Intracellular anion fluorescence assay for sodium/iodide symporter substrates

The sodium/iodide symporter (NIS) is primarily responsible for iodide accumulation in the thyroid gland for the synthesis of thyroid hormones; however, it can also transport other lyotropic anions in the thyroid gland and nonthyroid tissues. Some NIS substrates have important physiological or clinical roles, and others are environmental contaminants with health-related consequences. The aim of this study was to assess the utility of a yellow fluorescent protein variant, YFP–H148Q/I152L, as a biosensor to monitor the cellular uptake of NIS substrates, including thiocyanate (SCN⁻), nitrate (), chlorate (), perchlorate (), and perrhenate (). The fluorescence of purified YFP–H148Q/I152L was suppressed by anions with an order of potency of > = I⁻ = SCN⁻ = > ? Cl⁻. Anions also suppressed the fluorescence of YFP–H148Q/I152L expressed in FRTL-5, a thyroid cell line with high NIS expression. Quantitation of intracellular concentrations revealed differences among anions in the affinity and maximal velocity of NIS-mediated uptake as well as in the rate constant for passive efflux. These results suggest that YFP–H148Q/I152L can serve as an intracellular biosensor of NIS-transported anions and may be useful to study the physiology of endogenous anions as well as the health-related consequences of environmental anions.     

Inhibition by purine nucleotides of the release of reactive oxygen species from muscle mitochondria: indication for a function of uncoupling proteins as superoxide anion transporters

Release of reactive oxygen species (ROS), measured as the sum of hydrogen peroxide (H₂O₂) and superoxide anion radical (), from respiring rat heart and skeletal muscle mitochondria was significantly decreased by millimolar concentrations of GTP or GDP. Attempts to differentiate between the two forms of ROS showed that the release of rather than that of H₂O₂ was affected. Meanwhile, intramitochondrial ROS accumulation, measured by inactivation of aconitase, increased. These results suggest that guanine nucleotides inhibit the release of from mitochondria. As these nucleotides are known inhibitors of uncoupling proteins (UCPs), it is proposed that UCPs may function as carriers of , thus enabling its removal from the matrix compartment.     

The crystal and molecular structures of dichlorobis (5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine)zinc(II) (1) and dichlorobis(5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine)cobalt(II) (2)

The synthesis and structural studies of the new ligand 5,7-diphenyl-1,2,4-triazolo[1,5-α]pyrimidine (dptp), which can be considered as an analog of purine, and its complexes are described. Complexes were characterised by spectral measurements (IR, NMR, UV-Vis). In addition X-ray structural analysis was performed. Crystals of [Zn(C₁₇H₁₂N₄)₂Cl₂] (1) revealed the following parameters: M_r = 680.9; monoclinic for 2188 observed reflections. [Co(C₁₇H₁₂N₄)₂Cl₂] (2); M_r = 674.4; monoclinic for 1630 observed reflections.     

Protozoan predation on nitrification performance and microbial community during bioaugmentation

The effects of predation on nitrification performance and microbial community during bioaugmentation were investigated. Although most of the nitrification ability of the seed source was lost in the seeded reactors, bioaugmentation significantly enhanced the activity and community of the nitrifiers. The ammonium uptake rate (AUR) increased from 2.59 to 15.25 mg -N/L h and 2.88 to 13.36 mg -N/L h, and the nitrite uptake rate (NUR) increased from 0.80 to 4.02 mg -N/L h and 0.76 to 4.34 mg -N/L h for the reactors with and without protozoa inhibition, respectively. The population of nitrifiers increased, and the dominant nitrite oxidizing bacteria (NOB) transferred from Nitrospira to Nitrobacter. Predation had an evident influence on the microbial community of nitrifiers, especially the K-strategist, which was more vulnerable to predation than r-strategist during bioaugmentation due to its low growth rate. However, predation did not have a significant effect on the nitrification performance.     

Mutations at position 1122 in the catalytic domain of the mouse ras-specific guanine nucleotide exchange factor CDC25 originate both loss-of-function and gain-of-function proteins

The role of two residues within the catalytic domain of CDC25^Mm, a mouse ras-specific guanine nucleotide exchange factor (GEF), was investigated by site-directed mutagenesis. The function of the mutant proteins was tested in vivo in both a Saccharomyces cerevisiae cdc25 complementation assay and in a mammalian fos-luciferase assay, and in in vitro assays on human and yeast Ras proteins. Mutants CDC25 and CDC25 were shown to be (partly) inactive proteins, similar to their yeast homologs. Mutant CDC25 showed higher nucleotide exchange activity than the wild type protein on the basis of both in vitro and in vivo assays. Thus, alanine and valine substitutions at position 1122 within the GEF catalytic domain originate mutations with opposite biological properties, indicating an important role for position 1122 in GEF function.     

A facile synthesis of 5-thio-l-fucose and 5-thio-d-arabinose from d-arabinose

5-Thio-l-fucopyranose tetraacetate was synthesized in 11 steps from or d-arabinose diethyl dithioacetal by one-carbon elongation at C-5. Highly diastereo-selective addition of MeLi in ether to a derivative was achieved to give the corresponding 6-deoxy-β-d-altrofuranose isomer in good yield. A sulfur atom was introduced at C-5 of 6-deoxy-d-altrofuranose derivatives via substitution of a 5-tosylate with KSAc in HMPA with inversion of configuration, giving 5-thio-l-fucopyranose. A derivative was also prepared from 6-deoxy-β-d-altrofuranose derivatives. 5-Thio-d-arabinopyranose tetraacetate, the 5-demethyl analog of 5-thio-l-fucose, was also synthesized from in 5 steps. 5-Thio-d-arabinose showed weak inhibitory activity against α-l-fucosidase from bovine kidney (K_{i = 0.77 mM}).     

Alkyl dehydrogenation in iridium tri-cyclopentyl phosphines

The iridium cyclooctadiene complex incorporating a tricyclopentyl phosphine ligand (PCyp₃), Ir(η²:η²-C₈H₁₂)(PCyp₃)Cl, has been prepared. Removal of the chloride from this complex using in CH₂Cl₂/arene solvent results in dehydrogenation (C-H activation followed by β-H transfer) of one of the alkyl phosphine rings and formation of the complexes (X = H, F) which contain a hybrid phosphine-alkene ligand. These complexes are formed alongside another product (5-20% yield) that has been identified as , which can be prepared in high yield by an alternative, and slightly modified, route. This complex is with a minor isomer that has been tentatively identified as , which results from allylic C-H activation of cyclooctadiene. Addition of H₂ to and its isomer in arene solvent (C₆H₅X, X = F, H) forms the dihydrido η⁶-arene Ir(III) complexes . In contrast, hydrogenation in CH₂Cl₂ alone results in the formation of in which the anion is now acting as a ligand through one of its aryl rings. The fluorobenzene complex can be cleanly converted to by addition of the hydrogen acceptor tert-butylethene (tbe).     

A trade-off relationship between energetic cost and entropic cost for in vitro evolution

In this paper, we consider two complementary cost functions for the landscape exploring processes to obtain the global optimum sequence through in vitro evolution protocol: one is the entropic cost C_etp, which is based on the deviation from the uniformity of a mutant distribution in sequence space, and the other is the energetic cost C_eng, which is based on the total number of sequences to be generated and evaluated. Based on a prior knowledge about the structure of a given fitness landscapes, the conductor of the experiment can think up the efficient search algorithm (ESA), which requires the minimum number of points (=sequences) to be searched up to the global optimum. For five typical fitness landscapes, we considered their respective (putative) ESA, and based on the ESA. As a result, we found a trade-off relationship between and for every case, that is, is approximately equal to the logarithm of the volume of the sequence space. and are interpreted in terms of the information-theoretic concepts.     

NAD(P)H- and superoxide-dependent nitric oxide degradation by rat liver mitochondria

Mitochondria consume nitric oxide (NO) mainly through reaction with superoxide anion (). Here, we analyzed the sources for NO degradation by isolated rat liver mitochondria. Electron leakage from complex III and reverse electron transport to complex I accounted for -dependent NO degradation by mitochondria in the presence of a protonmotive force. Mitochondria incubated with NAD(P)H also presented intense generation and NO degradation rates that were insensitive to respiratory inhibitors and abolished after proteinase treatment. These results suggest that an outer membrane-localized NAD(P)H oxidase activity, in addition to the electron leakage from the respiratory chain, promotes -dependent NO degradation in rat liver mitochondria.     

Dinuclear gold(III) pyrazolato complexes - Synthesis, structural characterization and transformation to their trinuclear gold(I) and gold(I/III) analogues

The reaction of AuCl₃py with Na(pz∗) (pz∗ = pyrazolato, or substituted pyrazolato anion) yields stable dinuclear [cis-Au^IIICl₂(μ-pz∗)]₂ complexes. In the presence of a base, the latter undergo reduction with concomitant transformation of the dinuclear -structure to trinuclear Au^I, Au^III (containing trans Au^IIICl₂-centres) and species.     

Novel structural variation of silver(I)-pyridine complexes in nitromethane as studied by X-ray absorption spectroscopy

The XAFS spectra were measured at around the Ag K-edge of the Ag(I) ion in nitromethane (NM) with a variety of concentrations of pyridine (PY). In NM without PY, the Ag(I) ion is tetrahedrally solvated by four NM molecules similar to those in most solvents. The Ag-O bond length in NM solvent is longer than that in aqueous solution, indicating the low donating ability of NM. The mono-, bis-, tris-, and tetrakis-pyridine complexes are formed in NM by the addition of PY. The EXAFS analyses reveal that the structure of the formed PY complex in NM is linear for Ag(py)(nm)⁺, linear for , triangular for , and tetrahedral for . The longer Ag-O bond length for Ag(py)(nm)⁺ than that for and the release of bound NM molecules at the formation of Ag(py)(nm)⁺ are interpreted to be due to the strong σ donating property of PY. The Ag-N bond length (220 pm) for is intermediate between 216 pm for and 228 pm for . The formation equilibria of and are analyzed on the basis of the changeover of EXAFS spectra as a function of the total concentrations of Ag⁺ and PY in NM.     

Automated in-solution protein digestion using a commonly available high-performance liquid chromatography autosampler

The bleaching of the pyrogallol red (PGR) dye mediated by superoxide anion radicals () generated from the xanthine/xanthine oxidase system (X/XO) was studied by UV-visible spectrophotometry. The absorption band (at 540 nm) of PGR quickly decreased in the presence of X/XO, implying an efficient reaction of with PGR. The process was unaffected by catalase (CAT), but completely abolished by superoxide dismutase (SOD). A mechanism of the reaction involving the consumption of one PGR molecule by two to generate one molecule of H₂O₂ is proposed. PGR was used as a probe to estimate the rate of generation in redox cycling reactions of a series of nitro compounds mediated by rat liver microsomes. The consumption of PGR induced by the redox cycling of nitrofurantoin was totally eliminated by the addition of SOD but unaffected by CAT. The initial rate of consumption of PGR mediated by the redox cycling of others nitro derivatives follows the order:furazolidindione>nitrofurantoin>nifurtimox>benznidazole>chloramphenicol.We concluded that PGR can be used as a probe to estimate the release of from enzymatic systems or from the redox cycling of nitro compounds.     

Determination of dimethylated arginines in human plasma by high-performance liquid chromatography

Using high-performance liquid chromatography (HPLC) with multigradient elution, (asymmetric-DMA, ADMA) and (symmetric-DMA, SDMA) can be separated from human plasma samples. The dimethylarginine compounds in plasma, after extraction with a cation-exchange column, are converted to fluorescent derivatives with o-phthaldialdehyde (OPA) in an alkaline medium and the derivatives are separated simultaneously within 50 min on a reversed-phase column (Ultracarb 3 ODS(20)). The recoveries of ADMA and SDMA are over 80% and the method permits quantitative determination of dimethylated arginines at concentrations as low as 0.1 μmol/l in human plasma.     

Light and nutrient availability affect the size-scaling of growth in phytoplankton

Communities of marine phytoplankton consist of cells of many different sizes. The size-structure of these communities often varies predictably with environmental conditions in aquatic systems. It has been hypothesized that physiological differences in nutrient and light requirements and acquisition efficiencies contribute to commonly observed correlations between phytoplankton community size structure and resource availability. Using physiological models we assess how light and nutrient availability can alter the relative growth rates of phytoplankton species of different cell sizes. Our models predict a change in the size dependence of growth rate depending on the severity of limitation by light and nutrient availability. Under conditions of growth-saturated resource supply, phytoplankton growth rate (mol C ) scales with cell volume with a size-scaling exponent of ; light limitation reduces the size-scaling exponent to approximately , and nutrient limitation decreases the exponent to as a consequence of the size-scaling of resource acquisition. Exponents intermediate between and occur under intermediate availability of light and nutrients and depend on the size-scaling of pigment photoacclimation and the size range examined.     

n-acylation of β-amino alcohol by acyl migration following enzyme-catalyzed esterification

Lipase-catalyzed n-acylations of β-amino alcohols such as ethanolamine and l-serine were investigated. To prepare n-acyl derivatives by taking advantage of the acyl migration, we first carried out a screening of suitable enzymes for the desired reaction. As a result, we found a higher activity for n-acylation with Lipase L. This lipase had higher hydrolytic activity for the o-acyl compound but not the n-acyl compound. The observation shows that n-acylation results from the esterification and successive acyl migration into the amino group. Using Lipase L, we then investigated the n-acylation of ethanolamine or l-serine with fatty acids as acyl donors. The reaction parameters for the n-acylation were clarified.     

Toward prediction of the local onset of alternans in the heart

A beat-to-beat variation in the cardiac action potential duration is a phenomenon known as alternans. Alternans has been linked to ventricular fibrillation, and thus the ability to predict the onset of alternans could be clinically beneficial. Theoretically, it has been proposed that the slope of a restitution curve, which relates the duration of the action potential to the preceding diastolic interval, can predict the onset of alternans. Experimentally, however, this hypothesis has not been consistently proven, mainly because of the intrinsic complexity of the dynamics of cardiac tissue. It was recently shown that the restitution portrait, which combines several restitution curves simultaneously, is associated with the onset of alternans in isolated myocytes. Our main purpose in this study was to determine whether the restitution portrait is correlated with the onset of alternans in the heart, where the dynamics include a spatial complexity. We performed optical mapping experiments in isolated Langendorff-perfused rabbit hearts in which alternans was induced by periodic pacing at different frequencies, and identified the local onset of alternans, B^onset. We identified two regions of the heart: the area that exhibited alternans at B^onset (1:1_alt) and the area that did not (1:1). We constructed two-dimensional restitution portraits for the epicardial surface of the heart and measured the spatial distribution of three different slopes (the dynamic restitution slope, , and two local S1-S2 slopes, S₁₂ and ) separately for these two regions. We found that the S₁₂ and slopes differed significantly between the 1:1_alt and 1:1 regions just before the onset of alternans, and slopes were statistically similar. In addition, we found that the slopes of the dynamic restitution curve S_dyn were also statistically similar between these two regions. On the other hand, the quantitative values of all slopes were significantly different from the theoretically predicted value of one. These results demonstrate that the slopes measured in the restitution portrait correlate with the onset of alternans in the heart.     

The BK channel accessory β1 subunit determines alcohol-induced cerebrovascular constriction

Ethanol-induced inhibition of myocyte large conductance, calcium- and voltage-gated potassium (BK) current causes cerebrovascular constriction, yet the molecular targets mediating EtOH action remain unknown. Using BK channel-forming (cbv1) subunits from cerebral artery myocytes, we demonstrate that EtOH potentiates and inhibits current at lower and higher than ∼15 μM, respectively. By increasing cbv1’s apparent -sensitivity, accessory BK β₁ subunits shift the activation-to-inhibition crossover of EtOH action to <3 μM , with consequent inhibition of current under conditions found during myocyte contraction. Knocking-down KCNMB1 suppresses EtOH-reduction of arterial myocyte BK current and vessel diameter. Therefore, BK β₁ is the molecular effector of alcohol-induced BK current inhibition and cerebrovascular constriction.