Vertical stratification of invertebrate assemblages in water-filled treeholes of a temperate deciduous forest

Water-filled treeholes provide temporal habitats and resources to detritus-based aquatic organisms in the aboveground forest strata. Treeholes are found at different vertical positions, and are often surrounded by dense understory vegetation, which may affect water volume and litter weight. Differences in water volume and litter weight are indicative of the habitat quantity and the quality of treehole communities. Therefore, in the present study, we used containers as artificial treeholes to examine the effects of these characteristics on treehole invertebrate assemblages in a broad-leaf deciduous forest in central-eastern Japan. We first generated two models: a direct-effect model that reflected the physical and chemical properties of treeholes (water volume, litter weight, and other measurable properties that might directly influence invertebrate survival and fitness); and an indirect-effect model that reflected the differences in vertical position and surrounding understory vegetation per se. We compared these models and found that species richness is better explained by the direct-effect model, whereas the indirect-effect model plausibly explains the differences in invertebrate abundances. Further analyses revealed that some species such as Tripteroides bambusa utilized lower treeholes, while higher treeholes had a greater abundance of Ceratopogonidae sp. A within dense understory vegetation. Our study demonstrates that treehole invertebrates are not only influenced by simple physicochemical properties, but also by ambient conditions. However, the response patterns were highly variable across species. Our approach provides insight for elucidating the key drivers of treehole detritivore diversity in vertically stratified environments.     

On ecology of post-fire soil fungi: assessing impact of disturbance using species-abundance models as measure of community organization

Mediterranean ecosystems are among those most significantly modified by fires. Such fires lead to evident disturbance of the above- and below-ground ecosystem components, at various spatial and temporal scales, including soil microfungi. The ecological parameters used to measure the effects of disturbance on soil fungal communities include species-abundance distribution patterns, which reflect changes in the relationships between species numbers and their relative abundance, and serve as a critical measure of community organization. Species-abundance distribution patterns were used to assess the disturbance impact of experimental fires on soil fungal communities in Mediterranean maquis (southern Italy) in the short- to mid-term. The trend in the distribution patterns of heat-stimulated and xerotolerant soil fungi over time, their varying responses to low- and high-intensity fire, the efficiency of the soil germplasm bank, and the pivotal role of Neosartorya spp. in post-fire community structure in Mediterranean burned soils may all be used as tools to accurately assess the effects of fire on soil mycobiota.     

Exotic vine invasions following cyclone disturbance in Australian Wet Tropics rainforests: A review

The Australian Wet Tropics region extends for almost 900 000 ha along the coastline of north‐east Queensland. The rainforests in this region have a rich and unique biodiversity and are World Heritage listed by UNESCO. Disturbance from tropical cyclones is a significant driver of the rainforest dynamics in this area, and when frequent or intense can facilitate the recruitment and expansion of exotic invasive species. Exotic vines are of particular concern for forest conservation as they can be highly competitive with native vegetation and may prevent forest regeneration. This literature review found evidence that fragmented forests, which are very common in the Australian Wet Tropics, are vulnerable to post‐cyclone vine invasion. In particular, although the diversity and abundance of herbaceous vines tend to decline as the canopy closes 2 years post‐cyclone disturbance, woody exotic vines and scramblers may persist for much longer or even increase in numbers. Since forest recovery in these systems is influenced by the severity and recurrence of disturbance, an increase in cyclone intensity under climate change may cause rapid changes in rainforest structure, composition and diversity, and increase exotic vine invasion. Post‐cyclone management of vines appears to require direct intervention, with manual cutting being currently the most effective method. However, there are a number of difficulties to its wide implementation in Australia, and further study on options for control is needed. Abstract in Spanish is available with online material.     

Prolonged recovery time after eruptive disturbance of a deep-sea hydrothermal vent community

Deep-sea hydrothermal vents are associated with seafloor tectonic and magmatic activity, and the communities living there are subject to disturbance. Eruptions can be frequent and catastrophic, raising questions about how these communities persist and maintain regional biodiversity. Prior studies of frequently disturbed vents have led to suggestions that faunal recovery can occur within 2–4 years. We use an unprecedented long-term (11-year) series of colonization data following a catastrophic 2006 seafloor eruption on the East Pacific Rise to show that faunal successional changes continue beyond a decade following the disturbance. Species composition at nine months post-eruption was conspicuously different than the pre-eruption ‘baseline'' state, which had been characterized in 1998 (85 months after disturbance by the previous 1991 eruption). By 96 months post-eruption, species composition was approaching the pre-eruption state, but continued to change up through to the end of our measurements at 135 months, indicating that the ‘baseline'' state was not a climax community. The strong variation observed in species composition across environmental gradients and successional stages highlights the importance of long-term, distributed sampling in order to understand the consequences of disturbance for maintenance of a diverse regional species pool. This perspective is critical for characterizing the resilience of vent species to both natural disturbance and human impacts such as deep-sea mining.     

Food web of macroinvertebrate community in a Yangtze shallow lake: trophic basis and pathways

No detailed food web research on macroinvertebrate community of lacustrine ecosystem was reported in China. The present study is the first attempt on the subject in Lake Biandantang, a macrophytic lake in Hubei Province. Food webs of the macroinvertebrate community were compiled bimonthly from March, 2002 to March, 2003. Dietary information was obtained from gut analysis. Linkage strength was quantified by combining estimates of energy flow (secondary production) with data of gut analysis. The macroinvertebrate community of Lake Biandantang was based heavily on detritus. Quantitative food webs showed the total ingestion ranged from 6930 to 36,340 mg dry mass m⁻² bimonthly. The ingestion of macroinvertebrate community was higher in the months with optimum temperature than that in other periods with higher or lower temperature. Through comparison, many patterns in benthic food web of Lake Biandantang are consistent with other detritus-based webs, such as stream webs, but different greatly from those based on autochthonous primary production (e.g. pelagic systems). It suggests that the trophic basis of the web is essential in shaping food web structure. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

The ecology of conifer persistence in tropical rainforests: Podocarpus neriifolius in northern Thailand

Plant Ecology - A range of hypotheses seek to explain why conifers are infrequent in tropical rainforests. Here, we explore how the conifer, Podocarpus neriifolius, persists at low density in...     

The recovery of benthic foraminifera and bacteria after disturbance: experimental evidence

In experiments with living meiofauna, sediment is often sieved prior to incubation. This is primarily to remove macrofauna and to increase reproducibility among replicates. At the onset of the experiment, the bacteria are severely disturbed. The effects of these disturbances are ill-known but might affect the outcome of the experimental meiofaunal and biogeochemical studies substantially.We compared the disturbance induced by sieving with the disturbance in microcosms from which meiofauna was removed by flushing with argon. Both experimental situations were compared with untreated cores and the field situation. Neither sieving nor flushing induced changes in the composition of the foraminiferal community compared with the natural situation; the four most abundant species found in the field remained dominant during the experiment. Sieving led to a pronounced disturbance in both bacterial as well as foraminiferal abundance patterns. The depth distribution of some species seems to be related to food, although bacteria might play a regulating role as well.     

The ecology of a diatom community in a thermal stream

From 1964 to 1967 the annual variations in the relative abundance of diatoms in a thermal stream draining a hot spring were examined for changes in species diversity (H) and redundancy (R). Despite large seasonal changes in abundance and shifts in the species composition, the values in general did not deviate significantly from the calculated mean diversity value. This relative constancy of H was interpreted as an indication of diatom community stability. The species exhibited a characteristic pattern of seasonal abundance that is thought be to partially attributable to a light adaptation phenomenon. Three cores were obtained from the soft sediment of the spring and were analysed for diatom remains. The cores were dated by a pumice layer of known age and interpretations relative to the ontogeny of the diatom community added a significant time dimension to the yearly diatom analysis.     

The metacommunity concept: a framework for multi-scale community ecology

The metacommunity concept is an important way to think about linkages between different spatial scales in ecology. Here we review current understanding about this concept. We first investigate issues related to its definition as a set of local communities that are linked by dispersal of multiple potentially interacting species. We then identify four paradigms for metacommunities: the patch‐dynamic view, the species‐sorting view, the mass effects view and the neutral view, that each emphasizes different processes of potential importance in metacommunities. These have somewhat distinct intellectual histories and we discuss elements related to their potential future synthesis. We then use this framework to discuss why the concept is useful in modifying existing ecological thinking and illustrate this with a number of both theoretical and empirical examples. As ecologists strive to understand increasingly complex mechanisms and strive to work across multiple scales of spatio‐temporal organization, concepts like the metacommunity can provide important insights that frequently contrast with those that would be obtained with more conventional approaches based on local communities alone.     

Self-transcendence as a measure of spirituality in a sample of older Australian twins.

Measures of self-transcendence, physical health and psychological well-being were included in a self-report Health and Lifestyle questionnaire administered to Australian twins aged over 50 between 1993 and 1995. Self-transcendence appears to be higher among older Australian women than men, and was significantly associated with religious affiliation, marital status (in women) and age (in men). No strong correlations were observed between self-transcendence and any measure of psychological or physical health. Additive genetic effects were found to be important in influencing self-transcendence, with heritability estimates of 0.37 and 0.41 for men and women respectively, whilst shared environment effects were not found to be significant. Multivariate modelling of self-transcendence scores and self-reported church attendance behavior indicated substantially different etiologies for these variables, with implications for methods of investigation of religiosity and spirituality.     

Fish community reassembly after a coral mass mortality: higher trophic groups are subject to increased rates of extinction

Since Gleason and Clements, our understanding of community dynamics has been influenced by theories emphasising either dispersal or niche assembly as central to community structuring. Determining the relative importance of these processes in structuring real‐world communities remains a challenge. We tracked reef fish community reassembly after a catastrophic coral mortality in a relatively unfished archipelago. We revisited the stochastic model underlying MacArthur and Wilson's Island Biogeography Theory, with a simple extension to account for trophic identity. Colonisation and extinction rates calculated from decadal presence‐absence data based on (1) species neutrality, (2) trophic identity and (3) site‐specificity were used to model post‐disturbance reassembly, and compared with empirical observations. Results indicate that species neutrality holds within trophic guilds, and trophic identity significantly increases overall model performance. Strikingly, extinction rates increased clearly with trophic position, indicating that fish communities may be inherently susceptible to trophic downgrading even without targeted fishing of top predators.     

The ecology of chytrids in aquatic ecosystems: roles in food web dynamics

Chytrids are very important components of freshwater ecosystems, but the ecological significance of this group of fungi is not well understood. This review considers some of the significant environmental factors affecting growth and population composition of chytrids in aquatic habitats. The physical factors include primarily salinity, dissolved oxygen concentration and temperature. The biological factors include the role of chytrids as saprobes and parasites and methods of dispersal of propagules throughout the ecosystem. Dispersal depends upon both zoospores for short range and whole thalli for long range dispersal. Five roles for chytrids in food-web dynamics are proposed: (1) chytrid zoospores are a good food source for zooplankton, (2) chytrids decompose particulate organic matter, (3) chytrids are parasites of aquatic plants, (4) chytrids are parasites of aquatic animals and (5) chytrids convert inorganic compounds into organic compounds. New molecular methods for analysis of chytrid diversity in aquatic environments have the potential to provide accurate quantitative data necessary for better understanding of ecological processes in aquatic ecosystems.     

Long-term recovery from mine drainage disturbance of a macroinvertebrate community in the Ichi-kawa River,Japan

The effects of mine drainage on a benthic macroinvertebrate community and its recovery have been investigated for 25 years in the Ichi-kawa River in western Japan, focusing especially on change in community structure. Concentrations of arsenic, copper and zinc in the water were distinctly higher at sites just below the drainage than an upstream reference site before mine closure in 1973. Benthic communities there were severely damaged, as evidenced by reductions in the number of families and biomass. Chironomidae and a mayfly, Epeorus latifolium, predominated at the impacted sites, whereas stenopsychid caddisflies were dominant at the reference site. After mine closure, zinc concentrations significantly decreased downstream, although they remained higher than at the reference site. Following this, family richness and biomass of benthic communities clearly increased. In addition, the percentage of Trichoptera increased and, finally, Stenopsychidae became the dominant family in 1996 at all sites except just below the drainage. Therefore, the dominance of Stenopsychidae at the impacted sites is expected to be an indicator of complete recovery of the benthic community from the effect of mine drainage.     

The potential role of microzooplankton in a northwestern Australian pelagic food web

The role of microzooplankton in waters adjacent to Australia's North West Cape (21°49'S 114°14'E) was studied during the austral summers 1997/1998 and 1998/1999. We estimated microzooplankton abundance and biomass at a shallow (∼20 m) shelf station and at a shelf break station (∼80 m). Microzooplankton were placed into six categories: four ciliate groups (strombidiids, strobilidiids, tintinnids, “other ciliates”), dinoflagellates, and sarcodines. Total microzooplankton abundances ranged between 0.14×10³ l^-1 and 3.4×10³ l^-1. The most abundant groups were the dinoflagellates (mean 459±73 standard error l^-1) and strombidiids (mean 334±42 standard error l^-1). Total microzooplankton biomass ranged between 0.03 and 1.70 µg C l^-1 (mean 0.33±0.05 standard error l^-1). Redundancy analysis indicated differences in microzooplankton community composition between stations and sampling years but no differences with sampling depth. The microzooplankton community showed considerable variability between adjacent sampling dates, reinforcing the conclusion of earlier studies that this area is a dynamic environment. Ciliate production on the shelf was estimated to be 1.05 µg C l^-1day^-1 (∼20 mg C m^-2day^-1) and 0.79 µg C l^-1day^-1(∼70 mg C m^-2day^-1) at the shelf break. Ciliate production near North West Cape was two- to six-fold higher than the rate of secondary production by juvenile copepods. Despite this, ciliate grazing appears to account for only ∼5% of primary production and ciliates do not appear to be a major conduit between primary producers and higher trophic levels in these waters.     

The community ecology of pathogens: coinfection,coexistence and community composition

Disease and community ecology share conceptual and theoretical lineages, and there has been a resurgence of interest in strengthening links between these fields. Building on recent syntheses focused on the effects of host community composition on single pathogen systems, we examine pathogen (microparasite) communities using a stochastic metacommunity model as a starting point to bridge community and disease ecology perspectives. Such models incorporate the effects of core community processes, such as ecological drift, selection and dispersal, but have not been extended to incorporate host–pathogen interactions, such as immunosuppression or synergistic mortality, that are central to disease ecology. We use a two‐pathogen susceptible‐infected (SI) model to fill these gaps in the metacommunity approach; however, SI models can be intractable for examining species‐diverse, spatially structured systems. By placing disease into a framework developed for community ecology, our synthesis highlights areas ripe for progress, including a theoretical framework that incorporates host dynamics, spatial structuring and evolutionary processes, as well as the data needed to test the predictions of such a model. Our synthesis points the way for this framework and demonstrates that a deeper understanding of pathogen community dynamics will emerge from approaches working at the interface of disease and community ecology.     

The Limnotrons: a facility for experimental community and food web research

Experiments with multi-species communities are essential in order to get more insight in the complex interactions between organisms and their biotic and abiotic environment. The Limnotrons are aquatic model ecosystems that have been developed at the NIOO-KNAW Centre for Limnology to study pelagic community dynamics. They are suitable for the controlled study of multi-species interactions at larger spatial and temporal scales. The Limnotrons do not mimic any particular ecosystem, but should be used for the exploration of basic ecological principles. The temperature and mixing conditions in the Limnotrons can be set within narrow limits, whereas light conditions at the water surface are fixed. We show some results of system performance: mixing time, temperature control, light quantity and quality and development of a Cladocera community in a prototype of the Limnotrons. We provide results of an experiment done in four Limnotrons with the chlorophyte Scenedesmus obliquus. All trophic levels (decomposers, primary producers, and secondary producers) could be maintained in the Limnotrons for at least several weeks. Both abiotic and biotic data from the phytoplankton experiment show remarkably similar patterns through time, but had too low statistical power to prove that they are identical. We calculated the numbers of samples required for sufficient power for biomass data from two plankton experiments, and calculate required effect sizes for certain powers for a future set-up with 2×4 Limnotrons. We show that the power of the data is dependent on: the number of samples, the sample volume, the choice of the measurement method and the type of data transformation.     

Food web structure of the fungivorous insect community on bracket fungi in a Bornean tropical rain forest

1. If fungivorous insect diversity is maintained by host specialisation on particular fungi, it should be higher in the tropics than in temperate or boreal regions owing to high macrofungus species diversity. 2. To reveal the community and food web structure of fungivorous insects on bracket fungi, fungivorous insects were collected from 427 fruiting bodies belonging to 22 genera throughout the development and deterioration process in a 3‐ha plot of lowland dipterocarp tropical rain forest on Borneo Island. 3. Eight hundred and twenty‐nine individuals of 82 coleopteran species in 13 families from 111 fruiting bodies of 15 fungal genera were collected. Tenebrionidae and Staphylinidae were most common. Fifty‐three and 19 insect species were observed on Ganoderma and Phellinus, respectively. The numbers of insect species and individuals on a particular fungal genus were positively correlated with the abundance of that fungal genus. 4. Quantitative food web analysis revealed a high degree of specialisation at the whole‐community level. At least 65% of insect individuals were observed on Ganoderma at every stage of development and deterioration. Diverse insects coexist on one dominant fungal genus, Ganoderma, in contrast to our hypothesis. 5. The high abundance of Ganoderma fruiting bodies, which lack obvious defences against insect feeding, probably influences the bracket fungus–insect food web in this tropical rainforest.     

Resilience of tropical rain forests: tree community reassembly in secondary forests

Understanding the recovery dynamics of ecosystems presents a major challenge in the human-impacted tropics. We tested whether secondary forests follow equilibrium or non-equilibrium dynamics by evaluating community reassembly over time, across different successional stages, and among multiple life stages. Based on long-term and static data from six 1-ha plots in NE Costa Rica, we show that secondary forests are undergoing reassembly of canopy tree and palm species composition through the successful recruitment of seedlings, saplings, and young trees of mature forest species. Such patterns were observed over time within sites and across successional stages. Floristic reassembly in secondary forests showed a clear convergence with mature forest community composition, supporting an equilibrium model. This resilience stems from three key factors co-occurring locally: high abundance of generalist species in the regional flora, high levels of seed dispersal, and local presence of old-growth forest remnants.     

Levels of understanding in ecology: interspecific competition and community ecology

Abstract Ecological interpretation has been subject to several divisive controversies, involving, for example, the significance of density dependence and interspecific competition as ecological processes. Generally, resolution has been obtained through compromise and concensus or calls for yet more data. Essentially, both sides in the discussion are seen to have been correct to some extent. As a consequence the debates have been portrayed widely as having been sterile. We agree, but only because they have been conducted at a level so superficial that the relevance of the original criticisms to the theoretical structure of ecology has not been widely appreciated, nor resolved. Debate that deals with ecological generalizations must be conducted at a level appropriate to such aims.