PARSIMONY, HOMOLOGY AND THE ANALYSIS OF MULTISTATE CHARACTERS

Abstract— The order of states in a transformation series describes an internested set of synapomorphies. States adjacent to each other in the transformation series thus share a degree of homology not found in the other states. Whether the level of homology is relatively apomorphic is determined by rooting the order with outgroup comparison. The analysis of state order is a homology problem and is solved with a two-step process using similarity and congruence with other characters as criteria. Other methods that have been proposed (e.g. transformation series analysis, non-additive analysis, morphocline analysis, ontogenetic analysis) fail to apply both similarity and congruence, and thus cannot be used independently for determining character state order.     

THE ORIGIN AND GENETIC BASIS OF OBLIGATE PARTHENOGENESIS IN DAPHNIA PULEX

Sex in Daphnia is environmentally determined, and some obligately parthenogenetic clones of D. pulex have retained the ability to produce males. In the present study, males from 13 such clones were crossed to sexual females from closely related cyclical parthenogens both to determine whether the males were capable of producing viable hybrids and to determine the mode of reproduction of the hybrids. A total of 178 genetically confirmed hybrids were produced, with each of the 19 attempted crosses resulting in some viable hybrids. On average, only 34% of the hybrid eggs that initiated development survived to the reproductive stage, suggesting some incompatibility between the parents. The absence of any association between survivorship and parental or hybrid genotype indicated, however, that there is no specific genetic incompatibility associated with the marker loci used. The inability of most hybrids to produce normal resting eggs is further evidence of a general genomic incompatibility between the parents. Ten of the hybrids produced viable resting eggs, permitting tests to determine their mode of reproduction. Six of the 10 hybrids reproduced by cyclical parthenogenesis, like their maternal parent. The remaining four hybrids reproduced by obligate parthenogenesis, like their paternal parent, demonstrating that the genes suppressing meiosis can be transmitted by the male parent. These results support a model for the generation of new clones that involves the spread of genes suppressing meiosis and provide evidence that the high genotypic diversity observed in obligately parthenogenetic populations of D. pulex is a result of the multiple origin of new clones from the cyclical parthenogens. Evidence was also obtained suggesting that the obligately parthenogenetic clones carry a load of recessive deleterious genes.     

大鼠肝癌模型CBRH—3的建立及其生物学特性

用ＤＥＮＡ诱发近交系Ｗｉｓｔａｒ大鼠,经三个月后得原发性肝癌,移植于同品系幼鼠,从而建立了 一株染色体众数正常,ＡＥＰ阳性的大鼠移植性肝癌模型,命名为ＣＢＲＨ－３,病理鉴定为肝细胞型肝 癌。至今已传至６０余代,目前生长稳定。     

真水狼蛛幼蛛各龄期的形态特征和生长发育

幼蛛在蜘蛛的种群中占有很大比例。通过室内饲养。获得了不同龄期的真水狼蛛幼蛛。其体重、体长、背甲宽、步足长、眼域宽以及中斑下的条形纵斑长度都随着龄期的增大而增加。背甲宽和中斑下的条形斑纹长度可用来判断真水幼蛛的龄期。雌蛛的取食量大于雄蛛,高龄幼蛛大于低龄幼蛛。幼蛛在蜕皮时不取食,蜕皮后,取食量明显增加。     

REVISED CLASSIFICATION OF THE GENUS PACHYMENIA BASED ON MORPHOLOGICAL AND MOLECULAR CHARACTERS

Taxonomic discrimination in the genus Pachymenia (Rhodophyta) in New Zealand is based primarily on phenotypic characters of the thallus. The taxonomic problems raised by this classification method are due to highly variable thallus characters such as blade thickness, blade width, degree of thallus branching, and variation in anatomical characters. Delineation of species is further complicated by a lack of adequate knowledge about the responses of phenotype to environmental variation. There are currently three species recognized in this genus that are endemic to New Zealand: a prostrate species P. crassa , and two erect species, P. laciniata and P. lusoria. In this study, two approaches are used to investigate the current delineation of these species. Morphological and anatomical characters of field collected material and herbarium specimens from throughout the species' distributional ranges were quantified. Multivariate analyses were used to identify discrete phenotypic groups. Species relationships were further analyzed by quantifying the variation found within the internal transcribed spacer region (ITS) of the nuclear ribosomal DNA. The results obtained from both approaches will be discussed with regards to possible re-classification of species relationships within this genus. We suggest that the two erect species should be merged, and the currently recognized P. lusoria should be separated into at least two taxonomic groups.     

两种眉足蟹科蟹类的形态特征与遗传多样性研究

研究描述了解放眉足蟹和日本冠鞭蟹的形态特征,并基于线粒体COⅠ基因片段分析了解放眉足蟹和日本冠鞭蟹的遗传多样性现状。解放眉足蟹的主要形态特征为体白色,甲壳呈琵琶形,背部中线隆起,表面较光滑,步足扁平,指节弯曲明显;日本冠鞭蟹的主要形态特征为体红褐色,甲壳呈卵形,头胸甲长大于甲宽,有许多白色斑点,步足简化成铲,上有刚毛。在长度为659 bp的线粒体COⅠ基因片段上,解放眉足蟹20个个体共检测到15个单倍型,平均GC含量为33.26%,单倍型多样度为0.9421,核苷酸多样度为0.0059;日本冠鞭蟹20个个体共检测到15个单倍型,平均GC含量为47.65%,单倍型多样度为0.9415,核苷酸多样度为0.0061。基于K-2P模型计算得到解放眉足蟹和日本冠鞭蟹种间遗传距离为0.2705,解放眉足蟹个体间平均遗传距离为0.006,日本冠鞭蟹个体间平均遗传距离为0.006,种间遗传距离显著大于种内遗传距离。以Emerita emeritus为外群构建系统树,不同蝉蟹分别形成各自独立的分支,表明COⅠ基因可以作为蝉蟹DNA条形码辅助分类。     

THE GENETIC BASIS OF LIFE-HISTORY CHARACTERS IN A POLYCHAETE EXHIBITING PLANKTOTROPHY AND LECITHOTROPHY

The polychaete Streblospio benedicti is unusual in that several field populations consist of individuals that exhibit either planktotrophic or lecithotrophic larval development. Planktotrophy in this species involves production of many small ova that develop into feeding larvae with a two- to three-week planktonic period. Lecithotrophy involves production of fewer, larger ova that develop into nonfeeding larvae that are brooded longer and have a brief planktonic stage. Reciprocal matings were performed to investigate genetic variance components and the correlation structure of life-history traits associated with planktotrophy and lecithotrophy. Our objective was to better understand persistence of this developmental dichotomy in Streblospio benedicti, and among marine invertebrates in general. Substantial additive genetic variation (75–98% of total) was detected for the following characters at first reproduction: female length; position of the first gametogenic setiger and first brood pouch; ovum diameter; three traits related to fecundity (numbers of ova per ovary, larvae per brood pouch, and larvae per brood); median larval planktonic period and the presence of larval swimming setae; but not for total number of brood pouches; larval length; larval feeding; and larval survivorship. Based on the unusual geographic distribution of development modes in this species, we hypothesize that the developmental traits have evolved in allopatry and have only recently come into contact in North Carolina. The high additive contribution to variance observed for many traits may be inflated due to (a) nonrandom breeding in nature, and (b) examination of only one component of an age-structured population at one time. Nuclear interaction variance and maternal variance accounted for 84% of the total variation in larval survivorship. This observation supports other empirical studies and theoretical predictions that nonadditive components of variance will increase in importance in individual traits that are most closely tied to fitness. A network of life-history trait correlations was observed that defines distinct planktotrophic and lecithotrophic trait complexes. Negative genetic correlations were present between fecundity and egg size, between fecundity and position of the first gametes, and between larval survivorship and median planktonic period. Positive genetic correlations were detected between fecundity and female size at first reproduction and between planktonic period and the presence of swimming setae. Intergenerational product-moment correlations were negative for larval length and fecundity, planktonic period and egg size, female size and larval survivorship, and fecundity and larval survivorship. If the genetic correlation structure observed in the laboratory persists in the field, it may constrain responses of individual characters to directional selection, and indirectly perpetuate the dichotomies associated with planktotrophy and lecithotrophy.     

THE RELATIONSHIP AND ORIGIN OF TSUGA HETEROPHYLLA AND TSUGA MERTENSIANA BASED ON PHYTOCHEMICAL AND MORPHOLOGICAL INTERPRETATIONS

Morphological intermediacy between Tsuga heterophylla and Tsuga mertensiana has stimulated controversy concerning the relationship between these two hemlock species and has led to wide acceptance of hybridization as a causative factor of intermediate forms in areas of distributional overlap. In this study, comparative’ chemical analyses were used to test the theory of hybrid derivation of intermediates. Chromatographic analyses were further applied to the phylogenetic ranking of several North American and Asian species of Tsuga and to the examination of the hypothesis that Tsuga mertensiana is a derivative of intergeneric hybridization involving Tsuga heterophylla and Picea sitchensis. Chromatographic data derived from extensive sampling in the western Cascades of Washington led me to conclude that hybridization of Tsuga heterophylla and T. mertensiana is a possible but rare phenomenon and is not necessarily indicated by morphological intermediacy. Phylogenetically both of these species are typical representatives of Tsuga and are distinct from species of Picea. There is, however, some support for the derivation of Tsuga mertensiana by intergeneric hybridization.     

THE PHYSIOLOGICAL BASIS OF MORPHOLOGICAL POLARITY IN REGENERATION. II

1. The experiments show that the mass of air roots formed in a stem increases with the mass of the leaf attached to the stem, though it has not been possible to establish an exact mathematical relation between the two masses, owing to unavoidable sources of error. 2. Darkened leaves do not increase the mass of roots formed. 3. In stems suspended horizontally air roots appear on the lower side of the stem, with the exception of the cut end where they usually appear around the whole circumference of the stem. When the lower half of a stem suspended horizontally is cut off, roots are formed on the upper side. It is shown by experiments on leaves suspended horizontally that the more rapidly growing roots and shoots on the lower side inhibit the root and shoot formation in the upper half of such a leaf; and likewise the more rapid formation of roots on the lower side of a horizontally suspended stem seems to account for the inhibition of root formation on the upper side of such a stem. Likewise the more rapid growth of shoots on the upper side of a stem suspended horizontally is likely to inhibit the growth of shoots on the lower side. 4. Each leaf contains in its axil a preformed bud capable of giving rise to a root, which never grows out in the normal stem on account of the inhibitory influence of the normal roots at the base of the plant. These dormant root buds are situated above (apically from) the dormant shoot bud. The apical root buds can be caused to develop into air roots when a piece of stem is cut out from a plant from which the leaves except those in the basal node of the piece are removed. The larger these basal leaves the better the experiments succeed. 5. These apical air roots grow out in a few days, while the roots at the basal end of the stem (which in our experiments dip into water) grow out about a week later. As soon as the basal roots grow out in water they cause the air roots in the more apical region of the stem to dry out and to disappear. 6. In addition to the basal roots, basal nodes have also an inhibitory effect on the growth of the dormant root buds in the apical region of a stem. This is indicated by the fact that a stem with one pair of leaves near the base will form apical air roots more readily when no node is situated on the stem basally from the leaf than if there is a node basally from the leaf.     

HOMOLOGY OF THE PALLIAL AND PULMONARY CAVITY OF GASTROPODS

The development and morphology of the pallial and pulmonarycavities of various gastropods has been investigated using epoxy-resinserial sections. In the veliger larvae of Cellana sandwicensis(Patellogastro-poda), Gibbula adansonii (Vetigastropoda), Modulustectum (Caenogastropoda) and Ovatella myosotis (Pulmonata) theformation of the pallial cavity is nearly identical. After shellformation a shallow dorsal pallial groove develops beneath themantle edge. During the late veliger stage, the ectoderm formsa deep invagination along the bottom of the pallial groove onthe right side of the larva, giving rise to the pallial cavity.In the ellobiid O. myosotis the pallial cavity becomes the lung(=pulmonary cavity), without any major post-metamorphic modification.Thus, the lung of this species is clearly homologous with thepallial cavity of prosobranchs. The lung of pulmonates withveliger development, as well as of fresh water basommatophoransand stylommatophorans, can be shown to be homologous by comparisonof adult morphology. In contrast to previous views, the pulmonatelung should be regarded as truly homologous with the pallialcavity of prosobranchs and opisthobranchs. In the onchidiidpulmonate Onchidium cf. branchiferum, the larval pallial cavityshifts posteriorly after metamorphosis, where it gives riseto a lung and a cloaca. Contrary to previous interpretations,it can be shown that the onchidiid lung is homologous with atleast part of the pallial cavity. Smeagol climoi has only asmall pallial cavity and no separate lung. The previously described‘lung’ is shown to be a gland. The re-evaluationof the development and morphology of the pulmonate lung hasimportant systematic implications: (1) The pulmonary cavitydoes not represent a synapomorphic character of pulmonates.(2) The gymnomorphs cannot be separated from the remaining pulmonatesbased on lung development. (3) The lack of a lung in the smeagolidsmight give reason to reconsider this group's systematic placementwithin the pulmonates.     

ISOLATION OF CELL NUCLEI FROM THE MAMMALIAN CEREBRAL CORTEX AND THEIR ASSORTMENT ON A MORPHOLOGICAL BASIS

An aqueous method is described for the isolation of highly purified nuclei from the cerebral cortex of adult guinea pigs. Erythrocytes were removed by a short-time perfusion of the brain, myelin fragments by a rapid mechanical method, and blood capillaries by a centrifugal sieving through dense sucrose solutions. The nuclear preparation retained the activity of ATP:NMN adenylyltransferase. Recoveries of DNA in the P4I, P4II, P_L and P_S preparations were 30, 43, 8, and 7%, respectively. Microscopy and phase contrast microscopy showed a satisfactory removal of erythrocytes, myelin fragments, capillaries, and cytoplasmic elements. Biochemical purity of samples was verified by the absence of several cytoplasmic enzyme activities. In the electron microscope, the majority of nuclei showed well-preserved nuclear membranes, with nuclear pores, and were provided with a finely textured nucleoplasm. Occasional contaminants were elements of endoplasmic reticulum and of the endothelium. Assortment of nuclei on a morphological basis showed that 55–65% and 47–53% of nuclei in the P4I and P4II preparations, respectively, consisted of neuronal nuclei. In the P_L preparation, the population of neuronal nuclei ranged between 72 and 83%, while 94–99% of the nuclei in the P_S preparation consisted of smaller nuclei, most likely of oligodendroglial origin.     

CONCEPTS AND TESTS OF HOMOLOGY IN THE CLADISTIC PARADIGM

Abstract— Logical equivalence between the notions of homology and synapomorphy is reviewed and supported. So-called transformational homology embodies two distinct logical components, one related to comparisons among different organisms and the other restricted to comparisons within the same organism. The former is essentially hierarchical in nature, thus being in fact a less obvious form of taxic homology. The latter is logically equivalent to so-called serial homology in a broad sense (including homonomy, mass homology or iterative homology). Of three tests of homology proposed to date (similarity, conjunction and congruence) only congruence serves as a test in the strict sense. Similarity stands at a basic level in homology propositions, being the source of the homology conjecture in the first place. Conjunction is unquestionably an indicator of non-homology, but it is not specific about the pairwise comparison where non-homology is present, and depends on a specific scheme of relationship in order to refute a hypothesis of homology. The congruence test has been previously seen as an application of compatibility analysis. However, congruence is more appropriately seen as an expression of strict parsimony analysis. A general theoretical solution is proposed to determine evolution of characters with ambiguous distributions, based on the notion of maximization of homology propositions. According to that notion, ambiguous character-state distributions should be resolved by an optimization that maximizes reversals relative to parallelisms. Notions of homology in morphology and molecular biology are essentially the same. The present tendency to adopt different terminologies for the two sources of data should be avoided, in order not to obscure the fundamental uniformity of the concept of homology in comparative biology. “A similar hierarchy is found both in ‘structures’ and in ‘functions’. In the last resort, structure (i.e. order of parts) and function (order of processes) may be the very same thing […].” L. von Bertalanlfy “[…] it is the fact that certain criteria enable us to match parts of things consistently which suggests that mechanisms of certain kinds must have been involved in their origin.” N. Jardine and C. Jardine     

VOCAL DIALECTS AND THE STRUCTURE OF GEOGRAPHIC VARIATION IN MORPHOLOGICAL AND ALLOZYMIC CHARACTERS IN THE RUFOUS-COLLARED SPARROW,ZONOTRICHIA CAPENSIS

The geographical patterns of variation shown at 20 allozyme and non-enzymatic protein-coding loci, in 8 external, and in 12 skeletal morphological characters in the rufous-collared sparrow, Zonotrichia capensis, were analyzed in order to test the local (genetic) adaptation hypothesis regarding the origin and maintenance of vocal dialects in birds. Approximately 20 males were collected from each of four sites within each of six different dialect zones. There was significant variability in both external and skeletal morphology among all 24 sites and among dialect groups. Average Wright's corrected fixation coefficient (F_ST) was 0.118, indicating significant genetic differentiation among all sites, regardless of dialect. Hierarchical F statistics indicated that only 50% of among site variability was due to a dialect effect. Puna dialect sites were highly differentiated from all other sites with respect to both morphology (external and skeletal measures) and allozyme frequencies. Heterogeneity at the PGM-1 locus among puna scrub sites was the major cause of the high average F_ST across all sites, and within the puna scrub dialect. Average genetic differentiation among non-puna sites (F_ST = 0.018) was similar to differentiation among sites within each of the five non-puna dialect groups (mean F_ST = 0.0132 ± 0.0069). Hierarchical F statistics indicated that none of the among-site differentiation in this subset of samples was due to a dialect effect. These observations are not consistent with the local adaptation hypothesis. All significant genetic heterogeneity occurred among sites in mountainous habitats, and we suggest that topography and patchiness of habitat may have been major factors involved in population differentiation, rather than vocal dialects.