Covalent structural analysis of yeast inorganic pyrophosphatase: Location of groups implicated in the catalytic function; placement of the NH2-terminal 100 residues in the subunit

Covalent structural analysis of two of the three cyanogen bromide fragments from yeast inorganic pyrophosphatase (EC 3.6.1.1, pyrophosphate phosphohydrolase) was undertaken by a strategy involving both automated Edman degradation and conventional sequence analysis. Automated degradation of intact, reduced and carboxymethylated pyrophosphatase provided the sequence of the first 34 residues in the NH₂-terminal 45-residue peptide, CNBr VI, in addition to a partial sequence through 50 cycles which confirmed the overlap into the internal fragment, CNBr III. The sequence of CNBr VI was completed through analysis of peptides derived from hydrolysis of the fragment with trypsin and chymotrypsin. Structural analysis of CNBr III has provided the sequence of the first 55 amino acids in this 103-residue fragment. The sequence was established by conventional and automated procedures applied to the analysis of tryptic peptides generated from the citraconylated fragment. These findings constitute the sequence of the first 100 residues in the pyrophosphatase subunit and, together with structural information obtained earlier, define over half of the covalent structure of the molecule. Moreover, the sequence derived thus far permits the placement of a number of amino acids that are of importance relative to studies of the enzyme mechanism, and with regard to analysis of its three-dimensional structure.     

An effect of mate fertility on the attractiveness and oviposition rates of mated Drosophila melanogaster females

Mate fertility has a strong influence on the sexual receptivity of mated Drosophila melanogaster females, but an effect of mate fertility on the attractiveness of mated females has not previously been demonstrated. We compared the declines in attractiveness over the first 10 h after mating for females mated to fertile (XY) males and those mated to sterile (XO) males, and found a significant effect of mate fertility. A large and significant decrease in attractiveness, that is the same for both XY- and XO-mated females, is evident during the first 4 h after mating. However, a further decline in attractiveness occurs between 4 and 6 h after mating for XY-mated females, but not until between 6 and 10 h after mating for females with sterile mates. Thus, XY-mated females are significantly less attractive than XO-mated females at 6–8 h post-mating, but not at any other time. A sharp increase in oviposition rates for both types of mated females is associated with the decline in attractiveness that occurs between 4 and 10 h after mating.     

An improved method for preparing large arrays of bacterial colonies containing plasmids for hybridization: In situ purification and stable binding of DNA on paper filters

An improved procedure is presented for the binding to filter paper and subsequent purification of DNA from plasmid-containing bacterial colonies. The procedure includes treatments with NaOH, enzymatic digestion, and organic solvent extraction of the filter-bound DNA. This method allows isolation of DNA in a reusable form from thousands of colonies in several hours. Double-labeling experiments with [³H]thymidine and [¹⁴C]proline indicated that (i) during purification the DNA:protein ratio is increased several hundredfold; (ii) little or no DNA is lost during the procedure; (iii) the resultant purified DNA is tenaciously bound to the paper. Thus, the final filter-bound DNA allows multiple sequential hybridizations of different probes to one filter.     

Source and target cell specificities of a conditioned medium factor that increases choline acetyltransferase activity in cultured spinal cord cells

A macromolecular factor(s) in muscle conditioned medium (CM), when applied to spinal cord (SC) cells in culture, causes large increases in the activity of choline acetyltransferase (CAT), the enzyme which synthesizes the neurotransmitter acetylcholine. We have found apparent specificity of both species and cell type for the production, release, or action of this CAT stimulation component (CSC). Rat and mouse muscle CMs contained CSC which was active in mouse SC cells; chick muscle CM did not. In addition to muscle CM, the CM from cell cultures of mouse heart, liver, and kidney contained CSC. However, CM from secondary cultures of liver cells contained little if any CSC. These apparent specificities were not due to differences in the protein content of either the cells providing CM or of the CM itself. There was also apparent specificity of response to CSC among cholinergic cells in culture. Cultures of cells from only two of four regions of the mouse central nervous system, and from one of five neuronal cell lines tested, had increased CAT activity after treatment with muscle CM. The response in NG108-15 neuroblastoma-glioma hybrid cells was further characterized, and was used to develop a more convenient and rapid assay for CSC.     

Location of iron in the Fe2+-bleomycin complex as observed by 13C NMR spectroscopy.

The antineoplastic action of bleomycin is currently thought to arise from the degradation of cellular DNA by the iron-bleomycin complex. Bleomycin A₂ has one iron binding site as revealed by the iron-titrations of bleomycin monitored optically. To probe the structure of the Fe²⁺-bleomycin complex, we studied the paramagnetic effects of its high spin ferrous iron on the nuclear relaxation rates ($\text{1}\text{T}{}_1$) of the natural abundance carbon-13 atoms in the molecule. The presence of Fe²⁺ in bleomycin predominantly enhances the $\text{1}\text{T}{}_1$ of only four protonated carbon atoms in the molecule (C2, C3, C5, and C6). No other protonated carbon atoms are affected significantly. From the magnitudes of the paramagnetic effects of Fe²⁺ on the ¹³C relaxation rates, we obtain distances of 3.6, 4.1, 4.0, and 3.6 Å from the metal to the C2, C3, C5, and C6 carbon atoms, respectively. These results are consistent with the metal ion-chelation of the α-amino group of the terminal diaminopropionic acid residue and the pyrimidine ring but do not implicate any other parts of the bleomycin molecule in binding to iron.     

Isolation and characterization of acetylornithine delta-transaminase of wild-type Escherichia coli W. Comparison with arginine-inducible acetylornithine delta-transaminase.

The enzyme that catalyzes the reversible conversion of N-acetylglutamic γ-semialdehyde and l-glutamate to α-N-acetyl-l-ornithine and α-ketoglutarate, acetylornithine δ-transaminase, has been isolated in homogeneous form and crystallized from both the wild-type and the arginine-inducible strains of Escherichia coli W. The molecular weight of the wild-type transaminase is 119,000 while the molecular weight of the arginine-inducible enzyme is 61,000. However, the arginine-inducible acetylornithine δ-transaminase is not a breakdown product of the wild-type, arginine-repressible transaminase. Analysis of crude extracts of the wild-type and arginine-inducible strains by varying the acrylamide concentration in polyacrylamide disc gel electrophoresis showed that arginine-inducible and wild-type transaminases differed in ionic charge. Immunochemical analysis of the two transaminases showed that neither enzyme would cross-react with antibodies prepared against its counterpart. Treatment of the two enzymes with sodium dodecyl sulfate, followed by disc gel electrophoresis revealed that both transaminases were composed of 31,000-dalton subunits. Tryptic digestion of the two transaminases showed that nearly identical peptides were present. The overall data suggest that the wild-type and inducible transaminases were products of two different structural genes. The two transaminases have different molecular weights, ionic charges, and antigenic determinants, but both are composed of similar molecular weight subunits and show a high degree of similarity in amino acid content and peptide composition.     

An expandable gene that encodes a Drosophila glue protein is not expressed in variants lacking remote upstream sequences

The Drosophila melanogaster gene Sgs4 encodes one of the glue polypeptides, sgs-4, synthesized in the larval salivary gland. We have examined the structure and expression of Sgs4 in five strains that produce abundant amounts of sgs-4 and its mRNA and in four that do not. The nonproducers include three Japanese strains that accumulate trace amounts of mRNA and one strain, BER-1, that contains no detectable Sgs4 RNA. Sgs4 carries a tandem array of repeated 21 bp elements within its coding sequence. The number of elements per array varies, causing considerable differences in the lengths of Sgs4 and its mRNA among the strains. These differences in length are not correlated with differences in mRNA abundance; rather, the low or zero abundance in nonproducers correlates with the loss of DNA upstream from the gene. The Japanese nonproducers carry a 52 bp deletion 305 bp upstream from the 5′ end of Sgs4, and BER-1 carries a 95 bp deletion 392 bp upstream. Curiously, each deletion encompasses one or more of the salivary-gland-specific DNAase I-hypersensitive sites which are known to flank the Sgs4 gene.     

The use of mini-Gal plasmids for rapid incompatibility grouping of conjugative R plasmids

The galactose operon of Escherichia coli K-12 has been used as a phenotypic marker for miniplasmids derived in vitro from R plasmids representing six incompatibility groups. This has enabled the development of a rapid incompatibility typing scheme in which the miniplasmids are used as incompatibility exemplars, their presence in strains being monitored on galactose fermentation indicator media.     

Control of replication of FII plasmids: comparison of the basic replicons and of the copB systems of plasmids R100 and R1

The copy numbers of the FII plasmids R1 and R100 were determined in four different ways and found to be identical. Deletion of one of the copy number control genes, copB, together with its promoter gives rise to plasmid copy mutants with an increased copy number. The increase was found to be 8- and 3.5-fold for plasmids R1 and R100, respectively. These deletion derivatives were found to be extremely sensitive to the presence of CopB activity from their own parent plasmid but not to that of the other plasmid. Hence, the CopB protein and its target are plasmid-specific and not FII-group-specific. These results are consistent with the high degree of nonhomology between plasmids R1 and R100 in a 250-bp region covering the distal part of the copB gene and the repA promoter region, which contains the target for the CopB protein.     

Survival and function of bursa-derived cells in bursectomized chickens

Chicken given heterologous antibodies to μ chains as embryos and again following bursectomy at hatching were rendered permanently agammaglobulinemic, whereas treatment with anti-μ alone resulted in transient hypogammaglobulinemia. These and other observations indicate that sites other than the bursa of Fabricius are unable to serve as sources of immunoglobulin-producing cells. Agammaglobulinemia did not develop in birds bursectomized at 1, 14, or 35 days after hatch during an observation period of 21–125 wk. Some bursectomized birds developed 10 × normal IgM levels but were very deficient in IgG; this pattern persisted throughout life. B lymphocytes, identified by surface immunoglobulins in high density, were permanently deficient in bursectomized animals despite development of hypergammaglobulinemia and high levels of antibodies to ferritin following hyperimmunization. In experiments employing embryonic bursectomy, the level of the circulating pool of B lymphocytes was shown to be dependent upon the time allowed for the bursa to function before removal.     

Persistence of exogenous, inserted ganglioside GM1 on the cell surface of cultured cells

Ganglioside GM₁, which can insert spontaneously into the membrane of intact cells, has been measured after insertion into transformed fibroblasts by cholera toxin (choleragen) binding, for which ganglioside GM₁ is the natural receptor. Choleragen binding is not altered in starved, quiescent cells over a four-day period. Dividing cells show decreased binding in proportion to cell division. Thus, neither dividing nor quiescent cells appear to metabolize or otherwise degrade this membrane component.     

Evidence that the Mg-ATPase in the cortical layer of sea urchin egg is dynein

Indirect immunofluorescence staining of cleaving sea urchin eggs with an antiserum against a tryptic fragment of dynein 1 (fragment 1A) from sea urchin sperm flagella suggested the presence of dynein in the cortex as well as in the mitotic apparatus. In the present study, we found that the Mg²⁺-ATPase activity of the isolated cortices from sea urchin eggs, which exhibited similar characteristics to those of flagellar dynein, was inhibited by 60–80% with the anti-fragment 1A serum. Faintly stained bands corresponding to the A-band (dynein 1) and the B-band of the sperm flagella was detected on sodium dodecylsulfate (SDS)-polyacrylamide gel electrophoresis of the isolated cortices. Furthermore, the SDS-gel electrophoresis revealed the presence of a polypeptide band corresponding to dynein 1 in the antigen-antibody complex precipitated from the KCl-extract of the cortices with the antiserum.     

Studies on the role of lymphocyte-activating factor (Interleukin 1) in antigen-induced lymph node lymphocyte proliferation

The in vitro proliferation of primed lymph node lymphocytes (LNL) in response to the soluble antigen ovalbumin (OVA) was dependent upon the presence of adherent cells. Restoration of OVA-induced LNL proliferation could be achieved by addition of highly purified lymphocyte-activating factor (LAF; Interleukin 1, IL 1): LAF (IL 1) did not stimulate LNL proliferation in the absence of the priming antigen or T lymphocytes. Furthermore, treatment of the LNL with antimacrophage serum completely blocked the ability of the LNL to respond to OVA and LAF (IL 1), suggesting that the residual macrophages in the LNL population were necessary to provide an additional function or signal, possibly antigen presentation, in conjunction with LAF (IL 1). These data therefore support the two signal hypothesis of macrophage-mediated lymphocyte activation and demonstrate the ability of LAF (IL 1) to provide one of these signals.     

Testosterone potentiation of the effectiveness of ACTH1-24 on the induction of the stretch-yawning syndrome (SYS) in male guinea pigs

Ventricular administration of ACTH^1–24 stimulated stretch-yawning in castrated male guinea pigs in a dose-related manner. Daily subcutaneous treatment with testosterone propionate (TP) facilitated the effects of ACTH^1–24 on this response. TP given without ACTH^1–24 stimulated yawning, but not stretching or combined stretch-yawning. Unlike most other species, guinea pigs did not display auto-grooming, scratching, or wet-dog shaking in response to intracranial ACTH^1–24. The results suggest that testosterone may alter the sensitivity of neural mechanisms which are responsive to ACTH^1–24.     

Antiproliferative effect of interferon on a Burkitt''s lymphoma cell line

The effect of interferon (IF) on the growth of a Burkitt's lymphoma cell line was analysed. The degree of depression of cell doublings was the same if the cells were in a steady state mode of exponential growth or in a resting state (G0) when IF was added. As IF had a lag time of 24 h before decreased growth could be observed, cells in G0 did not seem to be more sensitive when growth was estimated by cell counts expressed as cell doublings. IF inhibited cells to proceed into the cell cycle and the possibility that IF may increase the escape into a G0 loop is discussed.