasmanica (Martens ex Aschers.) den Hartog. Only 60% of A. griffithii plug sizes survived 350 days after transplanting back into the donor bed; however, survival of transplants at unvegetated areas varied considerably, and analysis of variance indicated a significant two‐way interaction between treatment and plug size. Transplants survived better when meshed (90% survived) and survival improved with increasing plug size. Posidonia sinuosa transplants survived poorly (no plugs survived beyond 220 days in bare or meshed treatments) regardless of size. Survival of 10‐ and 15‐cm plugs was markedly better than the 5‐cm plugs in vegetated areas, including the H. tasmanica meadow. The use of large seagrass plugs may be appropriate for transplantation in high‐energy wave environments.     

Halophila ovalis in the Tropical Atlantic Ocean

A species of seagrass in the genus Halophila was found growing in a shallow lagoon on the west shore of Antigua in the Caribbean West Indies. Genetic analysis showed the plants were Halophila ovalis. In addition, the samples had no genetic deviation (using nrDNA sequences) from Halophila johnsonii, considered to be an endemic and endangered species in Florida, USA. Morphological analysis demonstrated the Antiguan Halophila to be well within the range of plant characteristics previously described in the literature for H. ovalis, except for leaf width and number of seeds per fruit, and again, not different from H. johnsonii and very closely related to H. ovalis from the Indo-Pacific. Ours is the first report of H. ovalis in the Tropical Atlantic bioregion.     

Development of a ‘sediment-stress’ functional-level indicator for the seagrass Halophila ovalis

Understanding mechanistic relationships between seagrass and their environmental stressors should be considered for effective management of estuaries and may inform on why change has occurred. We aimed to develop indicators for seagrass health in response to sediment conditions for the Swan-Canning Estuary, south-west Australia. This article describes the development of a new sediment-stress indicator, relating aspects of seagrass productivity with sediment sulfur dynamics. Sulfur stable isotope ratio and total sulfur were measured monthly within the roots, rhizomes and leaves of Halophila ovalis, and significantly varied across sites and months. The growth of seagrass over the summer months appeared restricted by sediment condition, with growth of seagrass lower when sediment derived sulfur and/or total sulfur within rhizome of leaf tissues was higher. H. ovalis appeared quite tolerant of sulfide intrusion within the root compartment, but growth was compromised when sulfide breached the root–rhizome barrier. The tightest correlation between potential sulfur metrics and seagrass growth was observed for the ratio (δ³⁴S_leaf + 30)/(TS_leaf), and it is this ratio that we propose may be a useful sediment-stress indicator for seagrass. The study also highlights that sediment condition needs to be considered at the meadow scale.     

Increased heavy metal and nutrient contamination does not increase fluctuating asymmetry in the seagrass Halophila ovalis

Fluctuating asymmetry (random differences between symmetric structures, FA) is one of the stress indices used recently to assess a subtle effect of environmental degradation on organisms and is expected to increase under stress conditions. In this study, we developed an original technique of measuring FA in seagrass, Halophila ovalis. We analysed five metric and meristic characters on leaves of the seagrass from a polluted and several control locations in a lagoon in Eastern Australia. The seagrass was sampled from three sites at each location. The analyses revealed significant spatial heterogeneity of samples in fluctuating asymmetry with the highest variability was observed among sites. There was no increase in FA of H. ovalis from polluted location. Possible explanations suggest that whether existing concentrations of heavy metals do not cause developmental stress in seagrass or their effect is compensated or even surpassed by effect of uncontrolled factors.     

Habitat and microsite influence demography of two herbs in intact and degraded scrub

Identifying environmental factors associated with vital rate variation is critical to predict population consequences of environmental perturbation. We used matrix models to explore effects of habitat and microsite on demography of two widespread herbs, Chamaecrista fasciculata (partridge pea) and Balduina angustifolia (yellow buttons). We evaluated models simulating population dynamics in common microsites (shrub, litter, bare sand) within two habitats (intact, degraded Florida scrub) using data on experimental populations initiated by sowing seeds, and natural seed production. Models included four stages (seed bank, small vegetative, large vegetative, reproductive) and three vital rates (survival, growth, fecundity), summarized in sixteen transitions. We conducted life table response experiments to assess contributions of each habitat and microsite to population growth rates. We found that (1) C. fasciculata had greatest population growth in degraded habitat and litter microsites, (2) B. angustifolia had similar population growth between habitats and greatest in bare sand microsites, (3) advancing growth transitions of C. fasciculata had greatest elasticity on population growth in degraded habitat, shrub, and litter, as did seed survival in intact habitat and bare sand, (4) seed survival and advancing growth transitions of B. angustifolia had greatest elasticity on population growth in both habitats, as did seed survival in shrub and litter, and advancing growth in bare sand. Greater population growth of C. fasciculata in degraded scrub is probably explained by release from belowground competition; B. angustifolia may be most affected by competition with shrubs. Microsites in intact scrub were not ecologically equivalent to those in degraded scrub emphasizing that intact scrub is ecologically complex and critical to preserve.     

Molecular characterization of native Australian trypanosomes in quokka (Setonix brachyurus) populations from Western Australia

The quokka, Setonix brachyurus, is a vulnerable, small marsupial endemic to Western Australia. Blood samples were collected from quokkas from three different geographical locations; Two Peoples Bay, Bald Island and Rottnest Island. The overall prevalence of trypanosomes by nested PCR at the 18S ribosomal RNA gene was 57.3% (63/110) with prevalences of 91.4%, 85.3% and 4.9% respectively for Two Peoples Bay, Bald Island and Rottnest Island. Phylogenetic analysis conducted on 47 18S PCR positives identified two Trypanosoma copemani genotypes, with T. copemani genotype B, the most prevalent genotype infecting quokka populations from the three locations with an overall prevalence of 51.8% (24/47) compared to 34% for T. copemani genotype A (16/47). The overall prevalence of mixed T. copemani genotype A and B infections was 14.9% (7/47). Phylogenetic analysis of 26 quokka isolates at the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) locus, largely supported the 18S analysis but identified a mixed infection in one quokka isolate (Q4112-4117 from Two Peoples Bay). T. copemani genotype B has previously only been isolated from quokkas and the Gilbert's potoroo whereas T. copemani genotype A has a wide host range and may be pathogenic. Further work is required to determine the clinical impact of T. copemani on marsupial populations.