Effects of environmental variation on fitness of singly and multiply sired progenies of Raphanus sativus (Brassicaceae)

Two hypotheses have been proposed concerning possible fitness advantages of multiple paternity. According to the Elbow Room hypothesis, the magnitude of resource partitioning is positively correlated with the genetic diversity of competitors. This leads to the prediction that the mean fitness of competing half-siblings will exceed the mean fitness of competing full-siblings. The Lottery hypothesis suggests that in a patchy environment a genetically diverse sibship increases the probability that a mother will produce winning phenotypes for each of several different microsites. Both hypotheses were tested in a greenhouse experiment with wild radish, Raphanus sativus. Progeny derived from factorial crosses were raised in competition as full- or half-siblings. To simulate environmental variation, the experiment was replicated across a gradient of nutrient concentrations. After 9 weeks, the aboveground biomass of all plants was harvested and oven-dried. Although dry weights were strongly influenced by nutrient level, within nutrient classes there were no significant differences in the mean dry weight of full- and half-sib competitors. Thus, there was no evidence for the Elbow Room hypothesis. In addition, there were no significant differences in numbers of winning phenotypes in the two competition regimes. Therefore, there was also no support for the Lottery hypothesis. Although competition regime did not influence the mean fitness of competing progeny, it significantly affected variation in dry weight of seedlings within pots. Higher coefficients of variation in half-sib pots suggest that interference competition may be greater in genetically diverse sibships.     

FITNESS CONSEQUENCES OF OUTCROSSING IN IMPATIENS CAPENSIS: TESTS OF THE FREQUENCY-DEPENDENT AND SIB-COMPETITION MODELS

Using field and greenhouse experiments, we tested two hypotheses that could account for the maintenance of outcrossing in Impatiens capensis. Seedlings derived from cleistogamous (CL) and chasmogamous (CH) flowers were grown under competitive conditions while flanked by neighbors that were either related or unrelated. In both experiments, CH progeny sometimes expressed more phenotypic variability than CL progeny. In the greenhouse experiment, CH progeny attained the same weight as CL progeny, and the relatedness of neighboring plants did not affect the growth of either type. In the field experiment, CL and CH progeny performed similarly when grown with related competitors. However, CH progeny were somewhat larger when planted with nonsibs, while CL progeny were somewhat smaller under those conditions. Thus, there is no evidence that either frequency-dependent selection or the avoidance of competition among siblings favors the maintenance of outcrossing in this species. We also modeled the relative variability of selfed and outcrossed progeny under several reproductive systems. When females mate with one male (progeny are full sibs), selfed progeny are often more variable than outcrossed progeny. When females engage in both selfing and outcrossing, variation among progeny is frequently maximized at an intermediate selfing rate. The sib-competition mechanism, under a range of genetic models, is not apt to promote outcrossing, since selfed progeny are commonly more variable than outcrossed progeny.     

Density-dependent habitat selection in plants

Pea plants exhibit density-dependent habitat selection as they grow. We split the root of a young pea (Pisum sativum L.) so that half grew in one pot and half in an adjacent pot. The rest of the plant remained intact. This is a ‘fence-sitter plant’. Each root-half was exposed either to no competition in its pot or to competitor plants sharing its pot. There were one, two, three or five competitor plants. The total root biomass and the fitness (= dry weight of fruit) of the fence-sitter decreased only slightly and insignificantly in response to increased density of the competitor plants. The fitness of the competing plants decreased with density. The fence-sitter shifted its root system from the pot with competition to that free of competition in proportion to the number of competitors. The fence-sitter apparently invested in each of its two roots so that the ratio between the roots was similar to the ratio between the resources in the pots. This result is analogous to the habitat-matching rule of the ideal free distribution of populations (Fretwell, 1972). We suggest that plants invest in each of their roots until the uptake rate per unit root biomass is equal for all roots. This revised version was published online in July 2006 with corrections to the Cover Date.     

Accurate inference of relationships in sib-pair linkage studies.

Relative-pair designs are routinely employed in linkage studies of complex genetic diseases and quantitative traits. Valid application of these methods requires correct specification of the relationships of the pairs. For example, within a sibship, presumed full sibs actually might be MZ twins, half sibs, or unrelated. Misclassification of half-sib pairs or unrelated individuals as full sibs can result in reduced power to detect linkage. When other family members, such as parents or additional siblings, are available, incorrectly specified relationships usually will be detected through apparent incompatibilities with Mendelian inheritance. Without other family members, sibling relationships cannot be determined absolutely, but they still can be inferred probabilistically if sufficient genetic marker data are available. In this paper, we describe a simple likelihood ratio method to infer the true relationship of a putative sibling pair. We explore the number of markers required to accurately infer relationships typically encountered in a sib-pair study, as a function of marker allele frequencies, marker spacing, and genotyping error rate, and we conclude that very accurate inference of relationships can be achieved, given the marker data from even part of a genome scan. We compare our method to related methods of relationship inference that have been suggested. Finally, we demonstrate the value of excluding non-full sibs in a genetic linkage study of non-insulin-dependent diabetes mellitus.     

Postcopulatory inbreeding avoidance in guppies

In many species, the negative fitness effects of inbreeding have facilitated the evolution of a wide range of inbreeding avoidance mechanisms. Although avoidance mechanisms operating prior to mating are well documented, evidence for postcopulatory mechanisms of inbreeding avoidance remain scarce. Here, we examine the potential for paternity biases to favour unrelated males when their sperm compete for fertilizations though postcopulatory inbreeding avoidance mechanisms in the guppy, Poecilia reticulata. To test this possibility, we used a series of artificial inseminations to deliver an equal number of sperm from a related (either full sibling or half sibling) and unrelated male to a female while statistically controlling for differences in sperm quality between rival ejaculates. In this way, we were able to focus exclusively on postcopulatory mechanisms of inbreeding avoidance and account for differences in sperm competitiveness between rival males. Under these carefully controlled conditions, we report a significant bias in paternity towards unrelated males, although this effect was only apparent when the related male was a full sibling. We also show that sperm competition generally favours males with highly viable sperm and thus that some variance in sperm competitiveness can be attributed to difference in sperm quality. Our findings for postcopulatory inbreeding avoidance are consistent with prior work on guppies, revealing that sperm competition success declines linearly with the level of relatedness, but also that such effects are only apparent at relatedness levels of full siblings or higher. These findings reveal that postcopulatory processes alone can facilitate inbreeding avoidance.     

NEIGHBOR RELATEDNESS AND COMPETITIVE PERFORMANCE IN IMPATIENS CAPENSIS (BALSAMINACEAE): A TEST OF THE RESOURCE PARTITIONING HYPOTHESIS

The Elbow Room hypothesis for the maintenance of sex depends upon the assumption that intraspecific resource partitioning occurs and increases in magnitude with decreasing genetic similarity of competitors. This assumption leads to the prediction that plants should have greater fitness in competition with nonrelatives than in competition with siblings. Moreover, if a population displays fine scale genetic structure and genetic similarity declines with distance, then resource partitioning should increase with increasing geographical distance between the source locations of the competing genotypes. We tested these predictions in a greenhouse experiment by subjecting inbred Impatiens capensis seedlings to four types of competitors: 1) inbred full sibs; 2) inbred nonrelatives from the same source location; 3) inbred nonrelatives from a source location 30 m away; and 4) inbred nonrelatives from another population approximately 1 km distant. Plant dry weight at harvest increased significantly with seed weight and earlier emergence date, decreased significantly with seed weight and earlier emergence date of the competitor, and varied significantly among maternal seed families. However, there was no significant effect of competitor relatedness or distance between parental locations. The experiment therefore failed to support the resource partitioning hypothesis.     

Sibling competition, size variation and frequency-dependent outcrossing advantage in Plantago coronopus

Many plants display limited seed dispersal, thereby creating an opportunity for sibling competition, i.e. fitness-determined interactions between related individuals. Here I investigated the consequences of intra-specific competition, by varying density and genetic composition of neighbors, on the performance of seedlings derived by selfing or outcrossing of the partially self-fertilizing plant Plantago coronopus (L.). Seedlings from eight plants, randomly selected from an area of about 50 m² in a natural population, were used in (i) a density series with either one, four or eight siblings of each cross type per pot and (ii) a replacement series with eight plants per pot where selfed and outcrossed siblings were grown intermixed in varying frequencies. Density had a pronounced effect on plant performance. But, except for singly grown individuals, no differences were detected between selfed and outcrossed progenies in vegetative and reproductive biomass. When grown intermixed, selfed offspring were always inferior to their outcrossed relatives. The magnitude of reduction in performance was dependent on the number of outcrossed relatives a selfed seedling had to compete with, giving rise to a frequency-dependent fitness advantage to outcrossed seedlings. The major result of this study is (i) that the relative fitness of inbred progeny is strongly affected by the type of competitors (inbred or outbred) and (ii) that inbreeding depression varies according to the density and frequency of outbred plants and could be considered as a density- and frequency-dependent phenomenon. It is argued that sibling competition, due to the small genetic neighborhood of P. coronopus, might be an important selective force in natural populations of this species.     

Genomic Predictability of Interconnected Biparental Maize Populations

Intense structuring of plant breeding populations challenges the design of the training set (TS) in genomic selection (GS). An important open question is how the TS should be constructed from multiple related or unrelated small biparental families to predict progeny from individual crosses. Here, we used a set of five interconnected maize (Zea mays L.) populations of doubled-haploid (DH) lines derived from four parents to systematically investigate how the composition of the TS affects the prediction accuracy for lines from individual crosses. A total of 635 DH lines genotyped with 16,741 polymorphic SNPs were evaluated for five traits including Gibberella ear rot severity and three kernel yield component traits. The populations showed a genomic similarity pattern, which reflects the crossing scheme with a clear separation of full sibs, half sibs, and unrelated groups. Prediction accuracies within full-sib families of DH lines followed closely theoretical expectations, accounting for the influence of sample size and heritability of the trait. Prediction accuracies declined by 42% if full-sib DH lines were replaced by half-sib DH lines, but statistically significantly better results could be achieved if half-sib DH lines were available from both instead of only one parent of the validation population. Once both parents of the validation population were represented in the TS, including more crosses with a constant TS size did not increase accuracies. Unrelated crosses showing opposite linkage phases with the validation population resulted in negative or reduced prediction accuracies, if used alone or in combination with related families, respectively. We suggest identifying and excluding such crosses from the TS. Moreover, the observed variability among populations and traits suggests that these uncertainties must be taken into account in models optimizing the allocation of resources in GS.     

POSTPOLLINATION EFFECTS ON SEED PATERNITY: MECHANISMS IN ADDITION TO MICROGAMETOPHYTE COMPETITION OPERATE IN WILD RADISH

After pollen arrives on a stigma, the paternity of seeds may be influenced by microgametophyte competition, maternal choice, genetic complementation between parents, and embryo competition. While microgametophyte competition has been well accepted, the other mechanisms are more difficult to demonstrate, and their effects are often confounded. Here, wild radish plants were pollinated with single and mixed pollen loads, and some plants were stressed such that reproduction was reduced. Effects of pollen donors, maternal families, maternal × paternal interaction, pollen donor number, and stress on fruit abortion, seed number per fruit, seed weight, and total seed weight per fruit were measured. Maternal-plant × pollen-donor interaction effects were found for all variables, indicating that genetic complementation or maternal choice occurred. Values of the components of reproduction were generally higher for multiply sired fruits than for singly sired fruits, indicating that either competition among embryos changed under multiple paternity or maternal choice for multiply sired fruits occurred. Finally, when maternal plants were stressed, the components of reproduction were more strongly affected by seed and fruit paternity. This result indicates that either competitive regimes among embryos were affected by stress or maternal plants become more selective under stress. In both cases where embryo competition might have been an explanation of the results, variation in seed weight within fruits was unaffected, suggesting that competitive regimes were unchanged. Clearly, mechanisms in addition to microgametophyte competition are important in sorting the pollen that arrives on stigmas of wild radish. These data suggest that maternal choice is likely to be important. In addition, these processes are likely to occur in the field, since the effects are stronger in stressed than in control plants.     

PATTERNS OF MULTIPLE PATERNITY IN POPULATIONS OF RAPHANUS SATIVUS

Although multiple paternity has been documented for a large number of species, detailed studies of variation in multiple paternity among broods, individuals, and populations are lacking. We measured the extent of multiple paternity in the multi-seeded fruits of wild radish, Raphanus sativus, from three natural populations in southern California. Every parent sampled produced one or more multiply sired fruits, and, in most plants, over half the fruits analyzed proved to be multiply sired. In all, 75% of the 388 multi-seeded fruits analyzed showed multiple paternity. Among these fruits, the minimum number of paternal donors ranged from one to four, with a mode of two paternal parents. The fraction of multiply sired fruits varied from 68–85% among populations and from 40–100% among plants. Plants were heterogeneous for multiple paternity in the 1984 population. A significant positive correlation between multiple paternity and number of fruits per plant suggests that plants preferentially abort single sired fruits. The total number of mates that could be detected for entire plants ranged from 3–14 with a mode of seven. Multiple paternity is likely to be important in other species producing multi-seeded fruits.     

CORRELATED MATINGS IN THE PARTIAL SELFER MIMULUS GUTTATUS

In partially selfing populations, siblings may be correlated for both selling and paternity. A model of the mating system based upon sampling pairs of progeny from a maternal parent is described. The model separates the correlation of selfing from the correlation of outcrossed paternal alleles and is an approach to paternity analysis suited for larger populations with fewer marker loci. Its parameters determine the components of genetic covariance between sibs and provide information about the average number of fathers in a maternal sibship. Electrophoretic markers were used to obtain estimates of correlated matings for two Mimulus guttatus populations. In both populations, about 50% selfing was observed. For two sibs randomly selected from the same capsule, the correlations of selfing between these sibs were 17% and 12% in the two populations, and the correlations of paternity (the proportion of full-sibs among outcrossed sib-pairs) were 37% and 44%. Sibs from different capsules were not correlated for selfing, and the paternity correlation dropped to near 20% in both populations. However, estimates of correlated matings have high variance, lack statistical independence, and can be difficult to obtain. The use of marker loci with many alleles can alleviate these problems.     

The influence of neighbor relatedness on multilevel selection in the Great Lakes sea rocket

Natural selection can operate at the individual and group level in natural populations. This study investigates the ecological factors that determine the relative importance of individual versus group selection. In particular, it determines how the relatedness of interacting neighbors influences multilevel natural selection in a population of the Great Lakes sea rocket. Focal plants were grown in groups of siblings, groups of plants that were themselves siblings but unrelated to the focal plants, and groups of plants with mixed genotypes. Significant group selection on plant size was observed only when the neighbors were siblings but not when they were unrelated. In sibling groups, individuals with heavier stems had higher fitness, and individuals growing with heavier but shorter neighbors also had higher fitness. Thus, individual and group selection on stem weight operated in the same direction. The detection of group selection in sibling groups can be attributed in part to an increased opportunity for group selection in these groups since sibling groups differed more from one another than the other group types. In addition, the quality of the selective environment in sibling groups may have differed from that for the other group types. Group selection was therefore more prevalent in the most genetically structured sample, in which responses to group selection are also most likely to occur.     

Tests of sib diversification theories of outcrossing in Impatiens capensis: Effects of inbreeding and neighbour relatedness on production and infestation

Several models of the evolution of genetic systems posit very strong frequency-dependent selection acting on small spatial scales; in such circumstances a genetically diverse sibship outperforms a genetically uniform sibship, and genes for mixis may spread in a population. Such selection regimes may derive from resource limitation and/or parasite transmission. We describe a greenhouse experiment designed to test these ideas, using the annual herb Impatiens capensis. Plants were potted in pairs; the genetic variance within pots was manipulated by using progeny from either inbred or outcrossed parents and by using either full sibs or unrelated individuals. Treatment combinations designed to increase genetic diversity resulted in greater phenotypic variance in both morphology and production, though not in the density of spider mites or whiteflies. Despite evidence of resource limitation, there was no effect of genetic diversity on productivity, nor was there an effect on infestation. These results fail to support either the sib competition or the sib contagion theory of outcrossing.     

gerud 2.0: a computer program for the reconstruction of parental genotypes from half‐sib progeny arrays with known or unknown parents

Large groups of related progeny, as can be collected from discrete egg masses or fruits, present excellent opportunities for parentage analysis by allowing the reconstruction of parental genotypes. Current techniques of parental genotypic reconstruction require the knowledge of at least one parental genotype. Here, I present a new computer program that reconstructs parental genotypes when no parents are known, provided that the progeny array contains only full and half siblings. The prospects for successfully reconstructing parental genotypes for such progeny arrays with unknown parents are nearly as good as those for the case when one parent is known with certainty.     

Genetics of obesity in adult adoptees and their biological siblings.

An adoption study of genetic effects on obesity in adulthood was carried out in which adoptees separated from their natural parents very early in life were compared with their biological full and half siblings reared by their natural parents. The adoptees represented four groups who by sampling from a larger population were categorised as either thin, medium weight, overweight, or obese. Weight and height were obtained for 115 full siblings of 57 adoptees and for 850 half siblings of 341 adoptees. In full siblings body mass index (kg/m2) significantly increased with weight of the adoptees. Body mass index of the half siblings showed a steady but weaker increase across the four weight groups of adoptees. There were no significant interactions with sex of the adoptees, sex of the siblings, or (for the half siblings) sex of the common parent. In contrast with the findings in half siblings and (previously) the natural parents there was a striking, significant increase in body mass index between full siblings of overweight and obese adoptees. The degree of fatness in adults living in the same environment appears to be influenced by genetic factors independent of sex, which may include polygenic as well as major gene effects on obesity.     

FITNESS CONSEQUENCES OF MIXED-DONOR POLLEN LOADS IN THE ANNUAL LEGUME CHAMAECRISTA FASCICULATA

We experimentally examined the effects of pollen composition on progeny fitness in the self-compatible, annual plant Chamaecrista fasciculata. Plants were hand-pollinated with single- and mixed-donor pollen loads and with various combinations of self- and outcross pollen. For outcrosses, pollen was obtained from two plants at each of two different distances within the same subpopulation as the female parent. Seedlings from all crosses were planted back into the maternal site. For single-donor crosses, seed weight, progeny fruit production, and overall relative fitness were significantly higher for outcross, as compared to self-treatments, but we found no significant differences among outcross sources. For all fitness components, the value observed for crosses derived from mixed loads was intermediate between the values for the singledonor crosses that comprised the mixed load. In a parallel experiment, an analysis of seed paternity of progeny which resulted from pollen mixtures of self- and outcross pollen showed random paternity in two maternal families, and significant excess of outcross in one family. Our results demonstrate that mixed pollen loads do not confer a fitness advantage to the maternal plant in this species, and that the fitness observed for progeny derived from mixed loads is generally consistent with a hypothesis of random paternity.     

Shifts in reproductive assurance strategies and inbreeding costs associated with habitat fragmentation in Central American mahogany

The influence of habitat fragmentation on mating patterns and progeny fitness in trees is critical for understanding the long-term impact of contemporary landscape change on the sustainability of biodiversity. We examined the relationship between mating patterns, using microsatellites, and fitness of progeny, in a common garden trial, for the insect-pollinated big-leaf mahogany, Swietenia macrophylla King, sourced from forests and isolated trees in 16 populations across Central America. As expected, isolated trees had disrupted mating patterns and reduced fitness. However, for dry provenances, fitness was negatively related to correlated paternity, while for mesic provenances, fitness was correlated positively with outcrossing rate and negatively with correlated paternity. Poorer performance of mesic provenances is likely because of reduced effective pollen donor density due to poorer environmental suitability and greater disturbance history. Our results demonstrate a differential shift in reproductive assurance and inbreeding costs in mahogany, driven by exploitation history and contemporary landscape context.     

High prevalence of multiple paternity within fruits in natural populations of Silene latifolia, as revealed by microsatellite DNA analysis

Data on multiple paternity within broods has been gathered in several animal species, and comparable data in plants would be of great importance to understand the evolution of reproductive traits in a common framework. In this study, we first isolated and characterized six microsatellite loci from the dioecious plant Silene latifolia (Caryophyllaceae). The polymorphism of the loci was assessed in 60 individual females from four different populations. Two of the investigated loci showed a pattern of inheritance consistent with X-linkage. These microsatellite loci were highly polymorphic and therefore useful tools for parentage analysis. We then used four of the markers to determine paternity within naturally pollinated fruits in four European populations. This study revealed widespread multiple paternity in all populations investigated. The minimum number of fathers per fruit varied from one to nine, with population means ranging from 3.4 to 4.9. The number of fathers per fruit was not significantly correlated with offspring sex ratios. High prevalence of multiple paternity within fruits strongly suggest that pollen competition is likely to occur in this species. This may substantially impact male reproductive success and possibly contribute to increase female and offspring fitness, either through postpollination selection or increased genetic diversity. Wide variation in outcrossing rates may be an overlooked aspect of plant mating systems.     

Genetic variation and covariation of aphid life-history traits across unrelated host plants

A central paradigm of life-history theory is the existence of resource mediated trade-offs among different traits that contribute to fitness, yet observations inconsistent with this tenet are not uncommon. We previously found a clonal population of the aphid Myzus persicae to exhibit positive genetic correlations among major components of fitness, resulting in strong heritable fitness differences on a common host. This raises the question of how this genetic variation is maintained. One hypothesis states that variation for resource acquisition on different hosts may override variation for allocation, predicting strong fitness differences within hosts as a rule, but changes in fitness hierarchies across hosts due to trade-offs. Therefore, we carried out a life-table experiment with 17 clones of M. persicae, reared on three unrelated host plants: radish, common lambsquarters and black nightshade. We estimated the broad-sense heritabilities of six life-history traits on each host, the genetic correlations among traits within hosts, and the genetic correlations among traits on different hosts (cross-environment genetic correlations). The three plants represented radically different environments with strong effects on performance of M. persicae, yet we detected little evidence for trade-offs. Fitness components were positively correlated within hosts but also between the two more benign hosts (radish and lambsquarters), as well as between those and another host tested earlier. The comparison with the most stressful host, nightshade, was hampered by low survival. Survival on nightshade also exhibited genetic variation but was unrelated to fitness on other hosts. Acknowledging that the number of environments was necessarily limited in a quantitative genetic experiment, we suggest that the rather consistent fitness hierarchies across very different plants provided little evidence to support the idea that the clonal variation for life-history traits and their covariance structure are maintained by strong genotypexenvironment interactions with respect to hosts. Alternative explanations are discussed.     

EVOLUTIONARY GENETICS OF ALLORECOGNITION IN THE COLONIAL HYDROID HYDRACTINIA SYMBIOLONGICARPUS

Many sedentary, clonal marine invertebrates compete intensively with conspecifics for habitable space. Allorecognition systems mediate the nature and outcome of these intraspecific competitive interactions, such that the initiation of agonistic behavior and the potential for intergenotypic fusion depend strongly on the relatedness of the contestants. The dependence of these behaviors on relatedness, along with the extraordinary precision with which self can be discriminated from nonself, suggest that allorecognition systems are highly polymorphic genetically. However, allotypic specificity of this sort could be produced by any number of genetic scenarios, ranging from relatively few loci with abundant allelic variation to numerous loci with relatively few alleles per locus. At this point, virtually nothing is known of the formal genetics of allorecognition in marine invertebrates; consequently, the evolutionary dynamics of such systems remain poorly understood. In this paper, we characterize the formal genetics of allorecognition in the marine hydrozoan Hydractinia symbiolongicarpus. Hydractinia symbiolongicarpus colonizes gastropod shells occupied by hermit crabs. When two or more individuals grow into contact, one of three outcomes ensues: fusion (compatibility), transitory fusion (a temporary state of compatibility), and rejection (incompatibility, often accompanied by the production of agonistic structures termed hyperplastic stolons). Observed patterns of compatibility between unrelated, half-sib pairs, and full-sib pairs show that unrelated and half-sib pairs under laboratory culture have a very low probability of being fusible, whereas full sibs have a roughly 30% rate of fusion in experimental pairings. The genetic simulations indicate that roughly five loci, with 5–7 alleles per locus, confer specificity in this species. In ecological terms, the reproductive ecology of H. symbiolongicarpus should promote the cosettlement of kin, some of which should be full sibs, and some half sibs. Thus, there is potential for kin selection to play a major role in the evolution of the H. symbiolongicarpus allorecognition system. In genetic terms, this system conforms to theoretical predictions for a recognition system selected to distinguish among classes of kin, in addition to self from nonself.