Genetic identification of five strongyle nematode parasites in wild african elephants (Loxodonta africana)

African savannah elephants (Loxodonta africana) are an ecologically and economically important species in many African habitats. However, despite the importance of elephants, research on their parasites is limited, especially in wild populations. Currently, we lack genetic tools to identify elephant parasites. We present genetic markers from ribosomal DNA (rDNA) and mitochondrial DNA (mtDNA) to identify five elephant-specific nematode parasites in the family Strongylidae: Murshidia linstowi, Murshidia longicaudata, Murshidia africana, Quilonia africana, and Khalilia sameera. We collected adult nematodes from feces deposited by wild elephants living in Amboseli National Park, Kenya. Using both morphologic and genetic techniques, we found that the internal transcribed spacer (ITS) region in rDNA provides a reliable marker to distinguish these species of strongyles. We found no evidence for cryptic genetic species within these morphologic species according to the cox-1 region of mtDNA. Levels of genetic diversity in strongyles from elephants were consistent with the genetic diversity seen within other strongyle species. We anticipate that these results will be a useful tool for identifying gastrointestinal nematode parasites in elephants.     

西双版纳勐海县勐阿水库对亚洲象迁移活动和人—象冲突的潜在影响

2020年1—12月,采用半结构式访查法、痕迹跟踪调查法和无人机跟踪调查法相结合的方法,对拟建西双版纳勐海县勐阿水库涉及区域的亚洲象种群结构、迁移路线等进行了调查,并采用样方法和3S技术对该区域亚洲象取食植物和栖息地适宜性进行了调查和分析,以探讨拟建勐阿水库可能对亚洲象迁移活动和人—象冲突的潜在影响。结果表明：(1)拟建勐阿水库区域活动的亚洲象小种群被称为澜沧江西部种群或西双版纳勐海—普洱澜沧种群,仅由19头亚洲象(10头雄性,9头雌性)组成,有2条亚洲象迁移路线穿越该区域;(2)在研究区域共统计到亚洲象取食植物12目19科32属33种,基本能满足该象群的取食需求;(3)海拔、坡度、植被隐蔽度及食物资源等生态因子的适宜性分析结果显示,大部分区域(包括占总面积14.61%的最适生境和占总面积82.05%的相对适宜生境)都能满足该亚洲象小种群的基本生活需求;(4)2条亚洲象迁移路线中的1条将因水库建设而阻断,迫使该象群改变原来的迁移路线;(5)水库淹没区的植被将被永久破坏,原本连片的适宜栖息地也将受到进一步切割和压缩影响;(6)当食物资源无法满足亚洲象生存需求时,它们可能会选择进入可在较短时间内获得大量食物的农耕区取食农作物和经济作物,随着人流、车流大量增加,亚洲象与人相遇的概率也会大幅度增加。分析认为,拟建勐阿水库将淹没1条迁移通道,对亚洲象迁移活动造成阻碍,迫使象群改变路线,还可能导致更为严重的人—象冲突。建议在水库工程设计和建设过程中采取有效的保护管理措施,减少工程项目对亚洲象种群及其栖息地的负面影响;水库建设和管理部门、林业和草原管理部门等应加强对亚洲象活动的监测和预警,避免亚洲象肇事造成人员伤亡和更大的经济损失。     

Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants

Conservation strategies for African elephants would be advanced by resolution of conflicting claims that they comprise one, two, three or four taxonomic groups, and by development of genetic markers that establish more incisively the provenance of confiscated ivory. We addressed these related issues by genotyping 555 elephants from across Africa with microsatellite markers, developing a method to identify those loci most effective at geographic assignment of elephants (or their ivory), and conducting novel analyses of continent-wide datasets of mitochondrial DNA. Results showed that nuclear genetic diversity was partitioned into two clusters, corresponding to African forest elephants (99.5% Cluster-1) and African savanna elephants (99.4% Cluster-2). Hybrid individuals were rare. In a comparison of basal forest "F" and savanna "S" mtDNA clade distributions to nuclear DNA partitions, forest elephant nuclear genotypes occurred only in populations in which S clade mtDNA was absent, suggesting that nuclear partitioning corresponds to the presence or absence of S clade mtDNA. We reanalyzed African elephant mtDNA sequences from 81 locales spanning the continent and discovered that S clade mtDNA was completely absent among elephants at all 30 sampled tropical forest locales. The distribution of savanna nuclear DNA and S clade mtDNA corresponded closely to range boundaries traditionally ascribed to the savanna elephant species based on habitat and morphology. Further, a reanalysis of nuclear genetic assignment results suggested that West African elephants do not comprise a distinct third species. Finally, we show that some DNA markers will be more useful than others for determining the geographic origins of illegal ivory. These findings resolve the apparent incongruence between mtDNA and nuclear genetic patterns that has confounded the taxonomy of African elephants, affirm the limitations of using mtDNA patterns to infer elephant systematics or population structure, and strongly support the existence of two elephant species in Africa.     

Minimum population size,genetic diversity,and social structure of the Asian elephant in Cat Tien National Park and its adjoining areas,Vietnam, based on molecular genetic analyses

Vietnam’s elephant population that has suffered severe declines during the past three decades is now believed to number 60–80 individuals in the wild. Cat Tien National Park is thought to be one of the key areas for the recovery of Vietnam’s elephants. We carried out a molecular genetic study of elephants in Cat Tien National Park and its adjoining areas with the objectives of estimating minimum population size, assessing genetic diversity, and obtaining insights into social organization. We obtained a minimum population size of 11 elephants based on a combination of unique nuclear microsatellite genotypes and mitochondrial haplotypes. While mitochondrial diversity based on a 600-base pair segment was high in this small sample of individuals, the six microsatellite loci examined showed low diversity and the signature of a recent population bottleneck. Along with nuclear genetic depauperation of Cat Tien’s elephants, we also report disruption of normal social organization, with different matrilines having coalesced into a single social group because of anthropogenic disturbance. The results emphasize the critical condition of this elephant population and the need for urgent conservation measures if this population is to be saved.     

Using genetic analysis to estimate population size,sex ratio,and social organization in an Asian elephant population in conflict with humans in Alur,southern India

With growing human and, possibly, elephant populations and a drastic increase in anthropogenic activities, human–elephant conflict in Asia has been on the rise. The Alur area in Karnataka state, southern India, is one such case in point, which has witnessed increasing levels of human–elephant conflict over the last two decades. The tiny, moderately protected habitat available for elephants in this human-dominated landscape does not appear to be able to support elephants over the long term. Options to deal with the escalating conflict include translocation of elephants, bringing elephants into captivity, and culling. We carried out a molecular genetic study of elephants in the Alur area to estimate the minimum number of elephants using the area, the sex ratio, genetic relatedness between individuals, and genetic structure with regard to the larger population in the landscape, so that informed management decisions could be made. Fresh dung samples were collected from the field and genotyped using 12 microsatellite loci. We found 29 unique individuals in the population, comprising 17 females and 12 males of different age classes. Relatedness between females suggested independent colonisations by discrete, small groups rather than by one cohesive clan of related females. This obviates the need for a single solution for dealing with all the females in the area in order to maintain social integrity, and has implications in terms how these elephants can be dealt with. We demonstrate how social organization inferred through molecular data from non-invasive sampling can inform management decisions.     

Relatedness and demography of African forest elephants: inferences from noninvasive fecal DNA analyses

African forest elephants (Loxodonta cyclotis) are genetically and morphologically distinct from their savannah counterparts, but their biology remains poorly understood. In this study, I use noninvasive fecal DNA analyses to examine the relatedness structure and historical demography of forest elephants at 2 sites in SW Gabon, central Africa. Pairwise relatedness values calculated between 162 elephant individuals genotyped at 8 microsatellite loci were significantly higher within spatially associated dung piles than between random pairings for one site. First- and second-order relatives were most commonly detected among dung piles from adult female pairs and adult females and juveniles. Pairwise relatedness estimates suggested that, like savannah elephants, forest groups are largely composed of adult females, their sisters, and juvenile offspring. Associations between males, and groups containing juveniles from multiple related females, were detected but at much lower frequency. Analysis of mitochondrial d-loop sequences from 70 elephant individuals identified 2 haplogroups in SW Gabon.     

Distribution and Conservation Status of the Red-Shanked Douc (Pygathrix nemaeus) in Lao PDR: An Update

The endangered red‐shanked douc (Pygathrix nemaeus), endemic to Lao PDR, Vietnam, and perhaps Cambodia, remains little known. The Lao population is highly threatened. To improve conservation prospects of the species there, we here update a status review from 1999. Subsequent literature (mostly not readily available to the outside scientific community) was reviewed critically. Doucs and their habitat in Lao PDR faced continuous, increasing threats in the past 10 years through large development projects and heavy hunting. Many locations with records from the 1990s were not surveyed in the last decade, so douc persistence remains uncertain in them. Given the poor status of the species in Vietnam and Cambodia, the Lao population is surely the world's largest and the best hope for the species’ global conservation. Resources for conserving species are very limited in the country, urging prioritization of populations, so available resources have maximum effect. Nakai–Nam Theun and Hin Namno National Protected Areas hold the largest populations of P. nemaeus, but face great threats from hunting. Management of these areas (and secondary priority areas) should focus on control of this illegal activity. Am. J. Primatol. 74:874‐889, 2012. © 2012 Wiley Periodicals, Inc.     

New records and updated checklist of mosquitoes (Diptera: Culicidae) from Lao People's Democratic Republic,with special emphasis on adult and larval surveillance in Khammuane Province

A list of mosquitoes from the Nakai Nam Theun National Protected Area along the Nam Theun, Nam Mon, Nam Noy, and Nam On rivers, Nakai District, Khammuane Province, Lao People's Democratic Republic (Lao PDR) is presented. Fifty‐four mosquito taxa were identified, including 15 new records in the Lao PDR. A fragment of the mtDNA cytochrome c oxidase subunit I (COI) gene, barcode region, was generated for 34 specimens, and together with four specimens already published, it represented 23 species in eight genera. In addition, an updated checklist of 170 mosquito taxa from Lao PDR is provided based on field collections from Khammuane Province, the literature, and specimens deposited in the Smithsonian Institution, National Museum of Natural History (SI‐NMNH), Washington, DC, U.S.A. This paper provides additional information about the biodiversity of mosquito fauna in Lao PDR.     

The Knysna elephants: a population study conducted using faecal DNA

The elephants of the Knysna region continue to survive, despite fears that there was only a single surviving female. Their range is larger than previously believed, and includes the Afromontane forest and mountain fynbos. The five individuals detected in this study were all females, and share a single mitochondrial DNA control region haplotype with individuals from Addo Elephant National Park. At least two of these elephants appear to be first‐order relatives, and the others may be part of a single matrilineal group. The genetic diversity detected is lower than that found in most African savanna populations, but is higher than that found at Addo, where individuals represent the descendents of a severe population size bottleneck. Levels of genetic diversity are more similar to those detected at Kruger National Park, suggesting that the Knysna elephants represent a remnant of the once widespread populations of South Africa.     

The Influence of Social Structure,Habitat, and Host Traits on the Transmission of Escherichia coli in Wild Elephants

Social structure is proposed to influence the transmission of both directly and environmentally transmitted infectious agents. However in natural populations, many other factors also influence transmission, including variation in individual susceptibility and aspects of the environment that promote or inhibit exposure to infection. We used a population genetic approach to investigate the effects of social structure, environment, and host traits on the transmission of Escherichia coli infecting two populations of wild elephants: one in Amboseli National Park and another in Samburu National Reserve, Kenya. If E. coli transmission is strongly influenced by elephant social structure, E. coli infecting elephants from the same social group should be genetically more similar than E. coli sampled from members of different social groups. However, we found no support for this prediction. Instead, E. coli was panmictic across social groups, and transmission patterns were largely dominated by habitat and host traits. For instance, habitat overlap between elephant social groups predicted E. coli genetic similarity, but only in the relatively drier habitat of Samburu, and not in Amboseli, where the habitat contains large, permanent swamps. In terms of host traits, adult males were infected with more diverse haplotypes, and males were slightly more likely to harbor strains with higher pathogenic potential, as compared to adult females. In addition, elephants from similar birth cohorts were infected with genetically more similar E. coli than elephants more disparate in age. This age-structured transmission may be driven by temporal shifts in genetic structure of E. coli in the environment and the effects of age on bacterial colonization. Together, our results support the idea that, in elephants, social structure often will not exhibit strong effects on the transmission of generalist, fecal-oral transmitted bacteria. We discuss our results in the context of social, environmental, and host-related factors that influence transmission patterns.     

The evolution and phylogeography of the African elephant inferred from mitochondrial DNA sequence and nuclear microsatellite markers

Recent genetic results support the recognition of two African elephant species: Loxodonta africana, the savannah elephant, and Loxodonta cyclotis, the forest elephant. The study, however, did not include the populations of West Africa, where the taxonomic affinities of elephants have been much debated. We examined mitochondrial cytochrome b control region sequences and four microsatellite loci to investigate the genetic differences between the forest and savannah elephants of West and Central Africa. We then combined our data with published control region sequences from across Africa to examine patterns at the continental level. Our analysis reveals several deeply divergent lineages that do not correspond with the currently recognized taxonomy: (i) the forest elephants of Central Africa; the forest and savannah elephants of West Africa; and (iii) the savannah elephants of eastern, southern and Central Africa. We propose that the complex phylogeographic patterns we detect in African elephants result from repeated continental-scale climatic changes over their five-to-six million year evolutionary history. Until there is consensus on the taxonomy, we suggest that the genetic and ecological distinctness of these lineages should be an important factor in conservation management planning.     

Evolutionary and demographic processes shaping geographic patterns of genetic diversity in a keystone species,the African forest elephant (Loxodonta cyclotis)

The past processes that have shaped geographic patterns of genetic diversity may be difficult to infer from current patterns. However, in species with sex differences in dispersal, differing phylogeographic patterns between mitochondrial (mt) and nuclear (nu) DNA may provide contrasting insights into past events. Forest elephants (Loxodonta cyclotis) were impacted by climate and habitat change during the Pleistocene, which likely shaped phylogeographic patterns in mitochondrial (mt) DNA that have persisted due to limited female dispersal. By contrast, the nuclear (nu) DNA phylogeography of forest elephants in Central Africa has not been determined. We therefore examined the population structure of Central African forest elephants by genotyping 94 individuals from six localities at 21 microsatellite loci. Between forest elephants in western and eastern Congolian forests, there was only modest genetic differentiation, a pattern highly discordant with that of mtDNA. Nuclear genetic patterns are consistent with isolation by distance. Alternatively, male‐mediated gene flow may have reduced the previous regional differentiation in Central Africa suggested by mtDNA patterns, which likely reflect forest fragmentation during the Pleistocene. In species like elephants, male‐mediated gene flow erases the nuclear genetic signatures of past climate and habitat changes, but these continue to persist as patterns in mtDNA because females do not disperse. Conservation implications of these results are discussed.     

Characterization of tetranucleotide microsatellite loci in the African Savannah Elephant (Loxodonta africana africana)

Most African elephant (Loxodonta africana africana) populations are isolated and thus threatened by a loss of genetic diversity. As a consequence, genetic analysis of African elephant populations will play an increasing role in their conservation, and microsatellite loci will be an important tool in these analyses. Previously published sets of polymorphic microsatellites developed for African elephants are all dinucleotide repeats, which are prone to typing error. Here, we characterize 11 tetranucleotide microsatellite loci in the African elephant. All loci were polymorphic in 32 faecal samples and two tissue samples from 33 individual African savannah elephants.     

Elephant behaviour and conservation: social relationships, the effects of poaching, and genetic tools for management

Genetic tools are increasingly valuable for understanding the behaviour, evolution, and conservation of social species. In African elephants, for instance, genetic data provide basic information on the population genetic causes and consequences of social behaviour, and how human activities alter elephants' social and genetic structures. As such, African elephants provide a useful case study to understand the relationships between social behaviour and population genetic structure in a conservation framework. Here, we review three areas where genetic methods have made important contributions to elephant behavioural ecology and conservation: (1) understanding kin-based relationships in females and the effects of poaching on the adaptive value of elephant relationships, (2) understanding patterns of paternity in elephants and how poaching can alter these patterns, and (3) conservation genetic tools to census elusive populations, track ivory, and understand the behavioural ecology of crop-raiding. By comparing studies from populations that have experienced a range of poaching intensities, we find that human activities have a large effect on elephant behaviour and genetic structure. Poaching disrupts kin-based association patterns, decreases the quality of elephant social relationships, and increases male reproductive skew, with important consequences for population health and the maintenance of genetic diversity. In addition, we find that genetic tools to census populations or gather forensic information are almost always more accurate than non-genetic alternatives. These results contribute to a growing understanding of poaching on animal behaviour, and how genetic tools can be used to understand and conserve social species.     

Quantity and Configuration of Available Elephant Habitat and Related Conservation Concerns in the Lower Kinabatangan Floodplain of Sabah,Malaysia

The approximately 300 (298, 95% CI: 152–581) elephants in the Lower Kinabatangan Managed Elephant Range in Sabah, Malaysian Borneo are a priority sub-population for Borneo''s total elephant population (2,040, 95% CI: 1,184–3,652). Habitat loss and human-elephant conflict are recognized as the major threats to Bornean elephant survival. In the Kinabatangan region, human settlements and agricultural development for oil palm drive an intense fragmentation process. Electric fences guard against elephant crop raiding but also remove access to suitable habitat patches. We conducted expert opinion-based least-cost analyses, to model the quantity and configuration of available suitable elephant habitat in the Lower Kinabatangan, and called this the Elephant Habitat Linkage. At 184 km², our estimate of available habitat is 54% smaller than the estimate used in the State''s Elephant Action Plan for the Lower Kinabatangan Managed Elephant Range (400 km²). During high flood levels, available habitat is reduced to only 61 km². As a consequence, short-term elephant densities are likely to surge during floods to 4.83 km⁻² (95% CI: 2.46–9.41), among the highest estimated for forest-dwelling elephants in Asia or Africa. During severe floods, the configuration of remaining elephant habitat and the surge in elephant density may put two villages at elevated risk of human-elephant conflict. Lower Kinabatangan elephants are vulnerable to the natural disturbance regime of the river due to their limited dispersal options. Twenty bottlenecks less than one km wide throughout the Elephant Habitat Linkage, have the potential to further reduce access to suitable habitat. Rebuilding landscape connectivity to isolated habitat patches and to the North Kinabatangan Managed Elephant Range (less than 35 km inland) are conservation priorities that would increase the quantity of available habitat, and may work as a mechanism to allow population release, lower elephant density, reduce human-elephant conflict, and enable genetic mixing.     

Asian Elephants in China: Estimating Population Size and Evaluating Habitat Suitability

We monitored the last remaining Asian elephant populations in China over the past decade. Using DNA tools and repeat genotyping, we estimated the population sizes from 654 dung samples collected from various areas. Combined with morphological individual identifications from over 6,300 elephant photographs taken in the wild, we estimated that the total Asian elephant population size in China is between 221 and 245. Population genetic structure and diversity were examined using a 556-bp fragment of mitochondrial DNA, and 24 unique haplotypes were detected from DNA analysis of 178 individuals. A phylogenetic analysis revealed two highly divergent clades of Asian elephants, α and β, present in Chinese populations. Four populations (Mengla, Shangyong, Mengyang, and Pu’Er) carried mtDNA from the α clade, and only one population (Nangunhe) carried mtDNA belonging to the β clade. Moreover, high genetic divergence was observed between the Nangunhe population and the other four populations; however, genetic diversity among the five populations was low, possibly due to limited gene flow because of habitat fragmentation. The expansion of rubber plantations, crop cultivation, and villages along rivers and roads had caused extensive degradation of natural forest in these areas. This had resulted in the loss and fragmentation of elephant habitats and had formed artificial barriers that inhibited elephant migration. Using Geographic Information System, Global Positioning System, and Remote Sensing technology, we found that the area occupied by rubber plantations, tea farms, and urban settlements had dramatically increased over the past 40 years, resulting in the loss and fragmentation of elephant habitats and forming artificial barriers that inhibit elephant migration. The restoration of ecological corridors to facilitate gene exchange among isolated elephant populations and the establishment of cross-boundary protected areas between China and Laos to secure their natural habitats are critical for the survival of Asian elephants in this region.     

象科动物对当地森林生态系统的影响

现存的象科动物(Elephantidae)分为非洲草原象(Loxodonta africana)、非洲森林象(Loxodonta cyclotis)和亚洲象(Elephas maximus)3 种,作为森林生态系统的关键物种,它们对当地森林生态系统的影响非常复杂,在一定环境条件下,既可能是积极的作用,也可能是消极的作用。积极的作用包括:帮助植物传播种子;促进种子萌发;创造断层,维持群落多样性;为其他动物增加食物资源;为其他动物创造栖息地。消极的作用包括:使一些物种的种群数量减小;使森林变成灌木丛和草原等。而由于活动受限导致的种群密度过高是象科动物对森林生态系统产生消极作用的主要原因。当前象科动物的3 个物种均面临种群数量锐减和生存空间不断缩小的危机,为此迫切需要针对其对生物多样性和生态平衡的影响开展深入和全面的研究,并且应根据实际情况因地制宜地制定管理措施。     

Sex and size related differences in the dry season feeding patterns of elephants in Chobe National Park, Botswana

Differences in feeding patterns of the African elephant were examined by sex and age during the dry season in a dystrophic savanna-woodland ecosystem in northern Botswana. Adult males had the least diverse diet in terms of woody plant species, but they consumed more plant parts than family units. The diameter of stems of food plants broken or bitten off was also greater for adult males than for females and subadult males. Adult males spent more time foraging on each woody plant than did females. The number of woody plant species and individuals present were higher at feeding sites of family units than at feeding sites of adult males, indicating that family units positioned themselves at feeding sites with higher species diversity than those of males. We argue that the most likely explanation for these differences is related to the pronounced sexual size dimorphism exhibited by elephants, resulting in sex differences in browsing patterns due to the allometric relationships that govern the tolerance of herbivores for variation in diet quality. From our results this Body Size Hypothesis is accepted rather than the alternative Scramble Competition Hypothesis, which predicts that adult male elephants consume lower quality browse because they are displaced from preferred browse as an outcome of scramble competition with adult females and their offspring. If the feeding patterns of adult male elephants were affected by intersexual scramble competition, we would expect adult males to browse at a higher level in the canopy than the smaller-bodied females and their offspring. No evidence was found for this, although adult females were found to browse at a higher level in the canopy when feeding in close proximity to subadults and juveniles than when feeding alone. Sex differences in elephant browsing patterns are, we propose, of relevance to understanding and managing elephant impacts on African woodlands.     

元江-李仙江流域亚洲象生境适宜性评价——基于荟萃分析和遥感大数据分析

生境适宜性评价是物种保护和生境管理与规划的基础。近几十年来,云南境内野生亚洲象数量剧增,外扩迁移事件频发,而新迁入区域生境适宜状况因物种出现点数据缺乏而难以评价,掣肘迁移亚洲象保护与风险防范应急。以亚洲象新近迁入的元江-李仙江流域为案例区,采用荟萃分析统计亚洲象生境评价因子,结合相关性分析和方差膨胀因子独立性检验,筛选出生境评价因子;基于开源遥感数据产品量化生境因子,综合主成分分析和层次分析计算生境评价因子权重,采用生境适宜性指数(Habitat Suitability Index, HSI)模型评价元江-李仙江流域亚洲象生境适宜性,并分析其景观格局。结果表明：(1)元江-李仙江流域亚洲象生境适宜性空间格局主要表现为由下游至上游呈递减趋势,最适生境主要分布于流域下游段,而流域上游段适宜生境少;(2)元江流域生境适宜性低于李仙江流域,且其生境斑块连接度更低、破碎化更严重;(3)2021年“北移象群”北迁沿程生境适宜性由西南向东北呈下降趋势。基于亚洲象生境适宜性评价结果,科学引导野生亚洲象迁入适宜生境区,以规避人象冲突,保障外迁亚洲象群及其活动区居民生命财产安全,服务于区域生物多样性保护与...     

The distribution of Mekong schistosomiasis, past and future: preliminary indications from an analysis of genetic variation in the intermediate host

Neotricula aperta is the only known intermediate host of Schistosoma mekongi which infects humans in Cambodia and the southern tip of Lao PDR. DNA-sequence data (partial rrnL, i.e., mitochondrial 16S large ribosomal-RNA gene) were obtained for 359 N. aperta snails sampled at 31 localities in Cambodia, Lao PDR and Thailand. A nested clade analysis was performed to detect and evaluate any geographical patterns in the observed variation and to identify genetic subpopulations or clades. Coalescent simulations were used to compare different historical biogeographical hypotheses for N. aperta and S. mekongi. A coalescent based method was also used to provide maximum likelihood estimates (MLEs) for effective populations sizes and historical growth and migration rates. Dates were also estimated for phylogenetic events on the gene tree reconstructed for the sampled haplotypes (e.g. the time to most recent common ancestor). N. aperta was found to be divided into two monophyletic clades, a spring-dwelling form of northern Lao PDR and a more widespread larger-river dwelling form of southern Lao PDR and Cambodia; this divergence was dated at 9.3 Ma. The populations with the largest estimated population sizes were found in the Mekong River of Lao PDR and Cambodia; these, together with those of the rivers of eastern Cambodia, appeared to have been the fastest growing populations. Dominant levels of gene-flow (migration) were apparent in a South to North direction, particularly out of seeder populations in the Cambodian Mekong River. The radiation of N. aperta into sub-clades across Cambodia and Lao PDR is dated at around 5 Ma. The findings suggest that historical events, rather than ecology, might best explain the absence of S. mekongi from most of Lao PDR. The public health implications of these findings are discussed, as are pointers for future studies and surveillance.