Species numbers,area, and habitat diversity on the habitat-islands of Mizorogaike pond,Japan

Species-area relationships of flowering plants were analyzed on the habitat-islands (hummocks on a floating bog) of Mizorogaike Pond, Japan. Three habitat units (Sphagnum cuspidatum unit,Sphagnum palustre unit, and fallen leaves unit) in which habitat conditions were homogeneous and a group of habitat-specific species occurred were recognized on the hummocks. Six hummock types were determined according to various combinations of the three habitat units. The most fundamental species-area relationships in which size itself affects the number of species were shown by hummocks with only one habitat unit. The species-area relationships for hummocks with two or three habitat units included the effects of habitat diversity in addition to size. The speciesarea curve for all hummocks was an average of these relationships. It is concluded that area in species-area relationships affects species numbers in two ways: number of habitat units and size of each habitat unit.     

Purification,crystallization, and preliminary X-ray studies of 10-formyltetrahydrofolate synthetase from Clostridia acidici-urici

The monofunctional enzyme 10-formyltetrahydrofolate synthetase (THFS), which is responsible for the recruitment of single carbon units from the formate pool into a variety of folate-dependent biosynthetic pathways, has been subcloned, purified, and crystallized. The crystals belong to space group P2₁, with unit cell dimensions a= 102.4 Å b= 116.5 Å c= 115.8 Å and β = 103.5 Å. The crystal unit cell and diffraction is consistent with an asymmetric unit consisting of the enzyme tetramer, and a specific volume of the unit cell of 2.7 Å₃/Da. The crystals diffract to at least 2.3 Å resolution after flash-cooling, when using a rotating anode x-ray source and an RAXIS image plate detector. © 1997 Wiley-Liss, Inc.     

Purification,characterization, crystallization,and preliminary X-ray results from Paracoccus denitrificans porin

The porin from Paracoccus denitrificans ATCC 13543 was purified and crystallized. Two crystal forms were obtained from porin solutions with β-d-octylglucopyra-noside as detergent. Crystals of form I belong to the monoclinic spacegroup C2 with unit cell dimensions a = 112.2 Å, b = 193.8 Å, c = 100.5 Å and β = 129.2°. There is 1 trimer per asymmetric unit. Crystals of form II are triclinic with α = 89.7 Å, b = 98.8 Å, c = 112.5 Å, b = 112.5Å, β = 101.8°, γ = 106.7° (2 trimers per asymmetric unit). Both crystal forms diffract to 3 Å. © 1995 Wiley-Liss, Inc.     

Functional consequences of stenophylly for leaf productivity: comparison of the anatomy and physiology of a rheophyte, Farfugium japonicum var. luchuence, and a related non-rheophyte, F. japonicum (Asteraceae)

We investigated the anatomical and physiological characteristics of stenophyllous leaves of a rheophyte, Farfugium japonicum var. luchuence, and sun and shade leaves of a non-rheophyte, F. japonicum, comparing three different populations from coastal, forest floor, and riparian habitats. Light adaptation resulted in smaller leaves, and riparian adaptation resulted in narrower leaves (stenophylly). The light-saturated rate of photosynthesis (P _max) per unit leaf area corresponded to the light availability of the habitat. Irrespective of leaf size, the P _max per unit leaf mass was similar for sun and shade leaves. However, the P _max per mass of stenophyllous leaves was significantly lower than that of sun and shade leaves. This was because the number and size of mesophyll cells were greater than that required for intercellular CO₂ diffusion, which resulted in a larger leaf mass per unit leaf area. Higher cell density increases contact between mesophyll cells and enhances leaf toughness. Stenophyllous leaves of the rheophyte are frequently exposed to a strong water flow when the water level rises, suggesting a mechanical constraint caused by physical stress.     

Effect of nitrogen supply on growth,allocation and gas exchange characteristics of two perennial grasses from inland dunes

Summary We studied the effects of nitrogen supply on growth, allocation, and gas exchange characteristics of two perennial grasses of dry, nutrient-poor inland dunes: Corynephorus canescens (L.) Beauv. and Agrostis vinealis Schreber. C. canescens invests more biomass in leaves and less in roots, but has less leaf area and more root length per unit plant weight than A. vinealis. A. vinealis invests more nitrogen per unit leaf weight, but less per unit leaf area, despite a similar relative nitrogen investment in leaves and plant nitrogen concentration. Between-species differences in the rate of net photosynthesis, transpiration and shoot respiration are positively related to leaf nitrogen content per unit leaf area. The rate of net photosynthesis per unit plant weight is higher for A. vinealis at both levels of nitrogen supply, due to differences in leaf area ratio (LAR), and despite the reverse differences in the rate of net photosynthesis per unit leaf area. The water use efficiency of the two species is similar and increases significantly with an increase in nitrogen supply. The photosynthetic nitrogen use efficiency on the other hand is not affected by nitrogen supply, while at both low and high nitrogen supply A. vinealis has a 10% higher photosynthetic nitrogen use efficiency than C. canescens.     

Expression,purification, crystallization,and preliminary X-Ray diffraction analysis of the homodimeric bacterial hemoglobin from Vitreoscilla stercoraria

The recombinant homodimeric hemoglobin from the strictly aerobe gram-negative bacterium Vitreoscilla stercoraria has been expressed in Escherichia coli, purified to homogeneity, and crystallized by vapor diffusion techniques, using ammonium sulfate as precipitant. The crystals belong to the monoclinic space group P2₁ and diffract to HIGH resolution. The unit cell parameters are a = 62.9, b = 42.5, c = 63.2 Å, β = 106.6°; the asymmetric unit contains the homodimeric hemoglobin, with a volume solvent content of 42%. Proteins 27:154–156 © 1997 Wiley-Liss, Inc.     

O-Acetyl location on cepacian, the principal exopolysaccharide of Burkholderia cepacia complex bacteria

Cepacian is an exopolysaccharide produced by the majority of the isolates belonging to the Burkholderia cepacia complex bacteria, a group of 17 species, some of which infect cystic fibrosis patients, sometime with fatal outcome. The repeating unit of cepacian consists of a backbone having a trisaccharidic repeating unit with three side chains, as reported in the formula below. The exopolysaccharide is also acetylated, carrying from one to three acetyl esters per repeating unit, depending on the strain examined. The consequences of O-acetyl substitution in a polysaccharide are important both for its biological functions and for industrial applications, including the preparation of conjugated vaccines, since O-acetyl groups are important immunogenic determinants. The location of acetyl groups was achieved by NMR spectroscopy and ESI mass spectrometry and revealed that these substituents are scattered in non-stoichiometric ratio on many sugar residues in different positions, a feature which adds to the already unique carbohydrate structure of the polysaccharide.     

Purification,crystallization, and preliminary X-ray studies of a bifunctional 5,10-methenyl/methylene tetrahydrofolate cyclohydrolase/dehydrogenase from Escherichia coli

A bifunctional enzyme that catalyzes the conversion of formyltetrahydrofolate to methylene-tetrahydrofolate (5,10-methenyltetrahydrofolate cyclohydrolase and 5,10-methylene tetrahydrofolate dehydrogenease), has been subcloned from a cDNA library, purified to homogeneity, and crystallized. The crystals belong to space group I222, with unit cell dimensions of a= 64.5 Å b= 84.9 Å c= 146.1 Å. The crystal unit cell and diffraction is consistent with an asymmetric unit consisting of the enzyme monomer, and a specific volume of the unit cell of 3.2 ų/Da. The crystals diffract to at least 2.8 Å resolution after flash-cooling, when using a rotating anode x-ray source and an RAXIS image plate detector. A 2.56 Å resolution native data set has been collected at beamline X12-C at the NSLS. © 1997 Wiley-Liss, Inc.     

Inflorescence characteristics,seed composition,and allometric relationships predicting seed yields in the biomass crop Cynara cardunculus

Cynara (Cynara cardunculus) is a perennial C₃ herb that has its potential as bioenergy crop. This paper aims (a) to derive empirical relationships to predict cynara seed yield per head and per unit area, avoiding laborious extraction of seeds from the complex structure of its inflorescences; (b) to determine the head‐weight distribution per unit area, the seed composition and the oil profile of cynara seeds; and (c) to estimate the range of cynara biomass, seed and oil yield in representative parts of Greece. We analyzed 16 field experiments, varying in crop age and environmental conditions in Greece. Seed yield per head (SY_head) can be accurately predicted as a linear function of dry head weight (H_w): SY_head=0.429·H_w?2.9 (r²=0.96; n=617). Based on this relationship, we developed a simple two‐parameter equation to predict seed yield per unit area (SY): SY=HN·(0.429·μ?2.9), where μ is the mean head weight (g head^?1) and HN is the total number of heads per unit area, respectively. The models were tested against current and published data (n=180 for head‐level; n=35 for unit area‐level models), and proved to be valid under diverse management and environmental conditions. Attainable cynara seed yields ranged from 190 to 480 g m^?2 yr^?1, on dry soils and on aquic soils (shallow ground water level). This variation in seed yield was sufficiently explained by the analyses of head‐weight distribution per unit area (small, medium and large heads) and variability of seed/head weight ratio at head level. Seed oil concentration (average: 23%) and crude protein concentration (average: 18.7%) were rather invariant across different seed sizes (range: 26–56 mg seed^?1) and growing environments.     

VARIATION IN THE NUTRIENT CONTENT OF LEAVES OF QUERCUS ALBA,QUERCUS COCCINEA,AND PINUS RIGIDA IN THE BROOKHAVEN FOREST FROM BUD-BREAK TO ABSCISSION

Leaves of Quercus coccinea, Q. alba, and Pinus rigida were collected at six dates during the growing season and analyzed for N, P, K, Ca, Mg, Fe, S, and Na. Leaf weights per unit of leaf area (or length) were determined for the same period. Quercus coccinea and Q. alba leaves increased in weight per unit area by about 30 % and 50 %, respectively. First-year pine leaves increased in weight per unit length by about 65 %. During the second year the weight of pine leaves changed little. Two broad patterns in the nutrient content of leaves were apparent when nutrient content was expressed on the basis of leaf area rather than leaf weight. N, P, and K concentrations increased to a peak in mid- or late summer and declined abruptly just prior to abscission. Concentrations of other elements tended to rise slowly throughout the life of the leaves in all three species. The differences among nutrients and among species support the hypothesis that differential partitioning of the nutrient pool occurs as a result of evolutionary adaptation. The changes in weight of leaves per unit area and in nutrient content during the growing season are important for studies of net primary production and in appraisals of the cycling of nutrients. Least distortion of nutrient relationships occurs when area or length of leaf is used as the basis for expression of nutrient content.     

Formation of Dendrolasin,Sesquirosefuran, Perillene and Rosefuran by Biomimetic Autooxidation

To estimate the steric distance between the bitter taste determinant sites in peptides, some cyclic dipeptides, amino acid anilides, amino acid cyclohexylamides, and benzoyl amino acids were synthesized and their tastes were evaluated. The diketopiperazine ring of cyclic dipeptides acted as a bitter taste determinant site due to its hydrophobicity. The steric distance between 2 sites was estimated as 4.1 Å from the molecule models of cyclic dipeptides composed of typical amino acids in the bitter peptides. Due to the hypothesis of two bitter taste determinant sites, which bind with the bitter taste receptor via a “binding unit” and a “stimulating unit,” a mechanism for the bitterness in peptides was postulated.     

Oxygen consumption of a Chaoborus species from a neotropical reservoir (socuy reservoir,Venezuela)

Oxygen consumption of all four larval instars of a Chaoborus species from Socuy Reservoir in western Venezuela was studied under laboratory conditions at 25°C. On a logarithmic basis, oxygen consumption per organism increased as a smooth, linear function of body weight (0.49 power of body weight). Observed rates were lower than other Chaoborus species with comparable body weight at the same temperature. Oxygen consumption per unit weight decreased from smaller to large instar larvae. With the exception of instar I, values of oxygen consumption per unit weight were lower than values reported for other Chaoborus species. The results suggest that our species have low energy demands for maintenance, and are consistent with suggestions about high efficiency in use of energy in genus Chaoborus.     

Crystallization,characterization, and preliminary crystallographic studies of mitochondrial carbamoyl phosphate synthetase I of Rana catesbeiana

Carbamoyl phosphate synthetase I (ammonia; E C 6.3.4.16) was purified from the liver of Rana catesbeiana (bullfrog). Crystals of the protein have been obtained at 22°C by the hanging drop vapor diffusion technique, with polyethylene glycol as precipitant. Tetragonal crystals of about 0.3 × 0.3 × 0.7 mm diffract at room temperature to at least 3.5 Å using a conventional source and are stable to X-radiation for about 12 h. Therefore, these crystals are suitablefor high resolution studies. The space group is P4₁2₁2 (or its enantiomorph P4₃2₁2), with unit cell dimensions a = b = 291.6 Å and c = 189.4 Å. Density packing considerations areconsistent with the presence of 4-6 monomers (M_r of the monomer, 160,000) in the asymmetric unit. Amino-terminal sequence of the enzyme and of a chymotryptic fragment of 73.7 kDa containing the COOH-terminus has been obtained. The extensive sequence identity with rat and human carbamoyl phosphate synthetase I indicates the relevance for mammals of structural data obtained with the frog enzyme. © 1995 Wiley-Liss, Inc.     

Evolution and selection of Rhg1, a copy‐number variant nematode‐resistance locus

The soybean cyst nematode (SCN) resistance locus Rhg1 is a tandem repeat of a 31.2 kb unit of the soybean genome. Each 31.2‐kb unit contains four genes. One allele of Rhg1, Rhg1‐b, is responsible for protecting most US soybean production from SCN. Whole‐genome sequencing was performed, and PCR assays were developed to investigate allelic variation in sequence and copy number of the Rhg1 locus across a population of soybean germplasm accessions. Four distinct sequences of the 31.2‐kb repeat unit were identified, and some Rhg1 alleles carry up to three different types of repeat unit. The total number of copies of the repeat varies from 1 to 10 per haploid genome. Both copy number and sequence of the repeat correlate with the resistance phenotype, and the Rhg1 locus shows strong signatures of selection. Significant linkage disequilibrium in the genome outside the boundaries of the repeat allowed the Rhg1 genotype to be inferred using high‐density single nucleotide polymorphism genotyping of 15 996 accessions. Over 860 germplasm accessions were found likely to possess Rhg1 alleles. The regions surrounding the repeat show indications of non‐neutral evolution and high genetic variability in populations from different geographic locations, but without evidence of fixation of the resistant genotype. A compelling explanation of these results is that balancing selection is in operation at Rhg1.     

Cretaceous angiosperm pollen from the Kachaike Formation,south-western Santa Cruz Province,Argentina

Thirty-three angiosperm pollen species are here reported from mid-Cretaceous deposits of the Kachaike Formation, Austral Basin, southern Argentina. Clavatipollenites is the most abundant angiosperm genus, with six well-defined morphological groups recognised on the basis of their reticulum morphology and sculpture. Pollen of eudicots are scarce, represented by tricolpate (Psilatricolpites spp. and Tricolpites spp.), tricolporoidate and tricolporate morphotypes (Dryadopollis spp.). Increasing complexity in the aperture structure is seen throughout the sequence; tricolpate and tricolporoidate forms are recorded in almost all samples, while tricolporate pollen grains are restricted to the middle and upper levels of the unit. The high species richness and abundance of monocolpate-ulcerate angiosperm related to monocots or magnoliids sensu lato recorded in the unit is comparable to that previously recognised in other assemblages from the early and middle Albian of the southern (e.g. Australia) and northern hemispheres (e.g. Western Portuguese basin, Europe). The recorded increase in the number of angiosperm species towards the middle and upper parts of the Kachaike Formation, with the presence of monocolpate, tricolpate, tricolporoidate and tricolporate pollen, suggests an early-early middle Albian age for these parts of the unit, in agreement with the early Albian age proposed for its basal levels on the basis of dinoflagellates.     

Crystallization and preliminary X-ray diffraction studies of leishmanolysin,the major surface metalloproteinase from Leishmania major

The membrane-bound GPI-anchored zinc metalloproteinase leishmanolysin purified from Leishmania major promastigotes has been crystallized in its mature form. Two crystal forms of leishmanolysin have been grown by the vapor diffusion method using 2-methyl-2,4-pentanediol as the precipitant. Macroseeding techniques were employed to produce large single crystals. Protein microhet-erogeneity in molecular size and charge was incorporated into both crystal forms. The tetragonal crystal form belongs to the space group P4₁2₁2 or the enantiomorph P4₃2₁2, has unit cell parameters of a = b = 63.6 Å, c = 251.4 Å, and contains one molecule per asymmetric unit. The second crystal form is monoclinic, space group C2, with unit cell dimensions a = 107.2 Å, b = 90.6 Å, c = 70.6 Å, β = 110.6°, and also contains one molecule per asymmetric unit. Both crystal forms diffract X-rays beyond 2.6 Å resolution and are suitable for X-ray analysis. Native diffraction data sets have been collected and the structure determination of leishmanolysin using a combination of the isomorphous replacement and the molecular replacement methods is in progress. © 1995 Wiley-Liss, Inc.     

Molecular systematics of Brassica and allied genera in subtribes Brassicinae, Raphaninae, Moricandiinae, and Cakilinae (Brassicaceae, tribe Brassiceae); the organization and evolution of ribosomal gene families

DNA restriction endonuclease fragment analysis was used to obtain new information on the genomic organization of ribosomal DNA (rDNA) of Brassica and allied genera. The total genomic DNA of 95 accessions of 52 species representing 16 genera was restricted with six enzymes, and the restriction fragments were probed with three ribosomal clones (pTA71, Ver 18‐6, and Ver 6‐5). Eleven repeat unit length classes were recognized. The repeat unit size classes of 8.9 kb and 9.5 kb were observed most commonly, being represented in 17 and 14 species, respectively. The restriction enzyme SacI produced three to six (generally three) bands with detectable hybridization to the probe pTA71. This probe–enzyme combination indicated a remarkable uniformity amongst Brassica and allied genera in the coding region of repeat units. By contrast, an extensive size variation in the restriction fragments could be localized in the intergenic spacer (IGS) region. Eleven IGS‐containing length variants were detected. Complex hybridization patterns, resulting from extensive repeat unit heterogeneity and taxon‐specific methylation of one or more cleavage sites, were obtained with the EcoRI + pTA71 combination. The relative homologies between the coding regions were evident from the presence of 1.5 kb in all the taxa, and 0.4‐, 1.3‐, and 1.7‐kb fragments in 33, 27, and 24 species, respectively. The SacI + pTA71 and EcoRI + pTA71 combinations were generally able to distinguish taxa both within and between genera. Three restriction endonuclease digests probed with three ribosomal clones yielded essentially identical fragmentation patterns across all the accessions within the cultivated species Brassica campestris, B. oleracea, and B. juncea. In B. napus, three and seven accessions exhibited restriction profiles similar to one and both diploid progenitor species, respectively. Overall, rDNA repeat unit length polymorphism showed good correlation with the cytodeme‐based classification of Brassica and allied genera. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 157 , 545–557.     

Synthesis,resolution, and chiroptical properties of hemicryptophane cage controlling the chirality of propeller arrangement of a C3 triamide unit

The five‐steps synthesis of a hemicryptophane cage combining a benzene‐1,3,5‐tricarboxamide unit and a cyclotriveratrylene (CTV) moiety is described. Chiral high‐performance liquid chromatography (HPLC) was used to resolve the racemic mixture. The absolute configuration of the isolated enantiomers was assigned by comparison of the experimental electronic circular dichroism (ECD) spectra with the calculated ones. X‐ray molecular structures reveal that the capped benzene‐1,3,5‐tricarboxamide unit adopts a structurally chiral conformation in solid state: the chirality of CTV moiety controls the Λ or Δ orientation of the three amides.     

Influence of rocks on soil temperature,soil water potential,and rooting patterns for desert succulents

Summary At a site in the Sonoran Desert, subterranean rocks and exposed boulders affected soil water potential as well as root morphology and distribution. For Agave deserti, the number of lateral roots per unit length of main root was 11 times higher under rocks and six times higher alongside rocks than in rock-free regions. Total root length per unit soil volume for Echinocereus engelmannii averaged 3-fold higher within 1 cm of boulders than 5 cm away, where the soil was drier. The total length of lateral roots per unit length of main root for Ferocactus acanthodes was 4.2 m m^–1 under rocks but only 0.8 m m^–1 in rock-free regions. The number of lateral roots per unit length of main root for Opuntia acanthocarpa was 7-fold higher alongside rocks than in rock-free regions and even higher under rocks. For transplanted and watered A. deserti, the number of new main roots produced per 1–2 month interval averaged 13 for five plants on the north side of boulders, 8 on the south side, 11 for five plants with half of their roots under rocks, 2 for those with half of their roots over rocks, and 3 for the control plants without rocks. Laboratory experiments showed that the soil water potential under rocks for 10 and 30 mm waterings stayed above –0.5 MPa for 13 and 19 d longer, respectively, than for regions away from rocks. The shortwave absorptance of granitic rocks from the field site was 0.82, the thermal conductivity coefficient was 1.50 W m^–1 °C^–1, and the volumetric heat capacity was 1.75 MJ m^–3 °C^–1. Field measurements indicated that 5-cm-thick buried rocks decreased the diel variation in soil temperatures on their undersurface by only 0.4° C compared with soil. Thus, the primary influence of rocks at the field site on root proliferation and branching for the four species was apparently caused by influences on soil water content.