Food web modularity and biodiversity promote species persistence in polluted environments

Pollution represents a major threat to biodiversity. A wide class of pollutants tends to accumulate within organisms and propagate within communities via trophic interactions. Thus the final effects of accumulable pollutants may be determined by the structure of food webs and not only by the susceptibility of their constituent species. Species within real food webs are typically arranged into modules, which have been proposed to be determinants of network stability. In this study we evaluate the effect of network modularity and species richness on long‐term species persistence in communities perturbed by pollutant stress. We built model food webs with different levels of modularity and used a bioenergetic model to project the dynamics of species. Further, we modeled the dynamics of bioaccumulated and environmental pollutants. We found that modularity promoted the stability of food webs subjected to pollutant stress. We also found that richer food webs were more robust at all modularity levels. Nevertheless, modularity did not promote stability of communities facing a perturbation that shared most features with the pollutant perturbation, but does not spread through trophic interactions. The positive effect of both modularity and species richness on species persistence was cancelled and even reversed when the structure of food web departed from a realistic body size distribution or a hierarchical feeding structure. Our results support the idea that modularity implies important dynamic consequences for communities facing pollution, highlighting a main role of network structure on ecosystem stability.     

Erosion of community diversity and stability by herbivore removal under warming

Climate change has the potential to influence the persistence of ecological communities by altering their stability properties. One of the major drivers of community stability is species diversity, which is itself expected to be altered by climate change in many systems. The extent to which climatic effects on community stability may be buffered by the influence of species interactions on diversity is, however, poorly understood because of a paucity of studies incorporating interactions between abiotic and biotic factors. Here, I report results of a 10-year field experiment, the past 7 years of which have focused on effects of ongoing warming and herbivore removal on diversity and stability within the plant community, where competitive species interactions are mediated by exploitation through herbivory. Across the entire plant community, stability increased with diversity, but both stability and diversity were reduced by herbivore removal, warming and their interaction. Within the most species-rich functional group in the community, forbs, warming reduced species diversity, and both warming and herbivore removal reduced the strength of the relationship between diversity and stability. Species interactions, such as exploitation, may thus buffer communities against destabilizing influences of climate change, and intact populations of large herbivores, in particular, may prove important in maintaining and promoting plant community diversity and stability in a changing climate.     

Interactions among mutualism,competition, and predation foster species coexistence in diverse communities

In natural systems, organisms are simultaneously engaged in mutualistic, competitive, and predatory interactions. Theory predicts that species persistence and community stability are feasible when the beneficial effects of mutualisms are balanced by density-dependent negative feedbacks. Enemy-mediated negative feedbacks can foster plant species coexistence in diverse communities, but empirical evidence remains mixed. Disparity between theoretical expectations and empirical results may arise from the effects of mutualistic mycorrhizal fungi. Here, we build a multiprey species/predator model combined with a bidirectional resource exchange system, which simulates mutualistic interactions between plants and fungi. To reach population persistence, (1) the per capita rate of increase of all plant population must exceed the sum of the negative per capita effects of predation, interspecific competition, and costs of mycorrhizal association, and (2) the per capita numerical response of enemies to mycorrhizal plants must exceed the magnitude of the per capita enemy rate of mortality. These conditions reflect the balance between regulation and facilitation in the system. Interactions between plant natural enemies and mycorrhizal fungi lead to shifts in the strength and direction of net mycorrhizal effects on plants over time, with common plant species deriving greater benefits from mycorrhizal associations than rare plant species.     

The role of seasonal timing and phenological shifts for species coexistence

Shifts in the phenologies of coexistence species are altering the temporal structure of natural communities worldwide. However, predicting how these changes affect the structure and long‐term dynamics of natural communities is challenging because phenology and coexistence theory have largely proceeded independently. Here, I propose a conceptual framework that incorporates seasonal timing of species interactions into a well‐studied competition model to examine how changes in phenologies influence long‐term dynamics of natural communities. Using this framework I demonstrate that persistence and coexistence conditions strongly depend on the difference in species’ mean phenologies and how this difference varies across years. Consequently, shifts in mean and interannual variation in relative phenologies of species can fundamentally alter the outcome of interactions and the potential for persistence and coexistence of competing species. These effects can be predicted by how per‐capita effects scale with differences in species’ phenologies. I outline how this approach can be parameterized with empirical systems and discuss how it fits within the context of current coexistence theory. Overall, this synthesis reveals that phenology of species interactions can play a crucial yet currently understudied role in driving coexistence and biodiversity patterns in natural systems and determine how species will respond to future climate change.     

Compartments in a marine food web associated with phylogeny, body mass, and habitat structure

A long-standing question in community ecology is whether food webs are organized in compartments, where species within the same compartment interact frequently among themselves, but show fewer interactions with species from other compartments. Finding evidence for this community organization is important since compartmentalization may strongly affect food web robustness to perturbation. However, few studies have found unequivocal evidence of compartments, and none has quantified the suite of mechanisms generating such a structure. Here, we combine computational tools from the physics of complex networks with phylogenetic statistical methods to show that a large marine food web is organized in compartments, and that body size, phylogeny, and spatial structure are jointly associated with such a compartmentalized structure. Sharks account for the majority of predatory interactions within their compartments. Phylogenetically closely related shark species tend to occupy different compartments and have divergent trophic levels, suggesting that competition may play an important role structuring some of these compartments. Current overfishing of sharks has the potential to change the structural properties, which might eventually affect the stability of the food web.     

Diversity in a complex ecological network with two interaction types

Most studies on ecological networks consider only a single interaction type (e.g. competitive, predatory or mutualistic), and try to developrules for system stability based exclusively on properties of this interaction type. However, the stability of ecological networks may be more dependent on the way different interaction types are combined in real communities. To address this issue, we start by compiling an ecological network in the Doñana Biological Reserve, southern Spain, with 390 species and 798 mu-tualistic and antagonistic interactions. We characterize network structure by looking at how mutualistic and antagonistic interactions are combined across all plant species. Both the ratio of mutualistic to antagonistic interactions per plant, and the number of basic modules with an antagonistic and a mutualistic interaction are very heterogeneous across plant species, with a few plant species showing very high values for these parameters. To assess the implications of these network patterns on species diversity, we study analytically and by simulation a model of this ecological network. We find that the observed correlation between strong interaction strengths and high mutualistic to antagonistic ratios in a few plant species significantly increases community diversity. Thus, to predict the persistence of biodiversity we need to understand how interaction strength and the architecture of ecological networks with different interaction types are combined.     

The cryptic role of biodiversity in the emergence of host–microbial mutualisms

The persistence of mutualisms in host‐microbial – or holobiont – systems is difficult to explain because microbial mutualists, who bear the costs of providing benefits to their host, are always prone to being competitively displaced by non‐mutualist ‘cheater’ species. This disruptive effect of competition is expected to be particularly strong when the benefits provided by the mutualists entail costs such as reduced competitive ability. Using a metacommunity model, we show that competition between multiple cheaters within the host's microbiome, when combined with the spatial structure of host–microbial interactions, can have a constructive rather than a disruptive effect by allowing the emergence and maintenance of mutualistic microorganisms within the host. These results indicate that many of the microorganisms inhabiting a host's microbiome, including those that would otherwise be considered opportunistic or even potential pathogens, play a cryptic yet critical role in promoting the health and persistence of the holobiont across spatial scales.     

The may-wigner stability theorem

We provide heuristic arguments and a simple, self-contained proof of May's (1972) stability theorem for randomly assembled linear systems. See also Gardner & Ashby's (1970) simulation results. Our argument is easily modified to handle typical ecological constraints (May, 1974; Lawlor, 1978) on community interaction matrices. In complex systems, our argument suggests that weak interactions with many species (high C, low α) are favored over strong interactions with few species (low C, high α). This partially resolves the “rocky intertidal paradox” (May, 1979; Murdock, 1979) by explaining overall structure in this intensely competitive community.     

Effect of habitat degradation on competition,carrying capacity,and species assemblage stability

Changes in species’ trophic niches due to habitat degradation can affect intra‐ and interspecific competition, with implications for biodiversity persistence. Difficulties of measuring species’ interactions in the field limit our comprehension of competition outcomes along disturbance gradients. Thus, information on how habitat degradation can destabilize food webs is scarce, hindering predictions regarding responses of multispecies systems to environmental changes. Seagrass ecosystems are undergoing degradation. We address effects of Posidonia oceanica coverage reduction on the trophic organization of a macroinvertebrate community in the Tyrrhenian Sea (Italy), hypothesizing increased trophic generalism, niche overlap among species and thus competition and decreased community stability due to degraded conditions. Census data, isotopic analysis, and Bayesian mixing models were used to quantify the trophic niches of three abundant invertebrate species, and intra‐ and interspecific isotopic and resource‐use similarity across locations differing in seagrass coverage. This allowed the computation of (1) competition strength, with respect to each other and remaining less abundant species and (2) habitat carrying capacity. To explore effects of the spatial scale on the interactions, we considered both individual locations and the entire study area (“‘meadow scale”). We observed that community stability and habitat carrying capacity decreased as P. oceanica coverage declined, whereas niche width, similarity of resource use and interspecific competition strength between species increased. Competition was stronger, and stability lower, at the meadow scale than at the location scale. Indirect effects of competition and the spatial compartmentalization of species interactions increased stability. Results emphasized the importance of trophic niche modifications for understanding effects of habitat loss on biodiversity persistence. Calculation of competition coefficients based on isotopic distances is a promising tool for describing competitive interactions in real communities, potentially extendible to any subset of ecological niche axes for which specimens’ positions and pairwise distances can be obtained.     

Grazing weakens temporal stabilizing effects of diversity in the Eurasian steppe

Many biodiversity experiments have demonstrated that plant diversity can stabilize productivity in experimental grasslands. However, less is known about how diversity–stability relationships are mediated by grazing. Grazing is known for causing species losses, but its effects on plant functional groups (PFGs) composition and species asynchrony, which are closely correlated with ecosystem stability, remain unclear. We conducted a six‐year grazing experiment in a semi‐arid steppe, using seven levels of grazing intensity (0, 1.5, 3.0, 4.5, 6.0, 7.5, and 9.0 sheep per hectare) and two grazing systems (i.e., a traditional, continuous grazing system during the growing period (TGS), and a mixed one rotating grazing and mowing annually (MGS)), to examine the effects of grazing system and grazing intensity on the abundance and composition of PFGs and diversity–stability relationships. Ecosystem stability was similar between mixed and continuous grazing treatments. However, within the two grazing systems, stability was maintained through different pathways, that is, along with grazing intensity, persistence biomass variations in MGS, and compensatory interactions of PFGs in their biomass variations in TGS. Ecosystem temporal stability was not decreased by species loss but rather remain unchanged by the strong compensatory effects between PFGs, or a higher grazing‐induced decrease in species asynchrony at higher diversity, and a higher grazing‐induced increase in the temporal variation of productivity in diverse communities. Ecosystem stability of aboveground net primary production was not related to species richness in both grazing systems. High grazing intensity weakened the temporal stabilizing effects of diversity in this semi‐arid grassland. Our results demonstrate that the productivity of dominant PFGs is more important than species richness for maximizing stability in this system. This study distinguishes grazing intensity and grazing system from diversity effects on the temporal stability, highlighting the need to better understand how grazing regulates ecosystem stability, plant diversity, and their synergic relationships.     

The effects of species properties and community context on establishment success

Understanding whether factors important for species establishment in a local community are predictable or context‐ dependent is key for determining the features that affect community stability and species coexistence. A major challenge for scientists addressing this question is that natural systems are complex. This makes it difficult to test multiple properties of species and features of the resident community simultaneously to determine what factors are most important for establishment success of a species into a novel community. We used the model aquatic system inside the leaves of the pitcher plant Sarracenia purpurea to test whether properties predicted to be important for establishment success of a species (initial density, competitive ability, body size) are generalizable across communities varying in resource availability and the presence of a top predator. For intermediate trophic‐level species, we found that both competitive dominance and initial density were important for establishment success. Although a less competitive species was also able to successfully establish in the communities, high resource availability and high initial density were important for its establishment success. Body size of the introduced species, although correlated with competitive ability, was not an important characteristic for establishment success. The presence of a top predator significantly decreased the densities of the introduced species when resources were low, but did not completely inhibit establishment success. The relative importance of each of these factors, and interactions among them, could not have been discerned through single hypothesis testing. The results from this work show the need for detailed experiments that focus on combinations of factors to understand if mechanisms determining community assembly and species establishment can be generalized across systems.     

INTERSPECIFIC COMPETITIVE INTERACTIONS AND THE MAINTENANCE OF GENOTYPIC VARIATION WITHIN TWO PERENNIAL GRASSES

Theoretical models predict that natural selection acting through competitive interactions should lead to increased divergence in resource use and to more equal competitive abilities among different genotypes. The consequent overcompensatory interactions and similar competitive abilities will favor maintenance of genotypic diversity. In field experiments we found that naturally co-occurring genotypes of two perennial grasses, Danthonia spicata and Anthoxanthum odoratum, differed in interspecific competitive performance. The competitive performance of a given genotype often depended on the genotypic identity of the competing species, especially in Danthonia spicata. Both overcompensatory and undercompensatory interactions were found, but neither was prevalent for both species. These data indicate that interactions between species are complex and have an important genetic component. The results from this experiment are compatible with a competitive explanation for the maintenance of genetic variation, but the persistence of weakly competitive genotypes cannot be explained.     

非自治Lotka—Volterra型竞争系统的一些新结果

研究一般非自治 Ｌｏｔｋａ－Ｖｏｌｔｅｒｒａ型 ｎ个种群相互竞争生态系统的定性性质．建立了关于一部分种群灭绝，而另一部分种群一致持续生存与全局渐近稳定的一系列新的判别准则．这些结果改进和推广了文献［２，３］中的主要结果。     

具反馈控制的两种群竞争系统的持续生存性与周期解

讨论了一类具反馈控制的两种群竞争模型,获得了其存在唯一,全局渐近稳定周期解的充分条件。     

Rapid contemporary evolution and clonal food web dynamics

Character evolution that affects ecological community interactions often occurs contemporaneously with temporal changes in population size, potentially altering the very nature of those dynamics. Such eco-evolutionary processes may be most readily explored in systems with short generations and simple genetics. Asexual and cyclically parthenogenetic organisms such as microalgae, cladocerans and rotifers, which frequently dominate freshwater plankton communities, meet these requirements. Multiple clonal lines can coexist within each species over extended periods, until either fixation occurs or a sexual phase reshuffles the genetic material. When clones differ in traits affecting interspecific interactions, within-species clonal dynamics can have major effects on the population dynamics. We first consider a simple predator–prey system with two prey genotypes, parametrized with data from a well-studied experimental system, and explore how the extent of differences in defence against predation within the prey population determine dynamic stability versus instability of the system. We then explore how increased potential for evolution affects the community dynamics in a more general community model with multiple predator and multiple prey genotypes. These examples illustrate how microevolutionary ‘details’ that enhance or limit the potential for heritable phenotypic change can have significant effects on contemporaneous community-level dynamics and the persistence and coexistence of species.     

Modeling spatiotemporal dynamics of krill aggregations: size,intensity, persistence,and coherence with seabirds

Understanding aggregation dynamics of forage species is important for evaluating biophysical scaling in marine ecosystems and heterogeneity of trophic interactions. In particular, zooplankton aggregations are fundamental units of many pelagic systems, but are difficult to observe continuously through space and time. Using an established modeling framework that encompasses a coupled regional oceanographic and individual‐based modeling system, we test the hypothesis that persistence (duration) of krill aggregations is dependent on their size, intensity, and location of formation within the coastal upwelling region of the California Current. In support of this hypothesis, we found that aggregation size is positively related to intensity, whereas persistence has a parabolic response to aggregation size and intensity, indicating the likelihood that large and highly persistent aggregations are rare. Persistence of krill aggregations also depends on formation location within coastal upwelling areas. We found that krill aggregations were more likely to form near a major seabird colony and that some coastal upwelling areas act as sources of aggregations for other areas. Observations of seabird aggregations were used to evaluate the potential structural realism of predicted krill aggregations. Seabird aggregations displayed marked coherence with predicted krill aggregations in space, providing important criteria on the scaling and availability of krill aggregations to breeding and migratory species. Predicting scales of krill aggregation dynamics will benefit ecosystem assessments, and numerical modeling of predator foraging and marine spatial management aimed at ensuring protection of ecologically important areas.     

Factors influencing the composition of mixed populations of a hemiclonal hybrid and its sexual host

Hemiclonal/hybridogenetic hybrids combine demographic superiority of asexuals and genetic diversity of sexuals, but their need for backcrossing with a parental species tightly couples them with this sexual host. How can systems like this persist in ecological and evolutionary time? Two discrete‐time mathematical models describing the complex life cycle and mating system of hybridogenetic waterfrogs (Rana esculenta) identified four factors and their interactions as important. Although female mating preferences, in combination with differences in fecundity, determine species coexistence, differences in larval competitiveness seem to be more important for the hybrid‘s actual frequency. However, coexistence is possible even when host and hybrid are equally fecund and competitive. Dispersal and competition interact in their influence on species composition, but ecological and reproductive dispersal has opposing effects. In ecological terms our results explain the remarkable stability of observed species ratios over time within natural hybridogenetic populations, and indicate why the species composition can vary so widely between localities. In evolutionary terms they explain the old age of these and other hybridogenetic systems. They also suggest interesting consequences for other tightly coupled systems.     

Diversity and coexistence are influenced by time‐dependent species interactions in a predator–prey system

Although numerous studies show that communities are jointly influenced by predation and competitive interactions, few have resolved how temporal variability in these interactions influences community assembly and stability. Here, we addressed this challenge in experimental microbial microcosms by employing empirical dynamic modelling tools to: (1) detect causal interactions between prey species in the absence and presence of a predator; (2) quantify the time‐varying strength of these interactions and (3) explore stability in the resulting communities. Our findings show that predators boost the number of causal interactions among community members, and lead to reduced dynamic stability, but higher coexistence among prey species. These results correspond to time‐varying changes in species interactions, including emergence of morphological characteristics that appeared to reduce predation, and indirectly facilitate growth of predator‐susceptible species. Jointly, our findings suggest that careful consideration of both context and time may be necessary to predict and explain outcomes in multi‐trophic systems.     

Dissecting the role of transitivity and intransitivity on coexistence in competing species networks

It is well established that intransitively assembled interaction networks can support the coexistence of competing species, while transitively assembled (hierarchical) networks are prone to species loss through competitive exclusion. However, as the number of species grows, the complexity of ecological interaction networks grows disproportionately, and species can get involved simultaneously in transitive and intransitive groups of interactions. In such complex networks, the effects of intransitivity on species persistence are not straightforward. Dissecting networks into intransitive/transitive components can help us to understand the complex role that intransitivity may play in supporting species diversity. We show through simulations that those species participating in the largest group of intransitive interactions (the core of the network) have high probabilities of persisting in the long term. However, participation in a group of intransitive interactions other than the core does not always improve persistence. Likewise, participating in transitive interactions does not always decrease persistence because certain species (the satellites) transitively linked to the core have also a high persistence probability. Therefore, when networks contain transitive and intransitive structures, as it can be expected in real ecological networks, the existence of a large intransitive core of species can have a disproportionate positive effect on species richness.     

Do rabbits eat voles? Apparent competition,habitat heterogeneity and large‐scale coexistence under mink predation

Habitat heterogeneity is predicted to profoundly influence the dynamics of indirect interspecific interactions; however, despite potentially significant consequences for multi-species persistence, this remains almost completely unexplored in large-scale natural landscapes. Moreover, how spatial habitat heterogeneity affects the persistence of interacting invasive and native species is also poorly understood. Here we show how the persistence of a native prey (water vole, Arvicola terrestris ) is determined by the spatial distribution of an invasive prey (European rabbit, Oryctolagus cuniculus ) and directly infer how this is defined by the mobility of a shared invasive predator (American mink, Neovison vison ). This study uniquely demonstrates that variation in habitat connectivity in large-scale natural landscapes creates spatial asynchrony, enabling coexistence between apparent competitive native and invasive species. These findings highlight that unexpected interactions may be involved in species declines, and also that in such cases habitat heterogeneity should be considered in wildlife management decisions.