The Near-Eastern Roots of the Neolithic in South Asia

The Fertile Crescent in the Near East is one of the independent origins of the Neolithic, the source from which farming and pottery-making spread across Europe from 9,000 to 6,000 years ago at an average rate of about 1 km/yr. There is also strong evidence for causal connections between the Near-Eastern Neolithic and that further east, up to the Indus Valley. The Neolithic in South Asia has been far less explored than its European counterpart, especially in terms of absolute (¹⁴C) dating; hence, there were no previous attempts to assess quantitatively its spread in Asia. We combine the available ¹⁴C data with the archaeological evidence for early Neolithic sites in South Asia to analyze the spatio-temporal continuity of the Neolithic dispersal from the Near East through the Middle East and to the Indian subcontinent. We reveal an approximately linear dependence between the age and the geodesic distance from the Near East, suggesting a systematic (but not necessarily uniform) spread at an average speed of about 0.65 km/yr.     

Did farming arise from a misapplication of social intelligence?

The origins of farming is the defining event of human history--the one turning point that has resulted in modern humans having a quite different type of lifestyle and cognition to all other animals and past types of humans. With the economic basis provided by farming, human individuals and societies have developed types of material culture that greatly augment powers of memory and computation, extending the human mental capacity far beyond that which the brain alone can provide. Archaeologists have long debated and discussed why people began living in settled communities and became dependent on cultivated plants and animals, which soon evolved into domesticated forms. One of the most intriguing explanations was proposed more than 20 years ago not by an archaeologist but by a psychologist: Nicholas Humphrey suggested that farming arose from the 'misapplication of social intelligence'. I explore this idea in relation to recent discoveries and archaeological interpretations in the Near East, arguing that social intelligence has indeed played a key role in the origin of farming and hence the emergence of the modern world.     

Radiocarbon dating: The continuing revolution

Radiocarbon (¹⁴C) dating, now in its fifth decade of general use, continues to be the most widely employed method of inferring chronometric age for late Pleistocene and Holocene age materials recovered from archeological contexts. Over the last decade, several technical advances in ¹⁴C studies have provided contexts for a number of significant applications in archeology that were previously either not possible or not practical. These include the extension of the calibrated ¹⁴C time scale into the late Pleistocene and the development of accelerator mass spectrometry (AMS). The contribution of AMS-based ¹⁴C values to the critical evaluation of archeological data is illustrated by considering the problems of dating early plant domestication in the Near East and Mesoamerica, New World Paleoindian human skeletal materials, and European Upper Paleolithic and Mesolithic materials.     

The pre-Natufian Epipaleolithic: long-term behavioral trends in the Levant

Few cultural developments have taken on as much archeological significance as when people began living in villages and producing their own food. The economic, social, technological, and ideological transformations immediately preceding and following these changes were profound. Early models of culture change associated with pre-agricultural societies of the Levant focused on the sudden, late origin of settled farming villages triggered by climate change. Accompanying this new economic and living situation was durable stone-built architecture; intensified plant and animal use; a flourishing of art and decoration; new mortuary traditions, including marked graves and cemeteries; elaborate ritual and symbolic behavior-a new way of life. This new life style arguably had a slow start, but really took off during the Epipaleolithic period (EP), spanning more than 10,000 years of Levantine prehistory from c. 23,000-11,500 cal BP. The last EP phase, immediately preceding the Neolithic, is by far the best-studied in terms of its cultural and economic contributions to questions on the origins of agriculture.1-4 Recently, archeologists have considered the earlier parts of the EP to be more culturally dynamic and similar to the later phase (Natufian) than was previously thought.3-10 The earlier EP is increasingly seen as demonstrating the behavioral variability and innovations that help us to understand the economic, technological, and social changes associated with complex hunter-gatherers of the Natufian and farmers of the Neolithic. This paper traces the cultural and biological developments of the EP period leading up to the Natufian and considers the long-term trajectory of culture change, social complexity, and village life in the Near East.     

Neolithic dairy farming at the extreme of agriculture in northern Europe

The conventional ‘Neolithic package’ comprised animals and plants originally domesticated in the Near East. As farming spread on a generally northwest trajectory across Europe, early pastoralists would have been faced with the challenge of making farming viable in regions in which the organisms were poorly adapted to providing optimal yields or even surviving. Hence, it has long been debated whether Neolithic economies were ever established at the modern limits of agriculture. Here, we examine food residues in pottery, testing a hypothesis that Neolithic farming was practiced beyond the 60th parallel north. Our findings, based on diagnostic biomarker lipids and δ¹³C values of preserved fatty acids, reveal a transition at ca 2500 BC from the exploitation of aquatic organisms to processing of ruminant products, specifically milk, confirming farming was practiced at high latitudes. Combining this with genetic, environmental and archaeological information, we demonstrate the origins of dairying probably accompanied an incoming, genetically distinct, population successfully establishing this new subsistence ‘package’.     

Diversity and multiplicity in the Asian Acheulian

The emergence of the Acheulian Techno-Complex in Asia appears to have occurred quasi-concurrently in the Levant, South Asia, East and South Africa. Throughout many parts of the huge geographical expanse of Asia, as elsewhere, this genesis was followed by the rapid diffusion of Acheulian techno-behaviors. This phenomenon of cultural radiation is attested in the archeological record throughout the Old World by an increased number of occurrences documenting growing demographic trends of Acheulian peoples, into the latter phases of the Middle Pleistocene. The “Homogeneity to Multiplicity Model” (HMM) is used here to provide a window for understanding the mechanisms behind the evolutionary changes observed throughout the very long duration and extensive geographical context of the Asian Acheulian. Since the beginning of the 19th century, Asia has continuously provided archeological evidence that is vital to our understanding of the “Acheulian revolution” and the plausible links it may have had with the appearance and evolution of Homo erectus s. l. The emphasis traditionally put on handaxes as hallmarks of Acheulian culture has falsely led many archeologists to propose models of cultural diffusion that have masked the true nature of the Acheulian as a worldwide phenomenon in which Asia has always played a key role.     

Early hominid hunting and scavenging: A zooarcheological review

Before the early 1980s, the prevailing orthodoxy in paleoanthropology considered Early Stone Age archeological sites in East Africa to represent a primitive form of hominid campsites. The faunal evidence preserved in these sites was viewed as the refuse of carcass meals provided by hominid males in a social system presumptively characterized by sexual division of labor. This interpretation of early hominid life ways, commonly known as the “Home Base” or “Food Sharing” model, was developed most fully by Glynn Isaac.^1–4 As Bunn and Stanford⁵ emphasized, this model was greatly influenced by a paradigm that coalesced between 1966 and 1968, referred to as “Man the Hunter.”⁶     

Mitogenomes from The 1000 Genome Project Reveal New Near Eastern Features in Present-Day Tuscans

Background

Genetic analyses have recently been carried out on present-day Tuscans (Central Italy) in order to investigate their presumable recent Near East ancestry in connection with the long-standing debate on the origins of the Etruscan civilization. We retrieved mitogenomes and genome-wide SNP data from 110 Tuscans analyzed within the context of The 1000 Genome Project. For phylogeographic and evolutionary analysis we made use of a large worldwide database of entire mitogenomes (>26,000) and partial control region sequences (>180,000).

Results

Different analyses reveal the presence of typical Near East haplotypes in Tuscans representing isolated members of various mtDNA phylogenetic branches. As a whole, the Near East component in Tuscan mitogenomes can be estimated at about 8%; a proportion that is comparable to previous estimates but significantly lower than admixture estimates obtained from autosomal SNP data (21%). Phylogeographic and evolutionary inter-population comparisons indicate that the main signal of Near Eastern Tuscan mitogenomes comes from Iran.

Conclusions

Mitogenomes of recent Near East origin in present-day Tuscans do not show local or regional variation. This points to a demographic scenario that is compatible with a recent arrival of Near Easterners to this region in Italy with no founder events or bottlenecks.     

Yield stability: an agronomic perspective on the origin of Near Eastern agriculture

Here we argue that, based on evolutionary, ecological and agronomic considerations, climate change could not have been a suitable background nor a probable cause of plant domestication in the Near East. This thesis is developed based on the year-to-year yield dynamics in traditional rainfed grain farming in semi-arid environments, on the genetic basis that underlies temporal yield dynamics in natural wild cereal populations as well as in traditional farming systems, and upon the recognition that prior to elaborate high capacity and long-range trade networks, yield stability was more important than yield maximization. We also briefly discuss the likely social and cultural responses to subtle and real climatic changes vs. responses to rapid directional environmental trends. Taking into account the agronomic, ecological and genetic aspects discussed, it is suggested that the Near Eastern founder crop assemblage was chosen to function within the normal east Mediterranean precipitation regime, in which good rainy years create the ‘normal surplus’ that sustains farming communities during drought years, and the different crop types provide the system with its compensating ability. A slow (but real) climatic change is unlikely to induce major (revolutionary) cultural changes. Nor would a prominent environmental change provide the proper background for the origins of agriculture because it would abolish the buffering capacity of the system. Therefore, farming cannot function as a sustainable ‘buffering mechanism’ to counterbalance climatic instability causing natural resource depletion.     

The Middle/Later Stone Age transition and cultural dynamics of late Pleistocene East Africa

The Middle to Later Stone Age (MSA/LSA) transition is a prominent feature of the African archeological record that began in some places ~30,000–60,000 years ago, historically associated with the origin and/or dispersal of “modern” humans. Unlike the analogous Middle to Upper Paleolithic transition in Eurasia and associated Neanderthal extinction, the African MSA/LSA record remains poorly documented, with its potential role in explaining changes in the behavioral diversity and geographic range of Homo sapiens largely unexplored. I review archeological and biogeographic data from East Africa, show regionally diverse pathways to the MSA/LSA transition, and emphasize the need for analytical approaches that document potential ancestor‐descendent relationships visible in the archeological record, needed to assess independent invention, population interaction, dispersal, and other potential mechanisms for behavioral change. Diversity within East Africa underscores the need for regional, rather than continental‐scale narratives of the later evolutionary history of H. sapiens.     

Disclosing the origin and diversity of Omani cattle

Among all livestock species, cattle have a prominent status as they have contributed greatly to the economy, nutrition and culture from the beginning of farming societies until the present time. The origins and diversity of local cattle breeds have been widely assessed. However, there are still some regions for which very little of their local genetic resources is known. The present work aimed to estimate the genetic diversity and the origins of Omani cattle. Located in the south‐eastern corner of the Arabian Peninsula, close to the Near East, East Africa and the Indian subcontinent, the Sultanate of Oman occupies a key position, which may enable understanding cattle dispersal around the Indian Ocean. To disclose the origin of this cattle population, we used a set of 11 polymorphic microsatellites and 113 samples representing the European, African and Indian ancestry to compare with cattle from Oman. This study found a very heterogenic population with a markedly Bos indicus ancestry and with some degree of admixture with Bos taurus of African and Near East origin.     

Inferences on population history of a seed chalcid wasp: invasion success despite a severe founder effect from an unexpected source population

Most invasive species established in Europe originate from either Asia or North America, but little is currently known about the potential of the Anatolian Peninsula (Asia Minor) and/or the Near East to constitute invasion sources. Mediterranean forests are generally fragile ecosystems that can be threatened by invasive organisms coming from different regions of the Mediterranean Basin, but for which historical data are difficult to gather and the phylogeographic patterns are still poorly understood for most terrestrial organisms. In this study, we characterized the genetic structure of Megastigmus schimitscheki, an invasive seed‐feeding insect species originating from the Near East, and elucidated its invasion route in South‐eastern France in the mid 1990s. To disentangle the evolutionary history of this introduction, we gathered samples from the main native regions (Taurus Mountains in Turkey, Lebanon and Cyprus) and from the invaded region that we genotyped using five microsatellite markers and for which we sequenced the mitochondrial Cytochrome Oxidase I gene. We applied a set of population genetic statistics and methods, including approximate Bayesian computation. We proposed a detailed phylogeographic pattern for the Near East populations, and we unambiguously showed that the French invasive populations originated from Cyprus, although the available historical data strongly suggested that Turkey could be the most plausible source area. Interestingly, we could show that the introduced populations were founded from an extremely restricted number of individuals that realized a host switch from Cedrus brevifolia to C. atlantica. Evolutionary hypotheses are discussed to account for this unlikely scenario.     

The ripples of "The Big (agricultural) Bang": the spread of early wheat cultivation.

Demographic expansion and (or) migrations leave their mark in the pattern of DNA polymorphisms of the respective populations. Likewise, the spread of cultural phenomena can be traced by dating archaeological finds and reconstructing their direction and pace. A similar course of events is likely to have taken place following the "Big Bang" of the agricultural spread in the Neolithic Near East from its core area in southeastern Turkey. Thus far, no attempts have been made to track the movement of the founder genetic stocks of the first crop plants from their core area based on the genetic structure of living plants. In this minireview, we re-interpret recent wheat DNA polymorphism data to detect the genetic ripples left by the early wave of advance of Neolithic wheat farming from its core area. This methodology may help to suggest a model charting the spread of the first farming phase prior to the emergence of truly domesticated wheat types (and other such crops), thereby increasing our resolution power in studying this revolutionary period of human cultural, demographic, and social evolution.     

Early Eurasian migration traces in the Tarim Basin revealed by mtDNA polymorphisms

The mitochondrial DNA (mtDNA) polymorphisms of 58 samples from the Daheyan village located in the central Taklamakan Desert of the Tarim Basin were determined in this study. Among the 58 samples, 29 haplotypes belonging to 18 different haplogroups were analyzed. Almost all the mtDNAs belong to a subset of either the defined Western or Eastern Eurasian pool. Extensive Eastern Eurasian lineages exist in the Daheyan population in which Northern‐prevalent haplogroups present higher frequencies. In the limited existing Western Eurasian lineages, two sub‐haplogroups, U3 and X2, that are rare in Central Asia were found in this study, which may be indicative of the remnants of an early immigrant population from the Near East and Caucasus regions preserved only in the Tarim Basin. The presence of U3 in modern and archeological samples in the Tarim Basin suggests that the immigration took place earlier than 2,000 years ago and points to human continuity in this area, with at least one Western lineage originating from the Near East and Caucasus regions. Am J Phys Anthropol 142:558–564, 2010. © 2010 Wiley‐Liss, Inc.     

Craniometric data support a mosaic model of demic and cultural Neolithic diffusion to outlying regions of Europe

The extent to which the transition to agriculture in Europe was the result of biological (demic) diffusion from the Near East or the adoption of farming practices by indigenous hunter-gatherers is subject to continuing debate. Thus far, archaeological study and the analysis of modern and ancient European DNA have yielded inconclusive results regarding these hypotheses. Here we test these ideas using an extensive craniometric dataset representing 30 hunter-gatherer and farming populations. Pairwise population craniometric distance was compared with temporally controlled geographical models representing evolutionary hypotheses of biological and cultural transmission. The results show that, following the physical dispersal of Near Eastern/Anatolian farmers into central Europe, two biological lineages were established with limited gene flow between them. Farming communities spread across Europe, while hunter-gatherer communities located in outlying geographical regions adopted some cultural elements from the farmers. Therefore, the transition to farming in Europe did not involve the complete replacement of indigenous hunter-gatherer populations despite significant gene flow from the Southwest Asia. This study suggests that a mosaic process of dispersal of farmers and their ideas was operating in outlying regions of Europe, thereby reconciling previously conflicting results obtained from genetic and archaeological studies.     

Earliest Evidence for Social Endogamy in the 9,000-Year-Old-Population of Basta,Jordan

The transition from mobile to sedentary life was one of the greatest social challenges of the human past. Yet little is known about the impact of this fundamental change on social interactions amongst early Neolithic communities, which are best recorded in the Near East. The importance of social processes associated with these economic and ecological changes has long been underestimated. However, ethnographic observations demonstrate that generalized reciprocity – such as open access to resources and land – had to be reduced to a circumscribed group before regular farming and herding could be successfully established. Our aim was thus to investigate the role of familial relationships as one possible factor within this process of segregation as recorded directly in the skeletal remains, rather than based on hypothetical correlations such as house types and social units. Here we present the revealing results of the systematically recorded epigenetic characteristics of teeth and skulls of the late Pre-Pottery Neolithic community of Basta in Southern Jordan (Figure S1). Additionally, mobility was reconstructed via a systematic strontium (Sr) isotope analysis of tooth enamel of the Basta individuals. The frequency of congenitally missing maxillary lateral incisors in the 9,000-year-old community of Basta is exceptionally high (35.7%). Genetic studies and a worldwide comparison of the general rate of this dental anomaly in modern and historic populations show that the enhanced frequency can only be explained by close familial relationships akin to endogamy. This is supported by strontium isotope analyses of teeth, indicating a local origin of almost all investigated individuals. Yet, the accompanying archaeological finds document far-reaching economic exchange with neighboring groups and a population density hitherto unparalleled. We thus conclude that endogamy in the early Neolithic village of Basta was not due to geographic isolation or a lack of exogamous mating partners but a socio-cultural choice.     

Rethinking the dispersal of Homo sapiens out of Africa

Current fossil, genetic, and archeological data indicate that Homo sapiens originated in Africa in the late Middle Pleistocene. By the end of the Late Pleistocene, our species was distributed across every continent except Antarctica, setting the foundations for the subsequent demographic and cultural changes of the Holocene. The intervening processes remain intensely debated and a key theme in hominin evolutionary studies. We review archeological, fossil, environmental, and genetic data to evaluate the current state of knowledge on the dispersal of Homo sapiens out of Africa. The emerging picture of the dispersal process suggests dynamic behavioral variability, complex interactions between populations, and an intricate genetic and cultural legacy. This evolutionary and historical complexity challenges simple narratives and suggests that hybrid models and the testing of explicit hypotheses are required to understand the expansion of Homo sapiens into Eurasia.     

On the trail of Neolithic mice and men towards Transcaucasia: zooarchaeological clues from Nakhchivan (Azerbaijan)

Transcaucasia comprises a key region for understanding the history of both the hybrid zone between house mouse lineages and the dispersal of the Neolithic way of life outside its Near Eastern cradle. The opportunity to document the colonization history of both men and mice in Transcaucasia was made possible by the discovery of mouse remains accumulated in pits from a 6000‐year‐old farming village in the Nakhchivan (Autonomous Republic of Nakhchivan, Azerbaijan). The present study investigated their taxonomy and most likely dispersal path through the identification of the Mus lineage to which they might belong using a geometric morphometric approach of dental traits distances between archaeological and modern populations of the different Mus lineages of South‐West Asia. We demonstrate that the mouse remains trapped in the deep storage pits of the dwelling belong to the Mus musculus domesticus from the Near East, with dental shapes similar to current populations in Northern Syria. These results strongly suggest that the domesticus lineage was dispersed into Transcaucasia from the upper Euphrates valley by Neolithic migration, some time between the 7th and 5th millennium BC, providing substantial evidence to back up the scenario featuring near‐eastern stimuli in the emergence of agriculture in the South Caucasus. The domesticus mitochondrial DNA signature of the current house mouse in the same location 5000 years later, as well as their turnover towards a subspecies musculus/castaneus phenotype, suggests that early domesticus colonizers hybridized with a later musculus (and maybe castaneus) dispersal originating from south of the Caspian Sea and/or Northern Caucasia. © 2013 The Linnean Society of London     

Mitogenomes from Egyptian Cattle Breeds: New Clues on the Origin of Haplogroup Q and the Early Spread of Bos taurus from the Near East

Background

Genetic studies support the scenario that Bos taurus domestication occurred in the Near East during the Neolithic transition about 10 thousand years (ky) ago, with the likely exception of a minor secondary event in Italy. However, despite the proven effectiveness of whole mitochondrial genome data in providing valuable information concerning the origin of taurine cattle, until now no population surveys have been carried out at the level of mitogenomes in local breeds from the Near East or surrounding areas. Egypt is in close geographic and cultural proximity to the Near East, in particular the Nile Delta region, and was one of the first neighboring areas to adopt the Neolithic package. Thus, a survey of mitogenome variation of autochthonous taurine breeds from the Nile Delta region might provide new insights on the early spread of cattle rearing outside the Near East.

Methodology

Using Illumina high-throughput sequencing we characterized the mitogenomes from two cattle breeds, Menofi (N = 17) and Domiaty (N = 14), from the Nile Delta region. Phylogenetic and Bayesian analyses were subsequently performed.

Conclusions

Phylogenetic analyses of the 31 mitogenomes confirmed the prevalence of haplogroup T1, similar to most African cattle breeds, but showed also high frequencies for haplogroups T2, T3 and Q1, and an extremely high haplotype diversity, while Bayesian skyline plots pointed to a main episode of population growth ~12.5 ky ago. Comparisons of Nile Delta mitogenomes with those from other geographic areas revealed that (i) most Egyptian mtDNAs are probably direct local derivatives from the founder domestic herds which first arrived from the Near East and the extent of gene flow from and towards the Nile Delta region was limited after the initial founding event(s); (ii) haplogroup Q1 was among these founders, thus proving that it underwent domestication in the Near East together with the founders of the T clades.     

Radiocarbon age of carbonate in fruits of Lithospermum from the early Bronze Age settlement of Hirbet ez-Zeraqōn (Jordan)

Uncarbonized fruits of the Boraginaceae occur widely in cultural layers of archaeological sites in the Mediterranean and the Near East. To date, interpreting their origin remains problematic. It is difficult for archaeobotanists to tell whether such fruits were deposited as part of the cultural layer or were introduced post-depositionally. In an attempt to answer this question for the early Bronze Age site of Hirbet ez-Zeraqon (Jordan), we used direct ¹⁴C dating of biogenic carbonate from calcareous fruits of Lithospermum. The radiocarbon ages of seven fossil samples of the fruits suggest that they originate from plants that grew during or around the time of occupation.