A Comparison of Alternative Methods to Viable Count for Indicating Growth of Mycoplasma gallisepticum in Liquid Culture

In an attempt to find a more rapid method than a viable count for estimating growth of Mycoplasma gallisepticum in broth culture, seven alternative methods were each examined for their correlation with viable counts, reproducibility and time taken to obtain results. Opacity measurement was the quickest and showed closest correlation with viable count and also high reproducibility. The other methods examined showed either lack of sensitivity or reproducibility or poorer correlation with viable count.     

A Comparison of Methods to Measure Fitness in Escherichia coli

In order to characterize the dynamics of adaptation, it is important to be able to quantify how a population’s mean fitness changes over time. Such measurements are especially important in experimental studies of evolution using microbes. The Long-Term Evolution Experiment (LTEE) with Escherichia coli provides one such system in which mean fitness has been measured by competing derived and ancestral populations. The traditional method used to measure fitness in the LTEE and many similar experiments, though, is subject to a potential limitation. As the relative fitness of the two competitors diverges, the measurement error increases because the less-fit population becomes increasingly small and cannot be enumerated as precisely. Here, we present and employ two alternatives to the traditional method. One is based on reducing the fitness differential between the competitors by using a common reference competitor from an intermediate generation that has intermediate fitness; the other alternative increases the initial population size of the less-fit, ancestral competitor. We performed a total of 480 competitions to compare the statistical properties of estimates obtained using these alternative methods with those obtained using the traditional method for samples taken over 50,000 generations from one of the LTEE populations. On balance, neither alternative method yielded measurements that were more precise than the traditional method.     

Estimates of Inbreeding in a Natural Population: A Comparison of Sampling Properties

The average inbreeding coefficient f of a population can be estimated in several different ways based solely on the genotypic frequencies at a single locus. The means and variances of four different estimates have been compared. While the four estimates are equivalent when there are two alleles, the best estimates when there are three or more alleles are based upon total heterozygosity (see PDF) where x and y are the expected and observed number of heterozygotes) and the proportion of alleles that are homozygous (see PDF) where k = the number of alleles, a_ii = the number of A_iA_i homozygotes, and 2a_ij = the number of A_iA_j heterozygotes). Both are minimally biased estimates of f and have identical sampling variances when all alleles are equally frequent. However, when alleles have different frequencies, the choice between these two estimates depends on the gene frequencies and the true inbreeding coefficient of a population; f₂ is the best estimate when the true average inbreeding coefficient is suspected to be low or f = 0, while f₁ is best in populations with large average inbreeding coefficients. Approximate sampling variances of these two estimates are given for any f and any number of alleles with arbitrary gene frequencies; these approximations are accurate for samples as small as n = 100. The chi-square and maximum likelihood estimates of f are not as good for realistic sample sizes.     

A multivariate generalization of the FRIEDMAN rank test with application to a problem in molecular biology

A series of experiments was recently undertaken at the National Institutes of Health to ascertain whether tRNA populations are determined by or adapted to the major proteins synthesized by tumor cells. Dissimilarity indices between chromatographic profiles of animoacyl-tRNAs from 11 mouse plasmacytomas and from normal adult mouse liver and brain were calculated and then compared using a multivariate generalization of the FRIEDMAN rank test. This test is described herein, and its use is illustrated with data from the experiments.     

Liquid chromatography determination of 10-hydroxycamptothecin in human serum by a column-switching system containing a pre-column with restricted access media and its application to a clinical pharmacokinetic study

A simple, rapid, sensitive column-switching HPLC method is described for the analysis of the 10-hydroxycamptothecin (HCPT) in human serum. A pre-column containing restricted access media (RAM) is used for the sample clean-up and trace enrichment and is combined with a C18 column for the final separation. The analytical time is 8 min. The HCPT is monitored with fluorescence detector, excitation and emission wavelengths being 385 and 539 nm, respectively. There is a linear response range of 1-1000 ng/ml with correlation coefficient of 0.998 while the limit of quantification is 0.1 ng/ml. The intra-day and inter-day variations are less than 5%. This analytic procedure has been applied to a pharmacokinetic study of HCPT in clinical patients and the pharmacokinetic parameters of one-compartment model are calculated.     

A New Approach to Natural Products Discovery Exemplified by the Identification of Sulfated Nucleosides in Spider Venom

A New Approach to Natural Products Discovery Exemplified by the Identification of Sulfated Nucleosides in Spider Venom@Andrew E. Taggi$Contribution from The Cornell Institute for Research in Chemical Ecology and The Department of Chemistry and Chemical Biology, Baker Laboratory,Cornell UniVersity, Ithaca, New York 14853 @Jerrold Meinwald$Contribution from The Cornell Institute for Research in Chemical Ecology and The Department of Chemistry and Chemical Biology, Baker Lab…     

A Numerical Comparison of Some BAYESian Methods of Estimating a Binomial Parameter

This note considers the optimal and suboptimal sequential and fixed sample size estimation of the unknown binomial parameter, p, for a beta prior distribution for p and under quadratic loss and constant observation cost. A numerical comparison of the methods is presented.     

A Comparison of Methods to Measure Operator Protection Factors in Open-fronted Microbiological Safety Cabinets

Comparative tests to measure operator protection factors in microbiological safety cabinets in accordance with British Standard 5726 have demonstrated good agreement in the results obtained by a microbiological method using a Collison nebulizer and the technique producing an aerosol of potassium iodide. Either method is suitable for testing for operator protection factors in Class I and Class II safety cabinets.
The Collison nebulizer should be considered as the standard aerosol generator for the microbiological method; alternative nebulizers meeting the general requirements of BS 5726 should be compared in performance with this nebulizer if they are to be used for containment tests.
Any microbiological safety cabinet specified for a new installation should have been 'type' tested to ensure compliance with BS 5726. However, in order to ensure adequate performance, on-site commissioning tests (and routine maintenance checks thereafter) are necessary to verify that air velocity, filtration and operator protection factor requirements are met.     

Defining Natural Categories in Acoustic Signals: Comparison of Three Methods Applied to ‘Chick-a-dee’ Call Notes

Chicks were trained to discriminate between two identical boxes on the basis of their position. Subsequently, the colour of parts of the positive (reinforced) box was changed and chicks were retrained. Results showed that chicks were more or less impaired during retraining depending on the spatial distribution of the changed stimuli. Chicks behaved as if a figure (a disc or a spot of dots) painted on a box was irrelevant to them, whereas they did respond to changes in the colour of a uniformly coloured box or of scattered dots painted on a box. Similar results were obtained in simultaneous discrimination learning tasks involving addition of cues (e.g. colour plus position). Addition of cues facilitated learning using boxes the same colour all over or with painted scattered dots, but not using boxes with a disc or a spot of dots. Furthermore, addition of shape and position information had different outcomes depending on the use of three-dimensional objects or of painted figures: learning facilitation occurred only using three-dimensional objects. Results are interpreted in terms of an “object hypothesis”, and the validity and usefulness of traditional terms such as cues is questioned.     

美国香辛料产品质量现状

简述了美国香辛料生产现状、国内质量需求和进口香辛料存在问题以及香辛料发展战略。     

Family Type and Investment in Education: A Comparison of Genetic and Stepparent Families

Data from the U.S. National Education Longitudinal Survey were examined to investigate postsecondary educational investment in two-parent families. Consistent with hypotheses derived from the logic of inclusive fitness theory, contrasting children with two genetic parents with children from stepparent households on a multivariate composite of investment indicators revealed that stepchildren receive significantly less parental support for pursuit of higher education. Univariate tests on the three measures comprising the multivariate composite indicated that relative to children with two genetic parents, stepchildren have parents who (1) delay the start of savings accounts for postsecondary education, (2) put aside less money for subsidizing the costs of higher education, and (3) expect to allocate fewer economic resources to support the first year of postsecondary schooling. Statistical control of child ability, resource availability, and number of family members sharing in parental resources was accomplished in a second multivariate analysis by using child achievement, familial socioeconomic status, and number of financial dependents in each family as covariates. Statistically equating genetic and stepparent families on these measures reduced, but did not eliminate, the investment differences.     

A Comparison of Protein Quantitation Assays for Biopharmaceutical Applications

Dye-based protein determination assays are widely used to estimate protein concentration, however various reports suggest that the response is dependent on the composition and sequence of the protein, limiting confidence in the resulting concentration estimates. In this study a diverse set of model proteins representing various sizes of protein and covalent modifications, some typical of biopharmaceuticals have been used to assess the utility of dye-based protein concentration assays. The protein concentration assays (Bicinchoninic acid (BCA), Bradford, 3-(4-carboxybenzoyl)quinoline-2-carboxaldehyde (CBQCA), DC, Fluorescamine and Quant-i) were compared to the 'gold standard' assay, quantitative amino acid analysis (AAA). The assays that displayed the lowest variability between proteins, BCA and DC, also generated improved estimates when BSA was used as a standard, when compared to AAA derived concentrations. Assays read out by absorbance tended to display enhanced robustness and repeatability, whereas the fluorescence based assays had wider quantitation ranges and lower limits of detection. Protein modification, in the form of glycosylation and PEGylation, and the addition of excipients, were found to affect the estimation of protein concentration for some of the assays when compared to the unmodified protein. We discuss the suitability and limitations of the selected assays for the estimation of protein concentration in biopharmaceutical applications.     

A Comparison of Two Methods to Conduct Material Flow Analysis on Waste Tires in a Small Island Developing State

The disposal of scrap tires is one of the biggest solid waste issues facing some small island developing states (SIDS) in the Caribbean. Dominica is a small Caribbean island nation that seeks to maintain its well‐founded image as the “Nature Island of the Caribbean.” The economy has seen a steadily increasing import of both tires and cars, with no mechanism for exportation of spent tires. This study used data gathered from both government and international sources to estimate the quantity of tires currently on the island and projected each year up to 2020 to determine potential reuse options. We performed a material flow analysis (MFA) using tire import, vehicle registration records, and projected per capita income to determine the expected accumulation of waste tires. Vehicle registration is expected to rise with the island's wealth, which will affect the annual flow of tires. Two methods were used to predict vehicle growth over time. Our analysis showed an average waste tire output from the economy of 47,000 to 50,000 passenger tire equivalents (PTEs) per year, or approximately 470 to 500 short tons per year of mass. Such an output does not justify large expenditures of tire shredding and processing equipment, but whole tire applications may be feasible as potential disposition options. The methods can be easily replicated to give low‐range and high‐range estimates of waste tires disposed in the environment.     

Eye Movement Patterns in Natural Reading: A Comparison of Monolingual and Bilingual Reading of a Novel

Introduction and Method

This paper presents a corpus of sentence level eye movement parameters for unbalanced bilingual first language (L1) and second-language (L2) reading and monolingual reading of a complete novel (56 000 words). We present important sentence-level basic eye movement parameters of both bilingual and monolingual natural reading extracted from this large data corpus.

Results and Conclusion

Bilingual L2 reading patterns show longer sentence reading times (20%), more fixations (21%), shorter saccades (12%) and less word skipping (4.6%), than L1 reading patterns. Regression rates are the same for L1 and L2 reading. These results could indicate, analogous to a previous simulation with the E-Z reader model in the literature, that it is primarily the speeding up of lexical access that drives both L1 and L2 reading development. Bilingual L1 reading does not differ in any major way from monolingual reading. This contrasts with predictions made by the weaker links account, which predicts a bilingual disadvantage in language processing caused by divided exposure between languages.     

Application of a self-organizing map to select representative species in multivariate analysis: A case study determining diatom distribution patterns across France

Ecological communities consist of a large number of species. Most species are rare or have low abundance, and only a few are abundant and/or frequent. In quantitative community analysis, abundant species are commonly used to interpret patterns of habitat disturbance or ecosystem degradation. Rare species cause many difficulties in quantitative analysis by introducing noises and bulking datasets, which is worsened by the fact that large datasets suffer from difficulties of data handling. In this study we propose a method to reduce the size of large datasets by selecting the most ecologically representative species using a self organizing map (SOM) and structuring index (SI). As an example, we used diatom community data sampled at 836 sites with 941 species throughout the French hydrosystem. Out of the 941 species, 353 were selected. The selected dataset was effectively classified according to the similarities of community assemblages in the SOM map. Compared to the SOM map generated with the original dataset, the community pattern gave a very similar representation of ecological conditions of the sampling sites, displaying clear gradients of environmental factors between different clusters. Our results showed that this computational technique can be applied to preprocessing data in multivariate analysis. It could be useful for ecosystem assessment and management, helping to reduce both the list of species for identification and the size of datasets to be processed for diagnosing the ecological status of water courses.     

A Study of the Excretion and Extracellular Products of Natural Phytoplankton in Lake Nakanuma,Japan

Excretion of photosynthetic products by phytoplankton in Lake Nakanuma ranged from 8 to 54% of the total carbon assimilated. Percentage of excretion increased under the conditions of high and very low light intensity, low temperature and nutrient deficiency. Estimated daily production of extracellular products in the lake was about 150 mg C/m² in the summer season and the major components of it were glycolic acid, polysaccharides and polypeptides.     

Comparison of Methods for Assessing Resistance to Meloidogyne arenaria in Peanut

Use of resistant cultivars is a desirable approach to manage the peanut root-knot nematode (Meloidogyne arenaria). To incorporate resistance into commercially acceptable cultivars requires reliable, efficient screening methods. To optimize the resistance screening protocol, a series of greenhouse tests were done using seven genotypes with three levels of resistance to M. arenaria. The three resistance levels could be separated based on gall indices as early as two weeks after inoculation (WAI) using 8,000 eggs of M. arenaria per plant, while four or more weeks were needed when 1,000–6,000 eggs/plant were used. High inoculum densities (over 8,000 eggs/plant) were needed to separate the three resistance levels based on eggs per gram of root within eight WAI. A gall index based on percentage of galled roots could separate the three resistance levels at lower inoculum levels and earlier harvest dates than other assessment methods. The use of eggs vs. second-stage juveniles (J2) as inoculum provided similar results; however, it took three to five more days to collect J2 than to collect eggs from roots. Plant age affected gall index and nematode reproduction on peanut, especially on the susceptible genotypes AT201 and D098. The genotypes were separated into their correct resistance classes when inoculated 10 to 30 days after planting, but were not separated correctly when inoculated on day 40.     

Facultative sex ratio shifts by a herbivorous insect in response to variation in host plant quality

Summary We tested predictions of sex allocation theory with a series of field experiments on sex allocation in an herbivorous, haplodiploid, sawfly, Euura lasiolepis. Our experiments demonstrated the following points. 1) Adult females allocated progeny sex in response to plant growth. 2) Population sex ratios varied in response to plant quality, being male-biased where plant growth was slow and female-biased where plant growth was rapid. 3) Family sex ratios varied in response to plant quality, being male-biased on slow-growing plants and female-biased on rapidly-growing plants. 4) Female fitness increased more rapidly as the result of developing on more rapidly-growing plants than male mass. We conclude from these results that there are unequal returns on investment in male and female progeny. This results in facultatively biased sawfly sex ratios as an adaptive response to variation in plant quality.     

Plant Establishment from the Seed Bank of a Degraded Floodplain Wetland: A Comparison of Two Alternative Management Scenarios

There has been little research examining the soil seed banks of degraded floodplain wetlands and their contribution to wetland rehabilitation in Australia. Our aim was to assess the establishment of plants from the seed bank that may occur following the delivery of an environmental water allocation to Kanyapella Basin, a 2950 ha wetland located on the floodplain of the Goulburn and Murray Rivers in northern Victoria, Australia. Two hypothetical water regimes were investigated (flooded and dry) in a glasshouse experiment, where plants were left to establish from the seed bank over a period of 124 days. Differences in the establishment of plants from the seed bank indicated that the return of a flooding regime is likely to have a significant effect on the composition of the wetland vegetation. Mapping of the distribution of plant species indicated that propagules were highly dispersed across the wetland for the majority of taxa, in contrast to the localised distribution of many of the plant species represented in the extant vegetation. Inundation favoured the establishment of native wetland and floodplain plants, although many areas of Kanyapella Basin that are currently ‘weed-free’ have the potential to become colonised and potentially dominated by introduced plants if the wetland is not managed appropriately. Overall, results supported the aim of management to reestablish a wetting and drying regime through use of an environmental water allocation. This study presents a significant example of the application of seed bank investigations in wetland ecology and management.