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1.
The phylogenetic position of Koliella , a chlorophyte characterized by Klebsormidium type cell division, was inferred from analyses of partial 18S rDNA and partial 16S rDNA. Parsimony and distance analyses of separate and combined data sets indicated that the members of Koliella belonged to Trebouxiophyceae, and high decay indices and bootstrap values supported this affinity. However, the genus appeared to be polyphyletic. Koliella spiculiformis , the nomenclatural type of the genus, was allied with Nannochloris eucaryota and the "true" chlorellas ( Chlorella vulgaris , C. lobophora , C. sorokiniana , and C. kessleri ). The close relatives of Koliella longiseta (≡ Raphidonema longiseta ) and Koliella sempervirens appeared to be Stichococcus bacillaris and some species traditionally classified in Chlorella that were characterized by the production of secondary carotenoids under nitrogen-deficient conditions. This clade was also supported by the presence of a relatively phylogenetically stable group I intron (1506) in the 18S rRNA gene. Because of the presence of Klebsormidium type cell division, some authors regarded the members of Koliella as closely related to charophytes. Molecular analyses, however, did not confirm this affinity and suggested that a Klebsormidium type cell division is homoplastic in green plants.  相似文献   

2.
基于78种直翅目昆虫的18S rRNA基因全序列构建了直翅目各主要类群间的系统发育关系。本研究的结果支持直翅目的单系性,但不支持蝗亚目和螽亚目各自的单系性;直翅目下除蜢总科和蝗总科外各总科的划分多数与Otte系统相一致;蜢总科的单系性得不到支持;蝗总科的剑角蝗科、斑腿蝗科、斑翅蝗科、网翅蝗科和槌角蝗科5科均不是单系群,各物种间的遗传距离差异不大,应合并为一科,即蝗科;本研究支持将Otte系统中蚱总科和螽蟖总科下各亚科级阶元提升为科级阶元;18S rRNA基因全序列可以作为划分科级阶元的工具,当位于同一分支上互成姐妹群的类群间的遗传距离超过1%时,这几个类群属于不同的科;但由于其在进化上的保守性,18S rRNA基因只能用于纲目等高级阶元间关系的研究,而由其获得的总科以下阶元间的关系并不可靠。  相似文献   

3.
The complete 18S rRNA gene sequences of three Oocystis A. Braun species (Oocystaceae) and three other chlorococcal algae, Tetrachlorella alternans (G. M. Smith) Korš. (Scenedesmaceae), Makinoella tosaensis Okada (Scenedesmaceae), and Amphikrikos cf. nanus (Fott & Heynig) Hind. (Chlorellaceae) were determined and subjected to four different phylogenetic analysis algorithms. Independent of the reconstruction method, these taxa clustered together as a monophyletic group (Oocystaceae) within the Trebouxiophyceae. This result was supported by high bootstrap values. A comparison of morphological data with the phylogenetic reconstructions indicated that the evolution of Oocystaceae was accompanied by a reduction in the number of plastids. This study fully supports the taxonomic assignment of the Oocystaceae as a distinct family. The diacritic criterion that the cell walls are composed of several cellulose layers with perpendicular fibril orientations is in accordance with the molecular data.  相似文献   

4.
晶杯菌科的分类目前主要基于子囊盘外囊盘被表面毛状物的形态学特征,在系统演化关系上十分不清楚。本研究利用18SrRNA基因核苷酸序列分析方法探讨该科粒毛盘菌属及其相关属间的系统发育关系。以Saccharomycescerevisiae为外群的严格合意树和最简约树表明,粒毛盘菌属与其相关的属形成三个分支。Lachnumhyalopus,L.nudipes和L.virgineum代表一个分支。L.brasiliense,L.sclerotii,L.singerianum,Albotrichaguangxiensis,Calycellinapopulina.,Cistellagrevillei,Hyaloscyphaaureliella,Lachnellulacalyciformis,Parachnopezizaguangxiensis和Trichopezizasulphurea聚在一起(支持率为57%),为另一个分支。上述两个姊妹分支的支持强度为76%。与Lachnum在形态上有些相似的Cistella和Lachnum聚在一起的支持强度为51%。传统上纳入Arachnopezizoideae的Parachnopeziza与该亚科的模式属Arachnopeziza的关系较远。Arachnopezizaaurata是供试的14个种中距离最远的一个,位于系统发育树的最外侧,与上述两个分支的亲缘关系较远,这对Arachnopezizoideae在晶杯菌科中的地位提出了质疑。  相似文献   

5.
The sequence data from the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase ( rbc L) gene and 18S ribosomal DNA (small subunit) of taxa in the freshwater rhodophyte order Batrachospermales were used to construct phylogenetic hypotheses. Taxa examined in this study represent four families, eight genera, and six sections of the genus Batrachospermum . In addition, Rhododraparnaldia oregonica Sheath, Whittick et Cole, was included in the analysis because it shares particular ultrastructural, reproductive, and morphological characteristics with members of the Batrachospermales and Acrochaetiales. The trees generated from each gene, as well as a combined data set, were largely congruent. Rhododraparnaldia consistently occurs on an early branch within the Acrochaetiales – Palmariales clade and does not appear to be a member of the Batrachospermales. In addition, Thorea violacea Bory de St. Vincent was not closely related to the other taxa of the Batrachospermales in all trees and hence the family Thoreaceae does not appear to be a natural grouping within this order. All other taxa analyzed, which are presently classified within this order, formed a monophyletic clade in most analyses. Psilosiphon scoparium Entwisle was not closely allied with the taxa of the Lemaneaceae, lending support to the newly proposed family Psilosiphonaceae. Sequence data from the remaining taxa of the Lemaneaceae support the concept of a derived monophyletic clade. The genus Batrachospermum appears to comprise many morphologically similar but distantly related taxa, which will need further investigation to resolve their taxonomic status. Tuomeya, Sirodotia and Nothocladus are retained at the generic level until further data are obtained.  相似文献   

6.
We newly sequenced the nuclear-encoded small subunit (SSU) rDNA coding region for 21 taxa of the genus Closterium. The new sequences were integrated into an alignment with 13 known sequences of conjugating green algae representing six traditional families (i.e. Zygnemataceae, Mesotaeniaceae, Gonatozygaceae, Peniaceae, Closteriaceae, and Desmidiaceae) and five known charophycean sequences as outgroups. Both maximum likelihood and maximum parsimony analyses supported with high bootstrap values one large clade containing all placoderm desmids (Desmidiales). All the Closterium taxa formed one clade with 100% bootstrap support, indicating their monophyly, but not paraphyly, as suggested earlier. As to the taxa within the genus Closterium , we found two clades of morphologically closely related taxa in both maximum likelihood and maximum parsimony trees. They corresponded to the C. calosporum species complex and the C. moniliferum-ehrenbergii species complex. It is of particular interest that the homothallic entity of C. moniliferum v. moniliferum was distinguished from and ancestral to all other entities of the C. moniliferum-ehrenbergii species complex. Superimposing all 50 charophycean sequences on the higher order SSU rRNA structure model of Closterium , we investigated degrees of nucleotide conservation at a given position in the nucleotide sequence. A characteristic "signature" structure to the genus Closterium was found as an additional helix at the tip of V1 region. In addition, eight base deletions at the tip of helix 10 were found to be characteristic of the C. calosporum species complex, C. gracile , C. incurvum , C. pleurodermatum , and C. pusillum v. maius. These taxa formed one clade with an 82% bootstrap value in maximum parsimony analysis.  相似文献   

7.
8.
Complete sequences of the Rrn 18 genes were obtained from 13 strains of the nonphotosynthetic algal genus Polytoma. Phylogenetic analyses showed that these strains formed two clades. One clade shows only modest sequence diversity but is represented by strains collected at widely dispersed sites in Europe and America. The other clade consists of a single isolate from the Canary Islands. Both clades lie well within the extended clade that includes all species of Chlamydomonas for which sequence data are available. The two Polytoma clades are separated from each other by several green species, suggesting that the extant nonphotosynthetic Chlamydomonadaceae arose from photosynthetic ancestors at least twice. These results suggest that nonphotosynthetic mutants are capable of establishing lineages that can spread widely but have a higher probability of extinction than their photosynthetic congeners.  相似文献   

9.
伪指环虫、异钩虫和三钩虫的系统位置   总被引:4,自引:1,他引:3  
采用单个虫体PCR扩增、序列测定与分析的方法,对锚首虫科中后吸器形态较特殊的3个属:伪指环虫属、异钩虫属和三钩虫属的28S rRNA基因5'端序列进行了研究,并采用PAUP软件构建了分子系统树.结果显示,异钩虫属、三钩虫属和伪指环虫属明显地嵌合于其他锚首虫属之间,进而明确了这3个属的分类地位,应归属锚首虫科.锚首虫科和指环虫科之间的关系则有待今后进一步研究.  相似文献   

10.
Ultrastructural and molecular sequence data were used to assess the phylogenetic position of the coccoid green alga deposited in the culture collection of the University of Texas at Austin under the name of Neochloris sp. (1445). This alga has uninucleate vegetative cells and a parietal chloroplast with pyrenoids; it reproduces by forming naked biflagellate zoospores. Electron microscopy revealed that zoospores have basal bodies displaced in the counterclockwise absolute orientation and overlapped at their proximal ends. Four microtubular rootlets numbering 2 and 2/1 are alternatively arranged in a cruciate pattern. A system I fiber extends beneath each d rootlet and a system II fiber (rhizoplast) originates from each basal body and extends peripherally along each d rootlet. These features differ substantially from those of the three genera, Ettlia (Komárek) Deason et al., Neochloris (Starr) Deason et al., and Parietochloris Watanabe et Floyd, all of which were previously accommodated in the single genus Neochloris Starr. Sequence data from the nuclear small subunit ribosomal RNA gene were obtained and compared with published green algal sequences. Results from the ultrastructural and sequence data support the placement of Neochloris sp. (The Culture Collection of Algae at the University of Texas at Austin [UTEX] no. 1445) in the Ulvophyceae. This isolate is described as Pseudoneochloris marina , gen. et sp. nov. in the Ulotrichales, Ulvophyceae.  相似文献   

11.
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12.
对隶属于3亚目、5次目、20科、23属共25个种类的唇口目(裸唇纲)苔藓虫18S rRNA基因部分序列进行了序列测定.结合从GenBank中获得的该类群其它7个种类的18S rRNA基因同源序列,以序列分析软件对其序列组成和变异进行了比较分析;同时,以羽苔虫(被唇纲)和管孔苔虫(窄唇纲)为外类群,以邻接法和最大简约法重建了它们的系统发生树,分析了该目主要类群系统发生关系.序列分析结果显示:经比对后序列长度为884 bp,其中保守位点241个,可变位点643个,简约信息位点357个;A,T,C和G 4碱基平均含量分别为23.8%、22.8%、24.4%和28.9%.分子系统树表明:本研究所有有囊类构成1个单系群,其中檐胞次目的几种苔虫位于皮壳次目内部;无囊类形成1个多系群,其中的亚目级(新唇口亚目)和次目级分类阶元(枝室次目、假软壁次目和隐壁次目)也都为多系发生,这些结果与前人的分子系统学研究结果大体一致,而与传统的形态分类体系间存在明显的冲突.  相似文献   

13.
Nuclear-encoded small-subunit (18S) ribosomal RNA genes of Chara australis R. Brown (C. corallina var. nobilis f. nobilis R.D.W.) and Nitella flexilis (L.) Ag. were amplified by polymerase chain reaction, cloned, and completely sequenced. Using structural criteria, the sequences were aligned with 18S ribosomal DNAs (rDNAs) from 11 other chlorophyll b-containing algae and six higher plants (embryophytes). Phylogenetic trees were inferred by distance, neighbor-joining, parsimony, and maximum-likelihood approaches; confidence intervals were estimated by bootstrapping, and nonrandomness of tree structure was confirmed by permutation tests. 18S rDNAs of C. australis and two Nitella species were found to be specifically related and, together with 18S rDNAs of Chlorokybus atmophyticus Geitler, Klebsormidium flaccidum (A. Br.) Silva, Mattox, et Blackwell, and two Coleochaete species, support a robust monophyletic group (Charophyceae). Although most trees favored a specific sister-group relationship between Charophyceae and embryophytes, statistical tests revealed that a sister-group relationship between Charophyceae and Chlorophyceae could not be ruled out. Additional complete sequences from 18S rDNAs of lower land plants may be required to resolve phylogenetic relationships among these organisms.  相似文献   

14.
从18S rDNA序列初探散胞盘菌亚科属间亲缘关系   总被引:1,自引:1,他引:0  
散胞盘菌亚科Encoelioideae建于1932年,为盘菌纲Discomycetes锤舌菌目Leotiales锤舌菌科(广义)Leotiaceae的成员,它包括腐生、植物寄生、真菌上生的盘状子囊菌,现含18属,其中若干为单种属。传统分类从形态学角度将外囊盘表层细胞松散结合或者表面覆盖短的菌丝延伸物视为此亚科的主要特征,宏观上,其成员的共性表现为外囊盘被表面糠皮状、鳞屑状或霜状。迄今,学者们从未对散孢盘菌亚科这一性状是否反映属间亲缘关系进行过任何探讨,国际基因库中亦无此亚科的可利用序列。为了探明此性状在系统演化过程中的作用以及散胞盘菌亚科的属间亲缘关系,我们对此亚科中绿散胞盘菌Chlorencoelia、复柄盘菌属Cordierites、散胞盘菌属Encoelia、霍氏盘菌属Holwaya、拟爪毛盘菌属 Unguiculariopsis、以及丝绒盘菌属Velutarina代表种的18SrDNA片段进行了序列测定,受实验材料所限,每属只获得了一个种的18SrDNA序列。为了分析和比较,还对同一科内锤舌菌亚科Leotioideae中绿杯菌属Chlorociboria一个种的相关序列进行了测定。在构建系统树的过程中,核盘菌科的核盘菌Sclerotiniasclerotiorum被选为外群;从基因库中调入属于同一个目的地舌菌科和锤舌菌亚科几个属的代表即胶鼓菌属Bulgaria、锤舌菌属Leotia、小舌菌属Microglossum、新胶鼓菌属Neobulgaria和地勺菌属Spathularia的序列;利用ClustalW和TreeView软件,构建出Neighbour-joining系统进化树。初步的研究结果表明,散孢盘菌亚科不是单源的,该亚科的成员与其他亚科或者其他科的物种一起形成四个系统演化分支。散胞盘菌亚科的Holwaya与另一亚科的Bulgaria(Leotiaceae,Leotioideae)聚在一起,具有95%的序列相似性和97.4%支持率(bootstrapvalue);此二属与Leotia(Leotiaceae,Leotioideae)和Microglossum(Geoglossaceae)组成姐妹群。散胞盘菌亚科Cordierites和Encoelia接近,支持率为93.6%;它们是Leotioideae中Chlorociboria和Neobulgaria两属的姐妹群。散胞盘菌亚科的Unguiculariopsis与Velutarina在一起,独立成为一个分支,支持率高达99.3%。Chlorencoelia与本研究所涉及的散胞盘菌亚科其他成员的关系都比较远。以上研究结果表明,散胞盘菌亚科很可能是多源的;但是,由于该亚科大多数属缺乏分子生物学证据,本研究结果只能作为推断。  相似文献   

15.
从18SrDNA序列初探散胞盘菌亚科属间亲缘关系   总被引:1,自引:0,他引:1  
散胞盘菌亚科Encoelioideae建于1932年,为盘菌纲Discomycetes锤舌菌目Leotiales锤舌菌科(广义)Leotiaceae的成员,它包括腐生、植物寄生、真菌上生的盘状子囊菌,现含18属,其中若干为单种属。传统分类从形态学角度将外囊盘表层细胞松散结合或者表面覆盖短的菌丝延伸物视为此亚科的主要特征,宏观上,其成员的共性表现为外囊盘被表面糠皮状、鳞屑状或霜状。迄今,学者们从未对散孢盘菌亚科这一性状是否反映属间亲缘关系进行过任何探讨,国际基因库中亦无此亚科的可利用序列。为了探明此性状在系统演化过程中的作用以及散胞盘菌亚科的属间亲缘关系,我们对此亚科中绿散胞盘菌Chlorencoelia、复柄盘菌属Cordierites、散胞盘菌属Encoelia、霍氏盘菌属Holwaya、拟爪毛盘菌属Unguiculariopsis、 以及丝绒盘菌属Velutarina代表种的18S rDNA片段进行了序列测定,受实验材料所限,每属只获得了一个种的18S rDNA序列。为了分析和比较,还对同一科内锤舌菌亚科Leotioideae中绿杯菌属Chlorociboria一个种的相关序列进行了测定。在构建系统树的过程中,核盘菌科的核盘菌Sclerotinia sclerotiorum被选为外群;从基因库中调入属于同一个目的地舌菌科和锤舌菌亚科几个属的代表即胶鼓菌属Bulgaria、锤舌菌属Leotia、?  相似文献   

16.
Phylogenetic relationships were inferred from parsimony and distance analyses of nuclear small-subunit ribosomal DNA sequences taken from 14 species representing 8 of the 11 extant genera in the Dasycladales. Of 1733 aligned positions, 412 (23.8%) were variable and 251 (61%) of those were phylogenetically informative within the Dasycladales. Secondary structure was analyzed and taken into account during all phases of data analysis. Robustness of the trees was assessed using bootstrap analysis and g1 statistics of tree-length decay. Strongly supported branches were robust to all methods of analysis regardless of weighting schemes used. The secondary structure of the 18S within the Dasycladales agrees with that of other green algae with the exception of a shared deletion in stemloop E10-1 (ca. 13 nucleotides long), which provides additional support for the uniqueness of this monophyletic group. A molecular clock was calibrated from the dasyclad fossil record and suggests a radiation of the Acetabulariaceae at 120 ± 30 million years (Ma) ago and the Dasycladaceae 215 ± 40 Ma ago. The split of the two lineages from a shared ancestor is estimated at 265 ± 50 Ma ago. Within the Dasycladaceae, Neomeris and Cymopolia are sister taxa, as are Batophora and Chlorocladus. Bornetella groups with the Neomeris and Cymopolia clade in 78% of the bootstrap replicates. Relationships among the Acetabulariaceae show that Acetabularia and Polyphysa do not form monophyletic groups as presently circumscribed. No evidence indicates that Acicularia is the oldest genus. Halicoryne, Chalmasia, and Dasycladus were not included in the analysis. Molecular data provide afresh background perspective from which to discuss the evolution of one of the most ancient lineages of green plants.  相似文献   

17.
The chloroplast-encoded large subunit of the ribulose-1, 5-bisphosphate carboxylase / oxygenase (rbcL) gene was sequenced from 20 species of the colonial Volvocales (the Volvacaceae, Goniaceae, and Tetrabaenaceae) in order to elucidate phylogenetic relationships within the colonial Volvocales. Eleven hundred twenty-eight base pairs in the coding regions of the (rbcL) gene were analyzed by the neighbor-joining (NJ) method using three kinds of distance estimations, as well as by the maximum parsimony (MP) method. A large group comprising all the anisogamous and oogamous volvocacean species was resolved in the MP tree as well as in the NJ trees based on overall and synonymous substitutions. In all the trees constructed, Basichlamys and Tetrabaena (Tetrabaenaceae) constituted a very robust phylogenetic group. Although not supported by high bootstrap values, the MP tree and the NJ tree based on nonsynonymous substitutions indicated that the Tetrabaenaceae is the sister group to the large group comprising the Volvocaceae and the Goniaceae. In addition, the present analysis strongly suggested that Pandorina and Astrephomene are monophyletic genera whereas Eudorina is nonmonophyletic. These results are essentially consistent with the results of the recent cladistic analyses of morphological data. However, the monophyly of the Volvocaceae previously supported by four morphological synapomorphies is found only in the NJ tree based on nonsynonymous substitutions (with very low bootstrap values). The genus Volvox was clearly resolved as a polyphyletic group with V. rousseletii Pocock separated from other species of Volvox in the rbcL gene comparisons, although this genus represents a monophyletic group in the previous morphological analyses. Furthermore, none of the rbcL gene trees supported the monophyly of the Goniaceae; Astrephomene was placed in various phylogenetic positions .  相似文献   

18.
The chloroplast-encoded atp B gene was sequenced from 33 strains representing 28 species of the colonial Volvocales (the Volvocaceae and its relatives) to reexamine phylogenetic relationships as previously deduced by morphological data and rbc L gene sequence data.1128 base pairs in the coding regions of the atp B gene were analyzed by MP, NJ, and ML analyses. Although supported with relatively low bootstrap values (75% and 65% in the NJ and ML analyses, respectively), three anisogamous/oogamous volvocacean genera— Eudorina, Pleodorina, and Volvox, excluding the section Volvox (= Euvolvox, illegitimate name), constituted a large monophyletic group (Eudorina group). Outside the Eudorina group, a robust lineage composed of three species of Volvox sect. Volvox was resolved as in the rbc L gene trees, rejecting the hypothesis of the previous cladistic analysis based on morphological data that the genus Volvox is monophyletic. In addition, the NJ and ML trees suggested that Eudorina is a nonmonophyletic genus as inferred from the morphological data and rbc L gene sequences. Although phylogenetic status of the genus Gonium is ambiguous in the rbc L gene trees and the paraphyly of this genus is resolved in the cladistic analysis based on morphological data, the atp B gene sequence data suggest monophyly of Gonium with relatively low bootstrap values (56–61%) in the NJ and ML trees. On the basis of the combined sequence data (2256 base pairs) from atp B and rbc L genes, Gonium was resolved as a robust monophyletic genus in the NJ and ML trees (with 68–86% bootstrap values), and Eudorina elegans Ehrenberg represented a paraphyletic species positioned most basally within the Eudorina group. However, phylogenetic status and relationships of the families of the colonial Volvocales were still almost ambiguous even in the combined analysis.  相似文献   

19.
首次利用核糖体28S rDNA C1-D2区序列对鳞盘虫科开展初步的系统学分析,探讨鳞盘虫科各亚科是否成立及其相互关系,并考察鳞盘虫属的单系性问题.结果表明:1)寄生在黄姑鱼Nibea albiflora上的Sinodiplectanotrema属虫种与鳞盘虫科虫种表现出较近的亲缘关系,因虫种后吸器不具鳞盘,故应纳入鳞盘虫科4亚科之一的Murraytrematoidinae亚科;2)本研究不支持Murraytrematoidinae亚科的单系性,并支持Doumingous(2004)废除Murraytrematoidinae亚科并将其中的Lobotrema和Murraytrema二属归入Diplectaninae亚科这一做法;3)对于Doumingous(2004)所提议的新Diplectaninae亚科是否为单系群需进一步探讨;4)本研究支持Lamellodiscinae亚科的单系性;5)7种鳞盘虫属虫种的分析结果显示鳞盘虫属具有明显的非单系性.今后需要将形态学分析和分子系统学分析结合起来,通过分析更多的虫种,才有可能理解鳞盘虫属及鳞盘虫科其它种类的适应辐射问题.  相似文献   

20.
Forty-seven species of desmids, representing all four families, were examined for the presence of the xanthophyll loroxanthin by reverse-phase high-performance liquid chromatography. In the Desmidiaceae 28 of the 35 species examined possessed loroxanthin, and in the Mesotaeniaceae two of the six examined had loroxanthin present. All six species of the families Peniaceae and Closteriaceae examined possessed loroxanthin. Although the distribution of loroxanthin appears to be disjunct in the desmids and does not have strict taxonomic significance, it does follow a coherent pattern consistent with current ideas on desmid phylogeny. This pattern suggests that loroxanthin synthesis probably evolved once in the desmid lineage, with one or more subsequent reversals.  相似文献   

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