Caeoma tsukubaense n. sp., a rhododendron rust fungus of Japan and southern Asia, and its relationship to Chrysomyxa rhododendri

A rust fungus found in Japan on Rhododendron kaempferi, R. kiusianum, and R. dauricum has previously been identified as Chrysomyxa rhododendri. Light and scanning electron microscopy of fresh and herbarium materials of the rust fungus, however, show that the spore surface morphology differs from the urediniospores of C. rhododendri, and the spores are slightly smaller. Furthermore, the DNA sequence of the 5′-end of the large subunit of ribosomal DNA differs from that of C. rhododendri by 3%. Telia have not been found; therefore, it is redescribed as a new anamorphic species, Caeoma tsukubaense. Several specimens from North Korea, Tibet, and Nepal bearing a similar rust fungus are also included in the species.Contribution no.193 from the Laboratory of Plant Parasitic Mycology, Graduate School of Life and Environmental Sciences, University of Tsukuba, Japan     

Egg and clutch sizes of a goby Rhinogobius giurinus in the Aizu River, Kii Peninsula, Japan

Egg and clutch sizes, and gonad somatic index (GSI) at maturity of the amphidromous goby Rhinogobius giurinus were examined in the Aizu River, Wakayama Prefecture, Japan. The goby tended to have a larger clutch size, with smaller eggs, and matured at the lower GSI, compared with those in the three sympatric amphidromous species of R. brunneus complex. Higher water temperature and abundant food conditions may affect the optimal egg size in R. giurinus. Besides, higher larval survival rate during downstream migration may affect lower GSI at maturity in this goby that usually inhabits lower reaches of the river.     

Redescription ofRhinochimaera pacifica (mitsukuri) and first record ofR. africana compagno, stehmann & ebert from Japan (Chimaeriformes: Rhinochimaeridae)

Rhinochimaera pacifica is redescribed and a specimen from Tokyo Bay is designated as the neotype. A second species of the genus,R. africana, is newly recognized from Japan. A new scheme of measurements of the lateral line canals has been developed, and a comparison of proportional measurements of the snout width, eye length, and canal measurements clearly distinguishesR. pacifica andR. africana. Intraspecific variation ofR. pacifica and comparison ofR. pacifica andR. africana is discussed.Rhinochimaera pacifica has an irregular distribution in the north and south Pacific Ocean and Indian Ocean. This study also confirms a much wider range forR. africana than previously known and extends the range to the northern Pacific Ocean around the Japanese Archipelago.     

新疆地图衣属地衣分类学研究

该研究以新疆的地图衣科(Rhizocarpaceae)地图衣属(Rhizocarpon)100余份地衣标本为材料,通过形态解剖学观察、化学成分分析及分子学鉴定的方法了解新疆地图衣属地衣的物种多样性。结果表明:(1)鉴定出7种地图衣属地衣,包括1个中国新记录种,命名为淡黄色地图衣(R.atroflavescens),6个常见种分别是黑红地图衣(R.badioatrum)、灰地图衣(R.disporum)、双孢地图衣(R.geminatum)、地图衣(R.geographicum)、巨地图衣(R.grande)和岩表地图衣(R.superficiale)。(2)编制了新疆22种地图衣属地衣的分种检索表。(3)系统发育分析结果表明,新疆地图衣属地衣的分子鉴定与形态解剖特征结果一致,更准确地证明淡黄色地图衣为中国新记录种。(4)对已报道的新疆22种地图衣属地衣的地区分布及海拔分布统计显示,新疆22种地图衣属地衣在世界各地均有分布,其中亚洲分布最丰富;该22种地图衣属地衣从低海拔到高海拔都有分布,且各海拔高度物种分布不均匀,总体在高海拔地区分布的物种较多。     

矮石蕊在东亚的地位

中国和日本有关具粉末状粉芽的矮石蕊(Cladonia humilis)的报导大多数实际上是指本文中描述的新种,黑氏石蕊(Cladonia kurokawae Ahti & S. Stcnroos).其特征是杯体深裂,含有黑茶渍素和富马原岛衣酸.真正的矮石蕊在中国和日本是很少见的;日本的种类中,含有黑茶渍素和波衣酸的两个化学型都存在.     

Molecular variation of Spiranthes sinensis (Orchidaceae) in Japan, with special reference to systematic treatment of seasonally differentiated groups and a dwarf form, f. gracilis, from Yakushima Island

Molecular variations of Spiranthes sinensis Ames var. australis (R.Br.) H. Hara et Kitam. ex Kitam. in Japan were examined to evaluate the validity of the seasonally differentiated groups and a dwarf form of the species, which is endemic to Yakushima Island, Japan. Sequence differences in the plastid trnL-F locus clearly distinguished Japanese S. sinensis var. australis from S. sinensis var. sinensis collected from Ryukyu. In contrast, the trnL-F sequence of S. sinensis var. australis from Sabah, Malaysia, clearly differed from that of Japanese S. sinensis var. australis, suggesting genetic heterogeneity of Spiranthes sinensis var. australis in Asia. Moreover, a molecular analysis based on the sequences of nuclear ITS1 regions indicated that there are two major groups of S. sinensis var. australis in Japan, with a geographic distribution boundary on Kyushu Island. However, the trnL-F and ITS1 sequences did not support the genetic differentiation of the seasonally differentiated groups or the dwarf form from the other Japanese individuals. Based on these molecular data, the systematic treatment of physiological and morphological variations in the Japanese population of S. sinensis. var. australis is discussed.     

<Emphasis Type="Italic">Doederleinia gracilispinis</Emphasis> (Fowler, 1943), a junior synonym of <Emphasis Type="Italic">Doederleinia berycoides</Emphasis> (Hilgendorf, 1879), with review of the genus

A poorly known acropomatid, Rhomboserranus gracilispinis Fowler, 1943, was originally described on the basis of specimens from the Philippines. Since the recognition of Rhomboserranus as a junior synonym of Doederleinia, R. gracilispinis had been considered a valid species of Doederleinia. Examination of the holotype of R. gracilispinis and other type series of nominal species of Doederleinia showed them to be included in the single species D. berycoides (Hilgendorf, 1879). The sole representative of Doederleinia is distributed from Japan to northwestern Australia. This species is distinguishable from other acropomatids by the following combination of characters: head and body red; nine dorsal-fin spines; three anal-fin spines; no luminous organ; a row of conical teeth with a large canine tooth medially on lower jaw; large conical teeth on anterior part of outer margin with two or three large canine teeth on inner margin on upper jaw; and anus situated just anterior to origin of anal fin.     

Urogonimus macrostomus (Digenea: Leucochloridiidae) from the rustic bunting, Emberiza rustica, in Japan

Some trematodes were found in the cloaca of a rustic bunting (Emberiza rustica) captured in Tsushima Islands, Japan. From their morphological characters and distribution, the flukes were identified as Urogonimus macrostomus. The phylogenetic relationship between this fluke and related species was inferred from the 28S rRNA gene sequences, and the gene sequence of the fluke was found to differ at only 4 nucleotide positions from that of U. macrostomus reported from Ukraine. This is the first report of this species in Japan.     

头花杜鹃、陇蜀杜鹃及杜鹃属植物叶绿体基因组比较分析

头花杜鹃(Rhododendron capitatum)和陇蜀杜鹃(R. przewalskii)是极具观赏价值的野生花卉和药用植物。为探讨头花杜鹃和陇蜀杜鹃叶绿体基因组的遗传结构及进化特征,该研究利用 Illumina HiSeq 4000 平台对头花杜鹃和陇蜀杜鹃的叶绿体全基因组进行测序,经组装和注释后,结合 7 个已发表的杜鹃属植物叶绿体全基因组进行比较基因组学分析和系统发育分析。结果表明:(1)头花杜鹃和陇蜀杜鹃叶绿体全基因组呈典型的环状四分体结构,均由一个大单拷贝区(105 990、109 191 bp)、一个小单拷贝区(2 617、2 606 bp)和一对反向重复区(45 825、47 516 bp)构成,全长分别为200 257、206 829 bp。(2)头花杜鹃和陇蜀杜鹃叶绿体基因组中共鉴定出 263 个SSR位点,大部分 SSR 偏好使用 A/T 碱基,密码子偏好使用 A/U 结尾。(3)杜鹃属植物叶绿体全基因组中普遍存在基因丢失以及基因组重排等结构变异现象。该研究丰富了杜鹃属植物的基因组资源,为头花杜鹃、陇蜀杜鹃的资源开发、遗传进化、育种及系统发育相关研究提供了理论参考。     

Monilinia jezoensis sp. nov. in the Sclerotiniaceae, causing leaf blight and mummy fruit disease of Rhododendron kaempferi in Hokkaido, northern Japan

A new leaf blight and mummy fruit disease caused by a species of Monilinia was first found on Rhododendron kaempferi at the lakeside of Shikotsu-ko, Hokkaido, northern Japan, in 2002. Studies on morphology, life cycle, cultural characters, and gene analyses of the causal fungus enabled us to conclude that it is a new species of the genus. It is named M. jezoensis. Rhododendron is a new host genus for Monilinia fungi in Japan.     

Phellinus setifer sp. nov. andP. acontextus, two noteworthy polypores from temperate areas of Japan, with notes on their allies

Type examination ofTrametes gilvoides revealed that it is distinct from the fungus hitherto known asPhellinus gilvoides in Japan.Phellinus setifer sp. nov. is described for the Japanese materials. This species is characterized by effusedreflexed basidiocarps with strigose pileus surface, often dentate dissepiments, subulate setae, and cylindrical basidiospores.Phellinus acontextus, known only from the type material collected in Nepal, is newly reported from Japan. This species is characterized by sessile and often pendent basidiocarps with multisulcate pileus surface, very thin context, lack of setae, and dark-colored basidiospores. Cultural characters of the two species are also described.Phellinus acifer comb. nov. is proposed.Phellinus contiguus andP. ferreus are newly reported from Japan.     

The lipopolysaccharides of Rhodospirillum rubrum,Rhodospirillum molischianum,and Rhodopila globiformis

The cell wall lipopolysaccharides from three phototrophic species of the alpha₁-group of Proteobacteria, Rhodospirillum rubrum, Rhodospirillum molischianum, and Rhodopila globiformis were isolated and chemically characterized. Sodium deoxycholate polyacrylamide gel electrophoresis patterns revealed that the lipopolysaccharides of all three species possess O-chains. They are composed of repeating units only in R. molischianum and R. globiformis. The presence of l-glycero-d-mannoheptose and 2-keto-3-deoxyoctonate indicated core structures in all three lipopolysaccharides. Glucosamine was found as backbone amino sugar in lipid A of R. molischianum and R. rubrum, while R. globiformis has 2,3-diaminoglucose as backbone amino sugar. The latter species also differed from the two former ones in its content of hydroxy fatty acids (3-OH-14:0, 3-OH-16:0 in R. rubrum and R. molischianum and 3-OH-14:0, 3-OH-18:0 and 3-OH-19:0 (possibly iso- or anteisobranched) in R. globiformis).Abbreviations DOC-PAGE sodium deoxycholate polyacrylamide gel electrophoresis - GC/MS combined gas-liquid chromatography/mass spectrometry - KDO 2-keto-3-deoxyoctonate     

Mycena auricoma,a new species ofMycena sectionRadiatae from Japan,andMycena spinosissima,a new record in Japan

Two lignicolous species ofMycena (Agaricales, Basidiomycetes) are described and illustrated from eastern, Japan:Mycena auricoma sp. nov., forming ephemeral coprinoid basidiomata and belonging to sectionRadiatae, was found on a dead fallen twig ofQuercus serrata. It appears to close to a Malaysian species,“Trogia” crinipelliformis. Mycena spinosissima in sectionSacchariferae, new to Japan, was collected from dead bark ofAphananthe aspera, a dead fallen inflorescence ofCryptomeria japonica, and a dead fallen twig ofQuercus serrata.     

Fennellia flavipes andNeosartorya stramenia,two new records from Japan

Two interesting species of cleistothecial Ascomycetes withAspergillus anamorphs are described:Fennellia flavipes andNeosartorya stramenia. Both species were isolated from soil smaples collected in 1992 as a new record to Japan.     

Phylogeny of Snub-Nosed Monkeys Inferred from Mitochondrial DNA,Cytochrome B,and 12S rRNA Sequences

Snub-nosed monkeys (Rhinopithecus spp.) are confined to isolated mountainous regions in China and North Vietnam. Their systematic classification and phylogenetic relationship has been controversial. The structures of mitochondrial DNA cytochrome b and 12S rRNA show that the 4 species of Rhinopithecus are quite different from other colobines. It is reasonable to regard them as an independent genus, as determined by external features, morphometric characters and behavior. However, whether or not there should be a subdivision between the Vietnamese and Chinese species at the subgeneric level remains to be clarified; more evidence from a large range of Asian colobine species is needed. The Guizhou species, Rhinopithecus brelichi, is a valid species, which is more closely related to Pygathrix than the other species ( R. roxellana, R. bieti and R. avunculus) are. Results also indicate that 3 species—Rhinopithecus roxellana, R. bieti and R. avunculus—might have diverged from R. brelichi, but the phylogenetic relationship of R. avunculus is not clear.     

Symphurus hondoensis Hubbs, 1915, a valid species of western Pacific tonguefish (Pleuronectiformes: Cynoglossidae)

Symphurus hondoensis Hubbs, 1915, originally described only from the holotype taken in 390–542 m in Suruga Bay Japan, has long been considered a junior synonym ofS. strictus Gilbert, 1905, known from waters off Hawaii, Japan, the Philippine Islands, and South Africa. Based on new information from the holotype and a specimen recently captured from deep waters (789–815 m) off Amami-Oshima Island, southern Japan,S. hondoensis is now established as a valid species.Symphurus hondoensis is unique among congeners in having the combination of a 1–2–3 pattern of interdigitation of proximal dorsal pterygiophores and neural spines, 10 abdominal vertebrae, 14 caudalfin rays, 111–113 dorsal-fin rays, 95 anal-fin rays, 59 total vertebrae, 105–106 scales in longitudinal series, blind side nearly as darkly pigmented as the ocular surface, and a black peritoneum. Recognition ofS. hondoensis increases the number of described species ofSymphurus in waters off Japan to three (S. orientalis Bleeker,S. strictus, andS. hondoensis), with at least one more underscribed species occurring in deepwater hydrothermal vent areas off southern Japan.     

Chromosome numbers of European blackberries (Rubus subg.Rubus,Rosaceae)

Chromosome numbers are presented for 32 collections of 29 European blackberry species (Rubus subg.Rubus) from Germany. One species is triploid (2n = 21), 27 species are tetraploid, (2n = 28), and one species is pentaploid (2n = 35). Chromosome numbers are reported for the first time ofR. adspersus, R. amisiensis, R. calvus, R. conothyrsoides, R. contractipes, R. demissus, R. elegantispinosus, R. ferocior, R. foliosus, R. hypomalacus, R. leucandrus, R. nemorosus, R. platyacanthus, R. praecox, R. rhombifolius, andR. rhytidophyllus. Chromosome numbers forR. dasyphyllus, R. gelertii, R. glandithyrsos, R. lamprocaulos, R. lindebergii, R. macrophyllus, R. montanus, R. muenteri, R. pedemontanus, R. polyanthemus, R. senticosus, R. silvaticus, andR. vigorosus are confirmed.