A moorable,automated plankton sampler

A moorable, automated plankton sampler is described, designed to obtain series of plankton samples over extended time periods in the absence of a surface vessel. The sampler consists of one or more net-containing boxes, a unit for generating as well as measuring water flow through the net boxes, a programmeable control unit, and a frame. Each net box contains several nets on a vinyl strip, used to move the nets from the storage chamber into the fishing position and then into the preservative chamber. Preservation of samples is in a formalin-brine mixture.Net boxes can be added and the number of nets per box changed; the prototype is described with 1 net box with 10 nets. Volume of water to be filtered, time between sample collections, number of net boxes and the number of nets in each box is programmed into the control unit before sampler deployment. Collections made with the sampler are compared with those made with a SCOR net and a pump.     

Phage-mediated bioluminescent detection of Bacillus anthracis

Aims:  Bacillus anthracis , the causative agent of anthrax, is a serious human pathogen. The aim of this study was to provide the proof of principle results for the development of a 'bioluminescent' reporter bacteriophage that was capable of specifically detecting B. anthracis .
Methods and Results:  The reporter phage was engineered by integrating the bacterial luxA and luxB reporter genes into a nonessential region of the lysogenic Wβ phage genome. This resulted in a phage that was capable of specifically infecting and conferring a bioluminescent phenotype to B. anthracis viable cells. No processing or cell preparation was required; the phage and cells were simply mixed, and the samples were analysed for bioluminescence. A bioluminescent signal was evident after 16 min postinfection of vegetative cells. The strength and time required to generate the signal was dependent on the number of cells present. Nevertheless, 10³ CFU ml⁻¹ was detectable within 60 min. The utility of the bioluminescent phage was analysed using spores as the starting material. The Wβ:: luxAB phage was able to transduce a bioluminescent signal to germinating spores within 60 min.
Conclusions:  This proof of principle study demonstrates that the reporter phage displays promise as a tool for the rapid detection of B. anthracis .
Significance and Impact of the Study:  The new methodology offers the potential for the detection of viable cells from either environmental or clinical samples.     

A computerized plankton counter

A portable computerized plankton counting system is presented, which has the potential to enumerate 255 different species per sample. The software is used to count phytoplankton samples and produce summary data. The hardware allows the results to be reproduced in the form of a hardcopy, stored on a cassette tape, or transferred to a larger computer for analysis.     

The effect of fluidic conditions on the continuous-flow bioluminescent detection of ATP in a microfluidic device

The effect of fluidic conditions on the bioluminescent detection of ATP in a microfluidic device was surveyed using homemade detector system. The bioluminescent reaction of ATP was directly affected by the retention time and flow rates of the solutions in this diffusion-based mixing and reaction system due to the laminar flow in the microchannel. ATP and enzyme solutions were separately injected into the microfluidic device at different flow rates through 3 inlet ports. The ATP solution was injected through the middle port, while the enzyme solution was injected in the two remaining ports. When the ratio of ATP to enzyme solution was fixed, the optimum flow rates of enzyme, ATP, and enzyme solution was 3.5, 8.0, and 3.5 μL/min, respectively. The optimal total flow rate was 15 μL/min. The detection limit for the concentration of ATP at optimal conditions was less than 10⁻⁷ M.     

Characteristics of plankton communities in Chinese integrated fish ponds: effects of excessive grazing by planktivorous carps on plankton communities

Biomass and production of plankton communities were investigated in two Chinese integrated fish culture ponds in August, Dianshanhu Pond (with high density of planktivorous carp) and Pingwang Pond (with low density of planktivorous carp). The plankton communities were composed of rotifers, protozoans, phytoplankton (<40 µm) and bacteria. The large phytoplankton (>40 µm), cladocerans and copepods were rare because of grazing pressure by the carp. The density or biomass of bacteria (1.93 × 10⁷ and 2.20 × 10⁷ cells ml^–1 on average in Dianshanhu and Pingwang Ponds, respectively), picophytoplankton (24.6 and 18.5 mg m^–3 Chla on average) and rotifers (5372 and 20733 ind. 1^–1 on average) exceeded the maximum values reported for natural waters.The average [³H]thymidine uptake rates were 694 and 904 pmoles 1^–1 h^–1 (13.4 and 20.6 µgC 1^–1) and the bacterial production by the >2 µm fraction amounted 21–28% of total [³H] thymidine uptake rate in both ponds. The mean chlorophylla concentrations were 59.1 and 183 mg m^–3 in Dianshanhu and Pingwang Ponds, respectively. 82.4% and 65.3% of the total Chla was contributed by the <10 µm nano- and picophytoplankton in each pond, respectively. In particular, the picophytoplankton contribution amounted 41.2% of thtal Chla in Dianshanhu Pond. Primary production was 2.5 and 3.4 gC m^–2 d^–1 in each pond, respectively, and >50% of production was contributed by picophytoplankton. The mean biomasses of protozoa were 168 µg 1^–1 and 445 µg 1^–1 and those of rotifers were 763 µg 1^–1 and 1186 µg 1^–1 in Dianshanhu and Pingwang Ponds, respectively. The ecological efficiencies expressed in terms of the ratios of primary production to zooplankton production were 0.22 and 0.31, for the two ponds.     

A review of bioluminescent ATP techniques in rapid microbiology

Use of firefly luciferase to assay adenosine triphosphate (ATP) extracted from microorganisms provides an easy means to enumerate microbes within minutes. The small amount of light produced is proportional to ATP and thus microbial number. The average bacterium contains around 10^?15 g ATP per cell. Present reagents permit detection of 10³ cells per tube. Luminometers currently on the market detect about 10^?12 g ATP. Proper extraction of ATP from the microbes is an essential part of any protocol, as is the removal of non-microbial ATP from, for example, somatic cells also present in samples. The technique may be applied to a wide range of samples, for example food and beverages and clinical samples such as urine. The ATP assay gives a global measure of microbial numbers, i.e. it is not species specific unless a species separation step is included in the protocol.     

A moorable,automated plankton sampler: comments on Lewis & Heckl (1991)

Comments on a recently described moorable, automated plankton sampler are given, mainly because it was designed to capture large zooplankton. However, the need for automatic devices for sampling phyto- and zooplankton is stressed. A new design for such a device is presented. A preliminary test was made using standard continuous-flow (auto-analyser) equipment, a cultured flagellate and formalin as a fixative.     

Heavy metal uptake by plankton and other seston particles

Abstract

The distribution of heavy metals Cd, Cu and Pb between the dissolved phase and the suspended matter has been studied in a stagnant fresh-water lake Zoommeer with the aim of finding a link between heavy metals and seston particles. Phytoplankton and Zooplankton were identified to species level and their density was determined. The average surface area and average volume, respectively, of each plankton species was calculated from the measured dimensions of 20–200 specimens of each species. Heavy metal concentrations in the dissolved phase and the particulate matter were determined by differential pulse anodic stripping voltammetry.

The seston particles were divided into 10 subdivisions and the total surface area and volume, respectively, of each subdivision was taken as an independent variable for the subsequent multiple regression analysis to find the possible correlations with the heavy metal concentrations. The obtained models can explain a very large part (up to 98% for Pb, 99% for Cd and 87% for Cu) of the variation in heavy metal concentration. An adsorption process appears to govern Cd and Pb uptake by Chlorophyceae and Dinophyceae. In addition, both Cd and Pb can penetrate into Chlorophyceae. In the case of Cu, a specific interaction with the Cyanophyceae has been found. In general, the uptake of heavy metals is highly specific for both the respective metal and the organism.     

Physical control of plankton population abundance and dynamics in intertidal rock pools

Little is known about the population structure and dynamics of plankton of intertidal rock pools. A numerical model was developed for rock pool plankton with growth limited by both tidal washout and the stress associated with adverse conditions in high-shore pools. This model predicts that a stress tolerant species will tend to have maximum population densities in high-shore pools and that populations will fluctuate in opposite phase to the spring-neap tidal cycle. Conversely, where a species is susceptible to stress in high-shore pools, the maximum population density is likely to occur lower on the shore, and numbers in upper shore pools will cycle in phase with the spring-neap cycle. These two alternative predictions were sufficient to classify the dynamics of the most abundant species in time series taken from rock pools in the Isle of Man. The dinoflagellate Oxyrrhis marina followed the predictions of the stress tolerant model. In comparison, the spatiotemporal patterns of other taxa, including a ciliate, a dinoflagellate and cryptophytes, suggested stress-susceptible life histories.     

BIOLUMBASE--the database of natural and transgenic bioluminescent organisms.

The Institute of Biophysics SB RAS hosts and maintains a specialized collection of luminous bacteria (CCIBSO 836) containing over 700 strains isolated in various regions of the world's oceans. The culture collection is a source of lux genes and biologically active substances. The wide application of bioluminescence in medicine and ecology has given importance to analysing information on the structure and functioning of bioluminescence systems in natural and transgenic microorganisms, as well as on their features that are closely interrelated with bioluminescence. The aims of our BIOLUMBASE database are: gathering information on microorganisms with lux genes, their analysis and free access, and distribution of this data throughout the global network. The database includes two sections, natural and transgenic luminous microorganisms, and is updated by our own experimental results, the published literature and internet resources. For the future, a publicly available internet site for BIOLUMBASE is planned. This will list the strains and provide comprehensive information on the properties and functions of luminous bacteria, the mechanisms of regulation of bioluminescence systems, constructs with lux genes, and applications of bioluminescence in microbiology, ecology, medicine and biotechnology. It is noteworthy that this database will also be useful for evaluation of biological hazards of transgenic strains. Users will be able to carry out bibliographic and strain searches starting from any feature of interest.     

Observations on the plankton of some Costa Rican lakes

We sampled 30 lakes in Costa Rica in the wet season (July–August) of 1991 for phytoplankton (with integrated and whole water samples), and 17 for zooplankton (with net tows). Taxa of plankton and community richness were poorly related to geography, morphology, chemistry, and other biota. Neither the zooplankton nor the phytoplankton appeared to influence the composition of the other, and neither were apparently influenced by the presence of fish.Phytoplankton richness reflected primarily sampling method, but also tended to decrease with elevation and with Secchi disk depth, and tended to increase with pH and alkalinity. Chlorophytes were the most abundant division in 14 lakes; these lakes tended to be unstratified, turbid, and located at higher elevation. Diatoms were common in 4 of the 7 lakes with elevated silica (over 30 ppm). Each lake showed at least a 3 : 1 dominance by copepods, cladocera, or insect larvae. Copepods dominated 7 of the 17 lakes, most of which were shallow, turbid, and had low alkalinity. Cladocera dominated 7 lakes that were typically deeper and located at low-to mid-elevations. Insect larvae dominated two small, turbid lakes.     

A luxCDABE-based bioluminescent bioreporter for the detection of phenol

A bioluminescent reporter strain, Acinetobacter sp. DF4-8, was constructed for the detection of phenol by inserting a mopR-like promoter upstream of the Vibrio fischeri bioluminescent luxCDABE gene cassette in a modified mini-Tn5 construct. When introduced into the chromosome of Acinetobacter sp. DF4, the bioreporter produced a sensitive bioluminescent response to phenol at concentrations ranging from 2.5 to 100 ppm. This response was linear (R ²=0.986) in the range from 20 to 90 ppm. A significant bioluminescent response was also recorded when strain DF4-8 was incubated with slurries from aged, phenol-contaminated soil. Received 13 February 2002/ Accepted in revised form 11 July 2002     

Total bile acids in hyperlipidaemic serum determined by bioluminescent and spectrophotometric methods

A simple, rapid and sensitive bioluminescent method has been used to measure total bile acids in hyperlipidaemic serum. We found that the levels of total bile acids in hypertriglyceridaemic and hypercholesterolemic sera determined by a spectrophotometric method were four-fold higher than those measured by the bioluminescent method (6.73 ± 4.07 μmol/l (mean ± SD) by bioluminescent and 26.10 ± 13.42 μmol/l by the spectrophotometric method). There was no difference in total bile acid levels between these two methods for normal serum (4.72 ± 3.38 μmol/l by bioluminescence and 4.49 ± 3.27 μmol/l by the spectrophotometric method).     

Methodological problems of direct bioluminescent ATP assay in platelets and erythrocytes

Direct bioluminescent ATP determination in platelets and erythrocytes involves the study of different parameters which are discussed here. Some parameters are linked to the bioluminescent reaction and to the analyte (ATP); others have regard to the biological matrix. The composition of bioluminescent reagents and the preparation and conservation of the ATP standard, also in the presence of excipients, are among the first given. Matrix problems involve cell characteristics related to age and form, lysis resistance and the possible formation of aggregates (platelets) that may inhibit the complete release of ATP. For these reasons we used the most efficient ATP release agent with the lowest inhibitory effect on luciferase. The data obtained correlate well with a bioluminescent method requiring extraction with ethanol/EDTA, and therefore more time, for ATP determination in platelets and erythrocytes.     

Community structure and function in prokaryotic marine plankton

Molecular biodiversity studies of microbial communities have provided invaluable information on the existence of heretofore unknown organisms and on community composition. Cloning and ‘fingerprinting’ techniques have been used many times to study prokaryote community composition of marine plankton. There are still many opportunities for new discoveries in this area, but the results have also opened new questions about the activities of these organisms and their function, going beyond just listing taxa or counting organisms. Rarely can the broad function be inferred from phylogenetic position alone (e.g. cyanobacteria). The recent discovery of abundant non-cyanobacterial marine phototrophs points to our inability to link phylogenetic position with function in a detailed way. One approach we have found fruitful is to combine fluorescence in situ hybridization with microautoradiography, a technique dubbed STARFISH. A recent application has shown that ubiquitous archaea from the deep sea, phylogenetically related to extreme thermophiles, are active in the uptake of amino acids from ambient (nanomolar) concentrations. This suggests the group is at least partly heterotrophic and able to compete successfully with bacteria for nutrients. Other as-yet uncultivated groups are also amenable to similar studies. This revised version was published online in August 2006 with corrections to the Cover Date.     

Movement of plankton through lake-stream systems

1. River plankton are often assumed to come from upstream lakes, but the factors controlling the movement of plankton between lakes and rivers into outflow streams are unclear. We tested the possibility that the physical structure of the littoral zone near the lake outlet (depth, presence of macrophytes) and diurnal differences in plankton composition at the lake surface influence the movement of plankton from the lake into the stream and determine their persistence downstream. 2. Zooplankton and phytoplankton biomass, community composition and mean body size were compared between two deep lakes without macrophytes at the lake edge and two shallow lakes with macrophytes at the lake edge. Samples were collected day and night on three dates, in the lake centre, in the littoral zone adjacent to the lake outlet, at the outlet and at two sites downstream in Algonquin Park, Ontario, Canada. 3. The morphology of lake edges clearly affects the movement of lake zooplankton into outlet streams. Outlets draining deeper littoral zones had higher zooplankton biomass than shallow littoral outlets (P < 0.0001), but these differences disappeared within 50 m downstream of the lake. There was no difference in mean zooplankton body size among lake outlets or between littoral and outlet samples. However, shallow littoral zones were dominated by cyclopoid copepods and deeper littoral zones were dominated by Bosmina longirostris. In contrast, phytoplankton biomass entering the outlet was similar to that found within the lake and did not vary with lake outlet morphology. These effects were consistent across several sampling weeks and were not affected by surface zooplankton biomass changes associated with diurnal vertical migration in the lake centre. 4. A comparison with published river zooplankton data suggests that zooplankton are rapidly eliminated from shallow outlet streams (≤1 m deep) but persist in most deeper outlet rivers (≥2 m deep). Because the depth of an outlet river determines downstream zooplankton community development, the contribution of lakes to river plankton communities may be influenced by the location of each lake within the drainage basin. These findings suggest that lake and outflow physical structure influences connection strength between spatially successive habitats.     

A bioluminescent assay for the determination of phosphoenolpyruvate carboxykinase activity in nanogram-sized tissue samples

A highly specific and sensitive assay for the determination of phosphoenolpyruvate carboxykinase (PEPCK) in nanogram-sized tissue samples is described. This test system is based on the stoichiometric transformation of phosphoenolpyruvate into ATP. In a subsequent step ATP is quantified by bioluminescent techniques. The applicability of this assay system is shown by measurements in liver samples with normal and high PEPCK activity levels.     

Palaeozoic calcareous plankton: evidence from the Silurian of Gotland

In order to investigate whether or not equivalents to modern calcareous plankton existed in Palaeozoic times, extremely well-preserved successions have to be investigated. The Silurian strata on Gotland (Sweden) are exceptionally well preserved because they have not experienced deep burial conditions and tectonic stress, due to their position on the stable Baltic Shield. Scanning electron microscope investigations of polished, slightly etched rock surfaces revealed the presence of a variety of calcareous micro- and nannofossils. Among these organisms, many can be termed 'calcispheres' (60–100 µm in diameter), whereas others due to their size range (nannofossils) are informally termed herein as 'nannospheres' (10–25 µm in diameter). The systematic attribution of these fossils is unknown ( incertae sedis ). Mesozoic calcispheres are usually attributed to calcareous cysts of dinoflagellates following comparisons of ultrastructure with modern species. The abundance of different calcispheres in the Silurian sediments of Gotland and the observation that many of the calcareous microfossils occur in distinctly different facies as well as their spherical shape indicate that they probably belong to calcareous micro- and nannoplankton. We therefore conclude that calcareous plankton most probably existed already during the Palaeozoic, but can only be observed under conditions of exceptional preservation.     

Use of bioluminescent Salmonella for assessing the efficiency of constructed phage-based biosorbent

A bacteriophage-based biosorbent for Salmonella enteritidis was constructed, and bacterial bioluminescence was used for assessment of the efficiency of cell capture. A strain of S. enteritidis with bioluminescent phenotype was constructed by transformation with plasmid pT7 carrying the entire lux operon from Photorhabdus luminescens. The relation between relative light output (RLU) and colony-forming units (CFU/ml) of the bioluminescent strain was established. The bacteriophage specific to S. enteritidis was biotinylated, and the biotinylation procedure was optimized based on the maximum retention of phage infectivity. The biotinylated phages were then coated onto streptavidin-labeled magnetic beads, and were used to capture the bioluminescent S. enteritidis cells. Our preliminary results showed that the number of cells captured by constructed biosorbent was five times higher than that of the control, magnetic beads coated with nonbiotinylated phage, indicating the capture is specific. Journal of Industrial Microbiology & Biotechnology (2000) 25, 273–275. Received 06 June 2000/ Accepted in revised form 30 August 2000