Genetic variability of anchovy in the Azov-Black Sea basin

The intraspecific structure of the European anchovy (Engraulis encrasicolus) was studied on the basis of mitochondrial cytochrome b gene (cytb) fragment variability in 84 individuals from seven localities of the Black Sea and the Sea of Azov. The data on haplotype and nucleotide diversity and the values of neutrality tests suggested expansive growth of anchovy populations in the Azov-Black Sea basin. All samples from anchovy populations demonstrated a high level of haplotype diversity (Hd = 0.962). Two dominant haplotypes were identified, the frequencies of which were not directional, and they were present in all localities. Sequence analysis of the mitochondrial cytb gene fragment showed no differentiation between the Sea of Azov and the Black Sea subspecies.     

Intraspecific genetic polymorphism of Russian sturgeon <Emphasis Type="Italic">Acipenser gueldenstaedtii</Emphasis>

Three populations (Azov, Caspian, and Black Sea) of Russian sturgeon Acipenser queldenstaedtii were tested for polymorphism at nuclear (RAPD and microsatellites) and mitochondrial (PCR identification of two mitotypes) markers. In addition, morphometric analysis of he representatives of Azov population was carried out. According to the morphological characters, the Black Sea population occupied an intermediate position between the Caspian and Azov populations, reflecting the phylogeography of this species. In agreement with the morphometric data, genetic distances (the data of STR analysis) also placed the Black Sea population between the Caspian and Azov populations (F _ST = 0.058 and 0.043). The genetic distance between the Azov and Caspian population was somewhat higher (F _ST = 0.070). The highest allelic polymorphism at four microsatellite loci was found observed in Caspian population, while the lowest polymorphism was in the Sea of Azov. RAPD analysis distinguished high polymorphism within the populations, although it was not feasible for interpopulation analysis. Using the method differentiating the “baerii-like” and typical “gueldenstaedtii” mitotypes, the absence of the “baerii-like” marker in the Black Sea population was demonstrated. The frequency of this marker in Caspian and Azov populations constituted 31.1 and 1.8%, respectively. Possible evolutionary reasons for the interpopulation differences observed are discussed.     

Migration and isolation during the turbulent Ponto‐Caspian Pleistocene create high diversity in the crustacean Paramysis lacustris

The Ponto‐Caspian brackish‐water fauna inhabits estuaries and rivers of the Black, Azov and Caspian seas and is fragmented by higher salinity waters and a major interbasin watershed. The fauna is known for the high levels of endemism, complex zoogeographic histories, and as a recent source of successful invasive species. It remains debated whether the Black and Azov Sea brackish‐water populations survived unfavourable Pleistocene conditions in multiple separate refugia or whether the two seas were (repeatedly) recolonized from the Caspian. Using microsatellite and mtDNA markers, we demonstrate deep among‐ and within‐basin subdivisions in a widespread Ponto‐Caspian mysid crustacean Paramysis lacustris. Five genetic clusters were identified, but their relationships did not reflect the geography of the region. The Azov cluster was the most distinct (4–5% COI divergence), despite its geographic position in the corridor between Black and Caspian seas, and may represent a new species. In the northern Black Sea area, the Dnieper cluster was closer to the Caspian cluster than to the neighbouring Danube–Dniester–Bug populations, suggesting separate colonizations of the Black Sea. Overall, the data implied a predominant gene flow from the east to the Black Sea and highlight the importance of Caspian Sea transgressions in facilitating dispersal. Yet, the presence of distinct lineages in the Black Sea points to the persistence of isolated refugial populations that have gained diagnostic differences under presumably high mutation rates and large population sizes. The unfavourable Pleistocene periods in the Black Sea therefore appear to have promoted diversification of the brackish‐water lineages, rather than extirpated them.     

Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus)

This study extends the geographic coverage of a previous study of mitochondrial DNA restriction fragment length polymorphism in European anchovy. Both studies together include 24 samples representing 17 localities extending from the Black Sea, through the Mediterranean Sea to the eastern Atlantic as far south as Dakar, Senegal. Eighty-eight haplotypes define two clades (A and B) separated by 3.2% sequence divergence. Clade A has a star-like genealogy indicative of a recent population expansion. Clade B has a more complex genealogy, consisting of several haplotypes at intermediate frequencies. The distributions of these clades consist of a mosaic with abrupt changes between some areas and gradients between other areas. Clade A predominates the Black and Aegean seas, but is present throughout the Mediterranean. Unexpectedly, new data show that clade A is also at a high frequency in the Atlantic, from Portugal to at least Senegal. Overall, the level of genetic differentiation among populations is high (F(ST)=0.148, p<0.0001), with the greatest differences between basins. AMOVA reveals four main geographical groups: Atlantic, central Mediterranean, Aegean Sea, and Black Sea. Mismatch distribution clearly indicates historical bottleneck and population expansion for clade A, while for clade B such evidence is equivocal. This difference may reflect a range expansion for both clades, but with higher gene flow (Nm values) between demes for clade A. Both contemporary and historical processes are important in shaping the complex genetic population structure of European anchovy.     

Characterization of microsatellite loci in the dwarf eelgrass Zostera noltii (Zosteraceae) and cross‐reactivity with Z. japonica

Zostera noltii is an important species of eelgrass occurring along European, north African, Mediterranean, Black Sea and Azov Sea coasts. Nine microsatellite loci were developed and no linkage disequilibrium was observed. Cross‐amplification was observed for all loci (polymorphic) in Z. japonica; only four loci amplified (monomorphic) in Z. marina.     

Genetic structuring of European anchovy (Engraulis encrasicolus) populations through mitochondrial DNA sequences

Mitochondrial DNA sequence variation in 655?bpfragments of the cytochrome oxidase c subunit I gene, known as the DNA barcode, of European anchovy (Engraulis encrasicolus) was evaluated by analyzing 1529 individuals representing 16 populations from the Black Sea, through the Marmara Sea and the Aegean Sea to the Mediterranean Sea. A total of 19 (2.9%) variable sites were found among individuals, and these defined 10 genetically diverged populations with an overall mean distance of 1.2%. The highest nucleotide divergence was found between samples of eastern Mediterranean and northern Aegean (2.2%). Evolutionary history analysis among 16 populations clustered the Mediterranean Sea clades in one main branch and the other clades in another branch. Diverging pattern of the European anchovy populations correlated with geographic dispersion supports the genetic structuring through the Black Sea-Marmara Sea-Aegean Sea-Mediterranean Sea quad.     

Molecular analysis of phylogeographic subspecies in three Ponto-Caspian sturgeon species

Sturgeons (Order Acipenseriformes) represent an extremely valuable natural resource that is now facing depletion. In the current study we evaluate if the traditional classification in subspecies of Acipenser gueldenstaedtii, Acipenser stellatus and Huso huso, endemic to Ponto-Caspian region is sustained by molecular analysis and if these represent Evolutionary Significant Units (ESUs) that should be managed separately in conservation programs. To examine the classification of taxonomic entities we sequenced a fragment of the mitochondrial control region in case of three sturgeon species that inhabit the North-western of Black Sea and migrate for reproduction in the Lower Danube. Beside these sequences, we used previously published sequences from sturgeon individuals sampled in the Black Sea, Azov Sea and Caspian Sea. We determined the genetic diversity and genetic differentiation, conducted a Population Aggregation Analysis (PAA) and inferred an intraspecific molecular phylogeny and haplotype network. The results indicated a low level of genetic differentiation between the geographically designated subspecies and did not support a significant divergence or reciprocal monophyly between them. Our results confirm previous genetic studies with smaller samples sizes, but additional analyses including nuclear markers should be conducted for proper recommendations aiming at the development of conservation programs.     

Variation of the External Characters and Taxonomic relationships of Azov and Black-Sea populations of Percarina demidoffii (Percidae)

A variation analysis of the external characteristics used previously for the differentiation of the Azov P. maeotica and Black Sea P. demidoffii as independent tax a of the species or subspecies rank is made on museum materials. All previously used characteristics are demonstrated to be devoid of a diagnostic value. At present, there is no reason to divide the Azov-Black Sea populations of P. demidoffii into independent taxonomic units.     

Non-indigenous fish in the northern branch of the central European invasion corridor

The assessment of risks associated with non-indigenous species implies a detailed knowledge of their taxonomical composition and distribution within a certain region. The northern branch of the central European ‘invasion corridor’—a series of canals connecting different watersheds—has formed an important migratory route for Ponto-Caspian fish (i.e. fish from the Black Sea, the Sea of Azov and the Caspian Sea). However, the current status of non-indigenous fish species in this region is very scarce. This article presents a comprehensive overview of recent distribution data of non-indigenous fish species in the northern branch of the central European invasion corridor. Here, extensive data are integrated based on studies performed during 2003–2014 comprising reliable published and unpublished records from the last 12 years. Altogether, ten non-indigenous fish species were currently found in the northern branch of the central European invasion corridor, constituting 19 % of its freshwater fish diversity. Three species, including the Prussian carp (Carassius gibelio), the round goby (Neogobius melanostomus), and the Chinese sleeper (Perccottus glenii), are considered invasive species. Eight species may potentially invade this region in the near future. A comparison of the history of non-indigenous fish species introduction in the inland waters of the northern branch and other countries of the central European invasion corridor revealed similar introduction trends. Potential expansion of non-indigenous fish species across the central European invasion corridor has international implications that require awareness, cooperation, and government support from each individual country. Disclosure of recently operating vectors for non-indigenous fish introductions within the central European invasion corridor will help predict and prevent their further spread and establishment in this region.     

Interannual Variability of Lipids and Fatty Acids in Azov Anchovy Engraulis encrasicolus maeoticus (Engraulidae) under Current Salinization of the Sea of Azov

Journal of Ichthyology - The work examines the food supply of the Azov anchovy Engraulis encrasicolus maeoticus in 2006–2013, while the level of salinity of the Sea of Azov was rising from...     

New Data on the Distribution of Lamprey <Emphasis Type="Italic">Petromyzon marinus</Emphasis> and <Emphasis Type="Italic">Lethenteron camtschaticum</Emphasis> (Petromyzontidae) in Barents and White Seas

Information about the sites of catches of the sea lamprey Petromyzon marinus in the western Barents Sea and Arctic lamprey Lethenteron camtschaticum in the Barents and White seas is presented based on the data of trawl surveys performed in 2004?2016. It is demonstrated that sea lamprey is occasionally encountered in the western Barents Sea; nine specimens have been recorded during the entire period of surveys. The northernmost point of a capture of sea lamprey is located near 76° N and the easternmost point is at 31°15′ E. Arctic lamprey is not numerous in the Barents and White seas; a total of 66 and 17 specimens have been caught, respectively. Its local aggregations are found in the southeastern part of the Barents Sea and in Dvina Bay in the White Sea. Arctic lamprey penetrates to the north to 76° N and into the central part of the Barents Sea.     

Morphometric and molecular characterization of Kudoa encrasicoli n. sp. (Myxozoa: Myxosporea) from the European anchovy,Engraulis encrasicolus (L.) (Clupeiformes: Engraulidae)

Systematic Parasitology - The European anchovy represents the main fisheries for countries in the Mediterranean and Black Sea basins. The skeletal muscle of 13 of 48 (27.1%) Engraulis encrasicolus...     

Application of a bioenergetics growth model for European anchovy (<Emphasis Type="Italic">Engraulis encrasicolus</Emphasis>) linked with a lower trophic level ecosystem model

A bioenergetics model is implemented for European anchovy (Engraulis encrasicolus) and applied to the north-eastern Aegean Sea (eastern Mediterranean Sea). The model reproduces the growth of anchovy in a one-way linked configuration with a lower trophic level (LTL) ecosystem model. The LTL model provides densities for three zooplankton functional groups (heterotrophic flagellates, microzooplankton and mesozooplankton) which serve as available energy via consumption for the anchovy model. Our model follows the basic structure of NEMURO.FISH type models (North Pacific Ecosystem Model for Understanding Regional Oceanography for Including Saury and Herring). Several model parameters were specific for the Mediterranean or the Black Sea anchovy and some others were adopted from related species and NEMURO.FISH due to lack of biological information on E. encrasicolus. Simulation results showed that the fastest growth rate occurs during spring and the slowest growth rate from August to December. Zooplankton abundance during autumn was low implying that decreased prey density lead to a reduction in anchovy weight, especially for the age-3 class. Feeding parameters were adjusted to adequately fit the model growth estimates to available weight-at-age data. A detailed sensitivity analyses is conducted to evaluate the importance of the biological processes (consumption, respiration, egestion, specific dynamic action, excretion and egg production) and their parameters to fish growth. The most sensitive parameters were the intercept and exponent slope of the weight-dependent consumption and respiration process equations. Fish weight was fairly sensitive to temperature-dependent parameters.     

The North Atlantic subpolar gyre and the marine migration of Atlantic salmon Salmo salar: the ‘Merry‐Go‐Round’ hypothesis

One model for marine migration of Atlantic salmon Salmo salar proposes that North American and southern European stocks (<62° N) move directly to feeding grounds off west Greenland, then overwinter in the Labrador Sea, whereas northern European stocks (>62° N) utilize the Norwegian Sea. An alternate model proposes that both North American and European stocks migrate in the North Atlantic Subpolar Gyre (NASpG) where S. salar enter the NASpG on their respective sides of the Atlantic, and travel counterclockwise within the NASpG until returning to natal rivers. A review of data accumulated during the last 50 years suggests a gyre model is most probable. Freshwater parr metamorphose into smolts which have morphological, physiological and behavioural adaptations of epipelagic, marine fishes. Former high‐seas fisheries were seasonally sequential and moved in the direction of NASpG currents, and catches were highest along the main axis of the NASpG. Marking and discrimination studies indicate mixed continental origin feeding aggregations on both sides of the Atlantic. Marked North American smolts were captured off Norway, the Faroe Islands, east and west Greenland, and adults tagged at the Faroes were recovered in Canadian rivers. Marked European smolts were recovered off Newfoundland and Labrador, west and east Greenland, and adults tagged in the Labrador Sea were captured in European rivers. High Caesium‐137 (¹³⁷Cs) levels in S. salar returning to a Quebec river suggested 62·3% had fed at or east of Iceland, whereas levels in 1 sea‐winter (SW) Atlantic Canada returnees indicated 24·7% had fed east of the Faroes. Lower levels of ¹³⁷ Cs in returning 1SW Irish fish suggest much of their growth occurred in the western Atlantic. These data suggest marine migration of S. salar follows a gyre model and is similar to other open‐ocean migrations of epipelagic fishes.     

Intraspecific structure within three caviar-producing sturgeons (Acipenser gueldenstaedtii, A. stellatus, and Huso huso) based on mitochondrial DNA analysis

A survey of three mitochondrial DNA regions (control region, NADH5, cytochrome b) and comprehensive sequencing of the control region (631–646 bps) was conducted to examine whether subspecies and geographic populations within three species of Eurasian sturgeons, Acipenser gueldenstaedtii, A. stellatus, and Huso huso, are genetically distinct. Neither subspecies nor populations exhibited diagnostic distinction or reciprocal monophyly in any gene region examined. For the control region, molecular variance analyses (amova ) indicate that most of the variance is because of differences among haplotypes within subspecies (H. huso: 99.6%; A. stellatus: 95.0%; A. gueldenstaedtii: 81.0%) and populations (A. gueldenstaedtii: 76.1%). Significant pairwise F‐values were found for all pairwise comparisons except for Sea of Azov and Caspian Sea A. gueldenstaedtii and Caspian Sea and Black Sea A. stellatus and H. huso. Only weak genetic differentiation is apparent between select subspecies and populations, reflective of biogeographic and management history. High genetic diversity within A. gueldenstaedtii suggests the possibility of additional population structure. Future research and management projects should consider these results.     

The distribution and specific features of the biology of deepwater redfish <Emphasis Type="Italic">Sebastes mentella</Emphasis> (Scorpaenidae) during mating in the pelagial of the northern Atlantic

Data on the spatial-bathymetric distribution, size and age composition, sex ratio, and feeding of deepwater redfish Sebastes mentella in the pelagial of the northern Atlantic (Irminger and Labrador seas) during mating are provided. From 1982 to 1999, the mating of S. mentella took place in the central and southern parts of the Irminger Sea (56°–62° N, 30°–43° W); since 2000 it took place in two geographically isolated areas: in the water area of the open part of the Labrador Sea, at sites of the south of the Irminger Sea adjacent to it (54°–58° N, 38°–50° W), and above the western slopes of the Reykjanes Ridge (62°–65° N, 25°–34° W). It is assumed that during mating in the northern area mixed aggregations of two ecological groups of S. mentella—an oceanic group that distributes in the pelagial and a bottom group that inhabits the slopes of Iceland—are formed. The formation of isolated areas of mating of the species is determined by the orientation of feeding migrations that are simultaneously migrations to spawning grounds. Fish of medium sizes migrate to spawning grounds in the southwestern direction, while large fish migrate in the northern direction; the fertilization of females in these areas occurs at the end of summer. In S. mentella, the seasonal and age differences in food composition are clearly pronounced. With the onset of mating, the males’ intensity of feeding in both regions decreases by a factor of 1.5–2.0, while females continue to feed actively.     

Phylogeographic patterns of genetic diversity in the common spadefoot toad, Pelobates fuscus (Anura: Pelobatidae), reveals evolutionary history, postglacial range expansion and secondary contact

Based on allozyme variation of 410 newly collected individuals from 52 localities, we reconstructed range-wide phylogeography of the widespread Western Palearctic anuran, Pelobates fuscus. To study genetic diversity, evolutionary history, postglacial range expansion and secondary contact zones, we used a multidisciplinary approach combining information from various genetic analyses and ecological niche modeling. We confirmed the presence of two main groups in P. fuscus, initially revealed by genome size variation. Pelobates f. vespertinus presents a monomorphic group, but two main groups can be identified in P. f. fuscus: an East European and a West European group. We suggest the existence of at least four different Last Glacial refugia for P. fuscus: (1) the area between the Caspian and Azov Seas as the origin for the expansion of P. f. vespertinus; (2) the northwestern part of the Black Sea area for the East European P. f. fuscus; (3) the southwestern part of the Pannonian Plain and (4) the Po Plain for the West European P. f. fuscus. The routes of postglacial range expansions from the refugia are discussed. We newly identified a hybrid zone between P. f. fuscus and P. f. vespertinus. The width of this zone is about 12.5 km. In light of these findings, the two subspecies of P. fuscus constitute distinct evolutionary lineages and merit recognition as separate species. Our data do not provide support for the validity of P.f. insubricus. We therefore propose to synonymize this subspecies with P. f. fuscus.     

Mitochondrial DNA phylogeny and the reconstruction of the population history of a species: the case of the European anchovy (Engraulis encrasicolus)

Analysis of mitochondrial DNA restriction fragment length polymorphism in European anchovy (Engraulis encrasicolus) revealed a large number of mitotypes that form two distinct clusters (phylads). Phylad A consists of one common mitotype and many rare secondary mitotypes that are one mutational step removed from the main type. Nucleotide diversity and number of homoplasious changes are low. Phylad B has a complex pattern of mitotype connectedness, high nucleotide diversity, and a large number of homoplasious changes. It is suggested that the two phylads evolved in isolation from each other and that present coexistence is the result of a secondary contact. Moreover, phylad A has a "star" phylogeny, which suggests that it has evolved in a population that experienced a drastic bottleneck followed by an explosion of size. Phylad A is practically the only phylad present in the Black Sea, with its frequency dropping to 85% in the northern Aegean, and to 40% in the rest of Mediterranean and the Bay of Biscay. The Black Sea is, therefore, the most likely place of origin of phylad A. Molecular data are consistent with a population bottleneck in the Black Sea during the last glaciation event and a subsequent exit of phylad A with the outflow into the Aegean following the ice melting. Phylogenetic analysis of anchovy mtDNA provides a reconstruction of population history in the Mediterranean, which is consistent with the geological information.      

Variability of Black and Caspian Sea sprat <Emphasis Type="Italic">Clupeonella cultriventris</Emphasis> (Clupeidae) growth in the contemporary range

The size and age composition of the population of Black and Caspian Sea sprat Clupeonella cultriventris, as well as the variation of the growth of fish in the reservoirs of the upper reaches of the Volga, are reported and a comparative analysis of group and individual variability of fish growth within the native (Caspian, Azov, and Black seas) and contemporary (formed due to invasion) ranges is presented. The degree of variability and the asymmetry of sprat body length distribution have been shown to increase under the conditions of large population sizes, deficit of food, and slow growth. Variability was also elevated near the borders of the range of the species, notwithstanding the abundance of food. It is shown that invasion of sea walnut comb jelly Mnemiopsis leydi into the Azov and Caspian Seas had so undermined feed base of sprat, that it is not only decreased its abundance and fecundity but also slowed growth of the fish.     

Last glacial maximum biomes reconstructed from pollen and plant macrofossil data from northern Eurasia

Pollen and plant macrofossil data from northern Eurasia were used to reconstruct the vegetation of the last glacial maximum (LGM: 18,000 ± 2000 ¹⁴C yr bp ) using an objective quantitative method for interpreting pollen data in terms of the biomes they represent ( Prentice et al., 1996 ). The results confirm previous qualitative vegetation reconstructions at the LGM but provide a more comprehensive analysis of the data. Tundra dominated a large area of northern Eurasia (north of 57°N) to the west, south and east of the Scandinavian ice sheet at the LGM. Steppe‐like vegetation was reconstructed in the latitudinal band from western Ukraine, where temperate deciduous forests grow today, to western Siberia, where taiga and cold deciduous forests grow today. The reconstruction shows that steppe graded into tundra in Siberia, which is not the case today. Taiga grew on the northern coast of the Sea of Azov, about 1500 km south of its present limit in European Russia. In contrast, taiga was reconstructed only slightly south of its southern limit today in south‐western Siberia. Broadleaved trees were confined to small refuges, e.g. on the eastern coast of the Black Sea, where cool mixed forest was reconstructed from the LGM data. Cool conifer forests in western Georgia were reconstructed as growing more than 1000 m lower than they grow today. The few scattered sites with LGM data from the Tien‐Shan Mountains and from northern Mongolia yielded biome reconstructions of steppe and taiga, which are the biomes growing there today.