Marine biodiversity of Costa Rica: Crustacea: Infraorder Anomura

The anomuran crabs are among the best known crustacean groups from the Pacific coast. However, this group is poorly known from the Caribbean coast of Costa Rica. In this compilation based on the literature and the collection at the Zoology Museum, Biology School, University of Costa Rica, we report the presence of 114 species of the Infraorder Anomura for Costa Rica, 20 species from the Caribbean, 96 species from the Pacific (two are present on both coasts). Twenty-nine species are new reports for Costa Rica, 15 from the Caribbean coast (74% of the total of species from that coast) and 14 from the Pacific (15% of the total from the Pacific). The range often species is extended to Costa Rica, siete from the Caribbean and three from the Pacific. Six species are reported for the first time from Cocos Island, where there are also four endemic species.     

Diversity of the free-living marine and freshwater Copepoda (Crustacea) in Costa Rica: a review

The studies on marine copepods of Costa Rica started in the 1990’s and focused on the largest coastal-estuarine systems in the country, particularly along the Pacific coast. Diversity is widely variable among these systems: 40 species have been recorded in the Culebra Bay influenced by upwelling, northern Pacific coast, only 12 in the Gulf of Nicoya estuarine system, and 38 in Golfo Dulce, an anoxic basin in the southern Pacific coast of the country. Freshwater environments of Costa Rica are known to harbor a moderate diversity of continental copepods (25 species), which includes 6 calanoids, 17 cyclopoids and only two harpacticoids. Of the +100 freshwater species recorded in Central America, six are known only from Costa Rica, and one appears to be endemic to this country. The freshwater copepod fauna of Costa Rica is clearly the best known in Central America. Overall, six of the 10 orders of Copepoda are reported from Costa Rica. A previous summary by 2001 of the free-living copepod diversity in the country included 80 marine species (67 pelagic, 13 benthic). By 2009, the number of marine species increased to 209: 164 from the Pacific (49% of the copepod fauna from the Eastern Tropical Pacific) and 45 from the Caribbean coast (8% of species known from the Caribbean Basin). Both the Caribbean and Pacific species lists are growing. Additional collections of copepods at Cocos Island, an oceanic island 530 km away of the Pacific coast, have revealed many new records, including five new marine species from Costa Rica. Currently, the known diversity of marine copepods of Costa Rica is still in development and represents up to 52.6% of the total marine microcrustaceans recorded in the country. Future sampling and taxonomic efforts in the marine habitats should emphasize oceanic environments including deep waters but also littoral communities. Several Costa Rican records of freshwater copepods are likely to represent undescribed species. Also, the biogeographic relevance of the inland copepod fauna of Costa Rica requires more detailed surveys.     

Phylogeography of the Pygmy Rain Frog (Pristimantis ridens) across the lowland wet forests of isthmian Central America

We used a phylogeographic approach to elucidate the evolutionary history of a lineage of frogs, known as Pristimantis (formerly Eleutherodactylus) ridens (Anura: Brachycephalidae), restricted to the wet forests occurring along the Caribbean versant of isthmian Central America as well as the disjunct wet forest on the Pacific slope of Costa Rica. We placed our phylogeographic study of P. ridens within a larger molecular phylogenetic analysis of Central American Pristimantis. All phylogenetic inferences were based on a 1455 base pair fragment of mitochondrial DNA, containing the complete ND2 gene and five flanking tRNA genes. Our reconstruction of the intraspecific phylogeny of P. ridens yielded a basal trichotomy dating to an estimated 12+ million years ago (Ma), consisting of central Panama, western Panama, and Costa Rica plus Honduras. Thus, the presence of P. ridens appears to predate the completion of the Isthmus 3.1Ma. Using a parametric bootstrap (SOWH) test, we evaluated four a priori zoogeographic hypotheses for the origin and spread of P. ridens. This analysis suggested that the P. ridens populations on the Caribbean versant of Costa Rica were established by Pacific versant ancestors only recently, in contrast to the very old lineages found in Panama. Our results support a model of Miocene colonization, long-term geographic stasis, followed by rapid dispersal across the Caribbean lowlands during the Pliocene or Pleistocene.     

New records of benthic marine algae and Cyanobacteria for Costa Rica,and a comparison with other Central American countries

We present the results of an intensive sampling program carried out from 2000 to 2007 along both coasts of Costa Rica, Central America. The presence of 44 species of benthic marine algae is reported for the first time for Costa Rica. Most of the new records are Rhodophyta (27 spp.), followed by Chlorophyta (15 spp.), and Heterokontophyta, Phaeophycea (2 spp.). Overall, the currently known marine flora of Costa Rica is comprised of 446 benthic marine algae and 24 Cyanobacteria. This species number is an under estimation, and will increase when species of benthic marine algae from taxonomic groups where only limited information is available (e.g., microfilamentous benthic marine algae, Cyanobacteria) are included. The Caribbean coast harbors considerably more benthic marine algae (318 spp.) than the Pacific coast (190 spp.); such a trend has been observed in all neighboring countries. Compared to other Central American countries, Costa Rica has the highest number of reported benthic marine algae; however, Panama may have a similarly high diversity after unpublished results from a Rhodophyta survey (Wysor, unpublished) are included. Sixty-two species have been found along both the Pacific and Caribbean coasts of Costa Rica; we discuss this result in relation to the emergence of the Central American Isthmus.     

PHYLOGENETIC RELATIONSHIPS OF GELIDIALES SPECIES IN COSTA RICA

Despite a general paucity of studies on marine algae in Costa Rica, within the red algal order Gelidiales, 9 species are reported from the Caribbean, and 6 species from the Pacific. In this study 5 species from the southeast Caribbean coast and 2 species from the northwest Pacific coast of Costa Rica were collected for DNA sequence and morphological analyses. At the time of this writing, morphological observations of four Caribbean taxa have identified them as Gelidium microdonticum , Pterocladiella capillacea , P. melanoidea , and Gelidiella acerosa. In rbc L sequence analyses, Gelidium microdonticum is resolved within a clade of small Gelidium species predominantly found in the south Atlantic. Two collections representing different forms of Pterocladiella melanoidea sensu Dawson were found to have identical rbc L sequences. These samples were resolved in rbc L trees with a taxon from Texas identified as P. bartlettii and not P. melanoidea from Europe. Comparisons with type material are being made to verify these identifications so that the status of P. melanoidea in the Caribbean may be determined. The unidentified Caribbean taxon is resolved as a distinct species within the Pterocladiella clade as well. Gelidiella acerosa from Caribbean Costa Rica is closely allied with other Caribbean G. acerosa samples in rbc L trees. The two pacific taxa are small intertidal turf species and have not yet been identified. Sequence analyses resolve these taxa within a large clade of Indo-Pacific and Caribbean Gelidium species.     

Marine biodiversity of Costa Rica: class Polychaeta (Annelida)

Three hundred and thirty two species of polychaetes belonging to 50 families are reported for Costa Rica based on previously published reports. In a few families, available material was re-examined and appropriate changes in species identifications were made. Only three species, (Glycera oxycephala Ehlers, 1887; Hemipodia pustulata (Friedrich 1956); and Scolepis (Scolepis) squamata (Miller, 1806)) have been reported from the Caribbean coast of Costa Rica, and these three species have also been reported from the Pacific Coast. The families with more than 15 species are the Spionidae (26), Cirratulidae (24), Nereididae (21), Lumbrineridae (19) and Paraonidae (16). Despite extensive sampling on the Pacific coast over the last 25 years, the Costa Rican polychaete fauna, especially that of the Caribbean coast, remains poorly known.     

Trace metals in coastal sediments from Costa Rica

Marine sediment samples from four coastal ecosystems in Costa Rica were taken between the years 2000-2002 and their iron, lead, copper and zinc concentrations were determined by the atomic absorption technique with flame or graphite furnace. In the Pacific coast, Culebra Bay (Papagayo Gulf), Gulf of Nicoya, and Golfito Bay (Dulce Gulf), were selected as representative sites, and Moín Bay, at the Caribbean coast. Mean metal concentrations for all ecosystems followed the same pattern: Fe > Zn > Cu > Pb. No temporal pattern was found for any metal. Iron and copper mean concentrations were higher in Golfito Bay (5.8% and 87 microg/g, respectively) and lower in Moín Bay (3.4% and 52 microg/g, respectively). Zinc mean concentration was also higher in Golfito Bay (96 microg/g), but lower in Culebra Bay (66 microg/g). Lead mean concentration was higher in Moín Bay (6.4 microg/g) and lower in Culebra Bay (3.0 microg/g). Lead highest concentrations occurred in the Caribbean and in Golfito Bay, and for the rest of the elements the maximum values were found in Golfito Bay. On the basis of data obtained in this work, Culebra Bay was considered a relatively unpolluted location; Golfito Bay was more contaminated, and Moín Bay and the Gulf of Nicoya showed an intermediate condition.     

Costa Rica's Marine Protected Areas: status and perspectives

With 51 100km2 of terrestrial area and 589 000km2 of national waters, Costa Rica is considered one of the countries with the greatest biodiversity. It has approximately 3.5% of the world marine species. In the last four decades, Costa Rica has done a considerable effort to create a representative system of Protected Areas (PA), mainly terrestrial. We present an assessment of the current situation of the Marine Protected Areas (MPA) in Costa Rica, through an historical analysis, and an evaluation of their distribution, coverage and management categories. Costa Rica has 166 protected areas covering 50% of the coastline; of these 20 are MPAs, classified as National Parks (90.6%), National Wildlife Refuges (6.6%), Wetlands (1.5%), Biological Reserves (1%), and one Absolute Natural Reserve (0.3%). According to IUCN criteria, 93.7% correspond to category II, 5% to IV and 1.3% to I. The marine protected surface is 5 296.5km2, corresponding to 17.5% of the territorial waters and 0.9% of the Exclusive Economic Zone. The median distance between MPAs is 22.4km in the Pacific and 32.9km along the Caribbean. The median size is close to 54km2. The main threats to MPAs are the lack of coordination between governmental agencies, limited economic resources, restricted patrolling and control, poor watershed management, and rampant coastal alteration.     

First record of entomopathogenic nematodes (Steinernematidae and Heterorhabditidae) in Costa Rica

A survey of entomopathogenic nematodes was conducted in the north Pacific (Guanacaste Conservation Area) and southeast Caribbean (Gandoca-Manzanillo Natural Refuge) regions of Costa Rica. Out of a total of 41 soil samples, 5 were positive for entomopathogenic nematodes (20.5%), with 3 (12.3%) containing Steinernema and 2 (8.2%) Heterorhabditis isolates. Morphological and molecular studies were undertaken to characterize these isolates. The Heterorhabditis isolates were identified as Heterorhabditis indica and the three Steinernema isolates were identified as two new undescribed species. H. indica was recovered from a coastal dry forest. Steinernema n. sp. 1 was isolated from a rainforest valley, between volcanoes. Steinernema sp. n. 2 was isolated from sand dunes in the Caribbean Coast (Punta Uva) near the rainforest strip along the coast. Although limited to two geographic regions, this study suggests entomopathogenic nematodes may be diverse and perhaps widely distributed in Costa Rica. A more intensive survey, covering all geographic regions is currently undergoing.     

Seagrass monitoring at Perezoso, Cahuita, Costa Rica (CARICOMP site)

The seagrass of Perezoso (Cahuita National Park, Caribbean coast of Costa Rica) was monitored using the CARICOMP protocol. Productivity (2.7 +/- 1.15 g/m2/d; n=74) was intermediate, compared to other Caribbean sites. Total biomass was intermediate to high (750-1500 g/m2) at most CARICOMP sites (Colombia, Cuba, Mexico, Puerto Rico and Venezuela) including Costa Rica (822.8 +/- 391.84 g/m2; n=32). Turnover rates were high (5.5 +/- 1.36%; n=74) compared to what was found in March and August at other sites. Shoot densities average 725 shoots/m2, in the Caribbean region, while in Costa Rica the value was higher (1184 +/- 335.5 shoots/m2). Average leaf length and width in the entire region were 14.4 cm and 10.6 mm, respectively, similar to what we found, but leaf area index average 3.4 m2 m(-2), higher than what was found in Costa Rica (0.92 m2 m(-2)). At Cahuita, seagrass productivity was significantly lower in March 2005 compared with the previous six years, and biomass has decreased with time. Seagrass productivity and biomass are being affected by the maximum temperatures, which increased by almost 10 degrees C from 1999 to 2005, and show a high negative correlation. Turnover rate and temperature were not correlated. Recreational boating, swimming and nutrient loading from deforested lands in the coast, the upstream rivers and local pollution are potential sources of impact to the seagrass beds at Cahuita.     

Spatial distribution of light and nutrients in some coral reefs of Costa Rica during January 1997

The proximity of coral reefs to areas of present and future coastal development in Costa Rica highlights the need for assessing environmental conditions important to maintaining healthy corals. In January 1997 a survey of light penetration, inorganic nutrient concentrations, temperature, and salinity was conducted in the patch reefs of Bahía Culebra (Pacific Ocean) and on the Caribbean coast in the fringing reef at Parque Nacional Cahuita and near Limón. Temperature was 28 degrees C at all sites, and salinity ranged from 33 to 36 psu. Light attenuation coefficients ranged from 0.12 to 0.29 m(-1) in reef areas. Seawater nutrient concentrations were within the range of concentrations reported for tropical reef waters; combined NO3- and NO2- and PO4(3-) were each below 1 microM. NH4+ ranged from 0.2 to 7 microM, representing a significant source of nitrogen. The ratio of total dissolved inorganic nitrogen to phosphate averaged 27 for all reef waters. The high nitrate (3.6 microM) and light attenuation (0.95 m(-1)) values from the surface waters of the La Estrella plume (Caribbean coast) show that this river represents a significant source of nitrogen and light attenuation for the neighboring reefs at Cahuita. This survey provides a useful baseline for future studies, which should monitor these important coastal coral reef areas during both wet and dry seasons.     

PCB contamination in surface sediments in the coastal waters of Costa Rica

This paper describes the initial investigation of PCB concentrations in four geographical regions (three on the Pacific and one in the Caribbean) of coastal Costa Rica: Bahia Culebra, Golfo Dulce, Golfo de Nicoya, and Limón. Overall total concentrations of PCB were low in all areas except around the port of Golfito (Golfo Dulce). Overall average concentration is 2.80 ng/g dw, with a standard deviation of 2.75. The low concentration could be due to lack of contamination or the subsequent degradation in the warm climate, or the low sorptive capacity of the sediment. Further investigation is ongoing.     

Renal oxalosis in free-ranging green turtles Chelonia mydas

Eighteen green turtles Chelonia mydas recovered from the Atlantic and Gulf coasts of Florida and Tortuguero National Park, Costa Rica, were diagnosed with renal oxalosis by histopathological examination. Affected sea turtles included 14 adults and 4 immature animals, which comprised 26% (18/69) of green turtle necropsy cases available for review. Calcium oxalate deposition ranged from small to moderate amounts and was associated with granuloma formation and destruction of renal tubules. All affected turtles died from traumatic events or health problems unrelated to renal oxalosis; however, 1 immature turtle had notable associated renal injury. Crystal composition was confirmed by infrared and scanning electron microscopy and energy dispersive X-ray analysis. The source of calcium oxalate is unknown and is presumed to be of dietary origin.     

On the dispersal of leatherback turtle hatchlings from Mesoamerican nesting beaches

So little is known about the early life history of leatherback turtles (Dermochelys coriacea) from hatchling to adulthood that this period has been termed the 'lost years'. For critically endangered eastern Pacific leatherback populations, continued and rapid declines underscore the urgent need to develop conservation strategies across all life stages. We investigate leatherback hatchling dispersal from four Mesoamerican nesting beaches using passive tracer experiments within a regional ocean modelling system. The evolution of tracer distribution from each of the nesting beaches showed the strong influence of eddy transport and coastal currents. Modelled hatchlings from Playa Grande, Costa Rica, were most likely to be entrained and transported offshore by large-scale eddies coincident with the peak leatherback nesting and hatchling emergence period. These eddies potentially serve as 'hatchling highways', providing a means of rapid offshore transport away from predation and a productive refuge within which newly hatched turtles can develop. We hypothesize that the most important leatherback nesting beach remaining in the eastern Pacific (Playa Grande) has been evolutionarily selected as an optimal nesting site owing to favourable ocean currents that enhance hatchling survival.     

The panmixia paradigm of eastern Pacific olive ridley turtles revised: consequences for their conservation and evolutionary biology

Previous studies of the olive ridley Lepidochelys olivacea population structure in the tropical eastern Pacific have indicated the existence of a single panmictic population ranging from Costa Rica to Mexico. This information has been used to design specific management measures to conserve primary nesting beaches in Mexico. However, little is known about olive ridleys in the Baja California Peninsula, their northernmost reproductive limit, where recent observations have shown differences in nesting female behaviour and size of hatchlings relative to other continental rookeries. We used mtDNA control region sequences from 137 turtles from five continental and four peninsular nesting sites to determine whether such differences correspond to a genetic distinction of Baja California olive ridleys or to phenotypic plasticity associated with the extreme environmental nesting conditions of this region. We found that genetic diversity in peninsular turtles was significantly lower than in continental nesting colonies. Analysis of molecular variance revealed a significant population structure (Phi ST = 0.048, P = 0.006) with the inclusion of peninsular samples. Our results: (i) suggest that the observed phenotypic variation may be associated with genetic differentiation and reproductive isolation; (ii) support the recent colonization of the eastern Pacific by Lepidochelys; (iii) reveal genetic signatures of historical expansion and colonization events; and (iv) significantly challenge the notion of a single genetic and conservation unit of olive ridleys in the eastern Pacific. We conclude that conservation measures for olive ridleys in Mexico should be revised to grant peninsular beaches special attention.     

Monitoring of the mangrove forest at Gandoca, Costa Rica (CARICOMP site)

The mangrove forest at Gandoca, Refugio Nacional de Vida Silvestre Gandoca-Manzanillo, Caribbean coast of Costa Rica, has been monitored since 1999, following the CARICOMP protocol. The dominant species was the red mangrove, Rhizophora mangle. The peak of productivity and flowering was in July. The mangrove productivity decline from 2001 to 2004 while the temperature rised. Biomass (14 kg/m2) and density (9 trees/10 m2) in Gandoca were relatively low compared to other CARICOMP sites, while productivity in July in Costa Rica (4 g/m2/day) was intermediate, similar to most CARICOMP sites.     

Harmful blooms of cyanobacteria (Oscillatoriaceae) and dinoflagellates (Gymnodiniaceae) in the Golfo de Nicoya, Costa Rica

Recently, the Pacific coast of Costa Rica has experienced an increase in both magnitude and frequency of harmful algae blooms (HAB). The lack of data regarding the dynamics of these events in the area, and the species of microalgae that produce them, are themes of great interest. The blooms have produced negative impacts on fishery resources and on human health in Costa Rica. In May 2002 a HAB left a large number of dead fish along the central Pacific coast. Water samples were collected using a phytoplankton net and fixed for subsequent processing by electron microscopy. In addition, a one liter sample of surface water was taken for later cell count. In the observed HAB, the dominating organisms found were the cyanobacteria Trichodesmiun erythraeum surrounded by high concentrations of Gram-bacteria and the dinoflagellate Cochlodinium cf. polykrikoides. T. erythraeum, is one of the most important N2 fixing cyanobacteria in marine waters that has been associated with HAB events in diverse parts of the world as well as with symptoms that produce contact dermatitis and other discomforts. C. cf. polykrikoides is a dinoflagellete associated with fish kills; although the type of associated toxins are unknown. In a national newspaper 17 cases of intoxication in humans were reported during this same period, which presented respiratory disorders and burning of the eyes. This is the first report in Costa Rica where a cyanobacteria and a dinoflagellate were observed together producing HAB.     

Study of the diversity of culturable actinomycetes in the North Pacific and Caribbean coasts of Costa Rica

In this study, 137 actinomycetes were isolated from subtidal marine sediments in the North Pacific and Caribbean coasts of Costa Rica. Bioinformatics analysis of the 16S rRNA gene sequences assigned the isolates to 15 families and 21 genera. Streptomyces was the dominant genus while the remaining 20 genera were poorly represented. Nearly 70% of the phylotypes presented a coastal-restricted distribution whereas the other 30% were common inhabitants of both shores. The coastal tropical waters of Costa Rica showed a high diversity of actinomycetes, both in terms of the number of species and phylogenetic composition, although significant differences were observed between and within shores. The observed pattern of species distribution might be the result of several factors including the characteristics of the ecosystems, presence of endemic species and the influence of terrestrial runoff. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A fish prey found in the coral snake Micrurus alleni (Serpentes: Elapidae) in Costa Rica

A fish prey found in the coral snake Micrurus alleni (Serpentes: Elapidae) in Costa Rica. The presence of a small specimen of the swamp eel Synbranchus marmoratus (84 mm total length) in the stomach contents of an adult coral snake Micrurus alleni with 692 mm total length from the Caribbean versant of Costa Rica is reported. This eel was swallowed headfirst.