Causes of mortality in a Geoffroy’s cat population—a long-term survey using diverse recording methods

We present quantitative data on the impact of different causes of mortality in a Geoffroy’s cat (Leopardus geoffroyi) population inhabiting a protected area and adjacent cattle ranches in central Argentina. Between December 2000 and January 2009, we used three methods to collect data on causes of mortality in both the park and the ranches: (1) information obtained from 35 radio-collared Geoffroy’s cats monitored from 1 to 19 months; (2) a systematic survey of the areas to find non-collared dead animals; and (3) interviews of qualified informants. Deaths of radio-collared individuals in the park were due to predation by puma (Puma concolor) or starvation, whereas deaths in the ranches were attributed to starvation and predation by domestic dogs. The death of eight emigrant cats was attributed mainly to poaching. Cause of death of 39 non-collared Geoffroy’s cats was determined; deaths in the ranches were mainly due to predation by domestic dogs and poaching, whereas deaths in the park were attributed to predation by puma, poaching, and vehicle collision. Grouping all sources of information, human-related mortality accounted for most (62%) of Geoffroy’s cat deaths recorded during this study, with poaching and predation by dogs being the main causes of mortality. This study in Geoffroy’s cats is the first long-term survey of causes of mortality for a population of a small felid species in South America.     

Decline and recovery in otter Lutra lutra populations in Italy

• 1 Changes in otter Lutra lutra distribution in Italy were examined by analysing geographical, historical and survey data.
• 2 As in other European countries, otters declined sharply in Italy during the late 1970s and throughout the 1980s. Between 1985 and 2004 the species became extinct, except for some reintroductions, in northern and most of central Italy while the species appears to have substantially recovered in its southern range. This recovery of the otter population is apparently not due to increased research effort, but reflects a real expansion of range.
• 3 Differences in the degree of range reduction during the second half of the 20th century and in the availability of suitable habitats are probably the major factors that have determined the two opposite trends shown by otter populations in the last 20 years.
• 4 Better knowledge of otter status and distribution is needed for effective conservation management. We suggest that a national survey of the Italian otter population that employs genetic approaches should represent a first step of the national action plan for otter conservation.

     

American bullfrog invasion in Argentina: where should we take urgent measures?

Argentina is the country with the most geographically extended biological invasion of the American bullfrog (Lithobates catesbeianus) in South America after Brazil. Here, we used a maximum entropy ecological niche modeling algorithm (using records of the native range of American bullfrog) to project the model onto the whole of Argentina. We determined the most suitable habitats for this invasive alien species and where we consider urgent measures should be taken. Our projections showed good agreement with known feral populations of American bullfrog in Argentina. By implementing the “Multivariate Environmental Similarity Surface” analysis, we be able to determine that factors such as low precipitations or highest altitudes could be limiting the species’ ability to invade the west and south of the country. We suggest that strategies should focus on detecting established feral populations of the American bullfrog and preventing further introductions or range expansion of feral populations in the northeast portion of the country. Lastly, we report a new feral population of bullfrogs in Argentina.     

Genetic survey of two endangered grasshopper subspecies, Prionotropis hystrix rhodanica and Prionotropis hystrix azami (Orthoptera, Pamphagidae): within- and between-population dynamics at the regional scale

The fragmentation and destruction of natural habitats is one of the major causes of extinction of wild flora and fauna due to human activities. The area around the Mediterranean Basin is particularly affected: this region is one of the world’s richest in terms of biodiversity and is undergoing substantial modification due to extensive changes in land use. We investigated the demographic state (through a genetic survey) of an endangered grasshopper, the geographical distribution of which is restricted to arid open land or glades in south-eastern France. We compared two subspecies: one is severely threatened by the fragmentation of its specific and restricted habitat (Prionotropis hystrix rhodanica in the ‘Crau’ steppe) whereas the other, P.␣h.␣azami, occurs more widely in glades or clearings in the evergreen Mediterranean forest. Genetic diversity at eight microsatellite loci was highly structured, indicating substantial isolation of populations. Within-population diversity was high at all but one site. Genetic drift was the major force involved in this genetic structure, with very little gene flow at the regional scale of observation, consistent with both the limited dispersal of this flightless species and the patchy configuration of its habitat. No significant differences in the extent of genetic diversity or population dynamics were observed between the two subspecies. The observed genetic pattern calls into question the validity of the subspecies status, and shows no strong impact of recent anthropogenic modification of the Crau steppe. The evolution of the Mediterranean xeric and open habitats under both natural and anthropogenic processes is discussed.     

Assessing range re-expansion and recolonization of human-impacted landscapes by threatened species: a case study of the otter (Lutra lutra) in Italy

Detecting and understanding recoveries of threatened species from past and recent presence/absence data is essential to improving conservation efforts. However, false positive trends may be reported because of false absences in past data, therefore appropriate testing is needed. We tested an expansion/recolonization of the otter (Lutra lutra) populations in Italy from a fragmented distribution outlined in the 1984–1985 period by using Monte Carlo simulations. Land-use changes, human depopulation and decrease in influence of anthropogenic features were investigated as potential drivers of recolonization by using GIS modeling. A survey of the entire Italian range of the otter, conducted in 2002–2004, recorded a 2.2-fold increase in the proportion of occupied 10-km squares and 49 local colonizations. The range size and proportion of urban land-use in the 1984–1985 distribution were smaller (P < 0.05) than those derived from simulated surveys based on 49 random false absences versus colonization events. The distribution range expanded southward and nearly reached the southern margins of the peninsula. Recolonization of moderately urbanized landscapes was not accompanied by human depopulation. According to partial logistic regressions, the pure effect of urban land proportion and industry proximity on otter occurrence probability declined by about 48%, suggesting a decreased impact on the stream habitat. Conversely, natural factors, increased in importance by about 116%. The absence of a significant northward expansion in the 20 year period suggests that northward habitat restoration should be planned to encourage further recolonization. On the other hand, potential urban threats in the newly occupied landscapes should be controlled.     

An evaluation of field and noninvasive genetic methods for estimating Eurasian otter population size

Successful conservation and management of rare and elusive species requires reliable estimates of population size, but acquisition of such data is often challenging. We compare the two most frequently used methods of assessing abundance of Eurasian otter (Lutra lutra) populations, noninvasive genetic sampling (NGS) based on genotyping of faeces and field surveys using snow tracking. In a 100-km² oligotrophic otter habitat with linear water bodies, both methods yielded very similar estimates (10–12 individuals). However, in a 100-km² fishpond area, consisting of a complex network of rivers, fishponds, channels and marshes, genotyping of faeces revealed the presence of a higher number of individuals (46–50 genotypes) than the snow survey (38 individuals). NGS data analysed by capture-mark-recapture (CMR)-based software CAPWIRE provided even higher estimates, being twice the number assessed through snow tracking (76–81 individuals, CI_95% = 49–96 and 55–89). Our results suggest that the performance of both NGS and snow tracking is comparable in simple linear habitats, but in complex habitats with very high otter density a combination of genetic and field methods, or CMR analysis using genetic data, is recommended. We emphasise that to obtain reliable estimates using NGS it is necessary to follow strict protocols for detection and elimination of genotyping errors. Based on a literature review and our experience, we suggest improvements that may increase the success rate and efficiency of NGS for otters.     

Unveiling the Limitations of Scat Surveys to Monitor Social Species: A Case Study on River Otters

Abstract: We examined the relationship between the production of sites with feces (i.e., latrines) and river otter (Lontra canadensis) abundance to determine whether scat surveys were adequate for monitoring relative population size for species leaving activity signs in a clumped distribution on the landscape. We conducted winter riparian transects to simultaneously monitor otter abundance via snow tracks and latrine sites along the rivers of Kouchibouguac National Park and surrounding area in New Brunswick, Canada. Our data showed that latrine abundance poorly reflected otter abundance for given stretches of rivers because the relationship was nonlinear and reached a plateau. The number of latrine sites was not related to the time period since last snowfall, which indicated that otters repetitively defecated at the same sites. Individual otters and groups did not produce activity signs over larger distances as a function of time, which indicated that they tend to stay in their home ranges in winter. We discuss why scat survey protocols based on determining presence—absence of a species at predetermined search sites may poorly reflect population size, as well as population fluctuations in time. Caution is advised when interpreting data from such surveys for species for which feces or other activity signs surveyed play a role in intraspecific communication and tend to be in a clumped distribution on the landscape.     

Phylogeography and Pleistocene demographic history of the endangered marsh deer (Blastocerus dichotomus) from the Río de la Plata Basin

The marsh deer is the largest neotropical cervid with morphological and ecological adaptations to wetlands and riparian habitats. Historically, this now endangered species occupied habitats along the major river basins in South America, ranging from southern Amazonia into northern Argentina to the Paraná river delta. This particularly close association with wetlands makes marsh deer an excellent species for studying the effects of Pleistocene climatic changes on their demographic and phylogeographic patterns. We examined mitochondrial DNA variation in 127 marsh deer from 4 areas distributed throughout the Río de la Plata basin. We found 17 haplotypes in marsh deer from Brazil, Bolivia and Argentina that differed by 1–8 substitutions in a 601 bp fragment of mitochondrial control region sequence, and 486 bp of cytochrome b revealed only 3 variable sites that defined 4 haplotypes. Phylogeny and distribution of control region haplotypes suggest that populations close to the Pantanal area in central Brazil underwent a rapid population expansion and that this occurred approximately 28,000–25,000 years BP. Paleoclimatic data from this period suggests that there was a dramatic increase for precipitation in the medium latitudes in South America and these conditions may have fostered marsh deer’s population growth.     

Mitochondrial genetic diversity and structure of the European otter (Lutra lutra) in Britain

The European otter (Lutra lutra) is a focus for conservation efforts throughout Europe due to a population decline in recent decades and because of its importance as a biological indicator of the health of rivers and waterways. The aim of this study was to aid the conservation of this species by adding genetic information from samples originating in the United Kingdom (UK), to help build up a picture of the phylogeographic structure of the European otter throughout Europe. This was done by a comparison of 299 base pairs of the mitochondrial DNA control region. Four haplotypes were identified in the UK, one of which has not been found outside the west of the UK in the wild, and one of which was unique. Populations in the UK, and in particular the west were shown to have a higher haplotype diversity than previously found for the European otter in Europe (h = 0.7338 for the 58 UK otters sampled in this study) and an overall nucleotide diversity of π = 0.003. The western UK population was shown to have a high level of genetic distinctiveness. We discuss possible contributory population processes, the importance of the western UK population for the future conservation of the species and comment on future conservation strategies.     

Eurasian otter (<Emphasis Type="Italic">Lutra lutra</Emphasis>) diet and prey selection in Mediterranean streams invaded by centrarchid fishes

The diet of the Iberian otter (Lutra lutra) was determined by analysing 547 spraints collected at 28 sites within a wide area invaded by centrarchid fishes (pumpkinseed sunfish, Lepomis gibbosus and largemouth bass, Micropterus salmoides): the middle Guadiana basin (South-west Iberian Peninsula). Fish was the otters’ main prey, representing more than 60% of total individuals and more than 80% of total biomass. Otters preyed on most of the fish species captured in the field; however, the consumption of centrarchids was low compared to their abundance in the streams, and Jacobs’ index of preference showed a clear rejection of both species by the otter. Consumption of native fish genera (Squalius, Barbus and Chondrostoma) by otters increased in relation to their increase in the environment. In contrast, increasing numbers of L. gibbosus in the field was not reflected in otter consumption. The general decline of native freshwater fishes in Iberian rivers, the preferred prey of otters, together with the spread of exotic fish species (centrarchids and others) could put otter populations at risk.     

Insights into marine otter (Lontra felina) distribution along the Peru coastline

The marine otter (Lontra felina) has a patchy distribution associated with rocky coastlines along the Pacific coast of South America. In Peru marine otters are found from La Libertad (8°04′S) to Tacna (18°09′S), however, few studies have assessed its population and conservation status. To assess marine otters' current distribution along the Peru coastline, we conducted visual surveys and collected environmental characteristics such as human presence and habitat type. We surveyed 20 locations from five regions where otter presence was based on signs of detection (spraints, food leftovers, tracks, or direct observations). In addition, data on human presence, habitat type, and geographic location were also collected. Across the 20 locations, 268 sections were scanned, and marine otters were detected in 90% (n = 18) of locations and in 19% (n = 52) of sections. Spraints were the most frequent sign detected while direct observations occurred only in seven locations. Our analysis indicates habitat features play an important role in marine otter presence, with habitats with large rocks providing preferred conditions. Our study provides information on marine otter distribution along the Peru coastline that can assist in the identification of locations for focused conservation initiatives and strategies, which should be coordinated among regions to strengthen their design and implementation.     

Woody vegetation structure and composition of the last relicts of Espinal vegetation in subtropical Argentina

Until the beginning of the twentieth century there were extensive subtropical seasonal thorny forests surrounding the Pampas grasslands of Argentina, known as the ‘Espinal’. In central Argentina there still exist relicts of the Espinal, belonging to the ‘Entrerrianense District’. These forests were never described or analyzed in detail. In 2004 we studied 10 randomly located plots of 50 × 2 m. All individuals and stems of woody species were counted and their diameters at breast height (DBH) were measured; individuals with <1 cm DBH were considered juveniles. We recorded 2,300 woody individuals/ha corresponding to 12 species. The more constant species are the palm Trithrinax campestris (100%), Celtis tala (90%), Prosopis alba and Celtis pallida (both 50%). The plots are relatively homogeneous, but once classified with cluster analysis two groups are formed according to the relative abundance of C. tala and T. campestris; the latter species is more frequent in more open or fire-disturbed habitats. The results of Canonical Analysis of Principal coordinates are in agreement with the classification. We postulate that the differences between both groups are caused by a differential degree of disturbance (probably caused by fires). Both dominant species show abundant juveniles, and the invasion by exotic woody species is limited. These forest relicts are among the last remnants of the massive expansions of forests in central Argentina. Besides their historical value, an urgent call is made for their preservation, sustainable use and defence from biological invasions.     

Genetic diversity and population structure in the endangered giant otter, Pteronura brasiliensis

We assessed levels of genetic diversity and investigated patterns of population structure in three remnant populations of the endangered giant otter, Pteronura brasiliensis, using microsatellite loci. All populations displayed moderate to low levels of heterozygosity and allelic richness (H _O 0.56–0.57, A _R 4.00–5.15) and effective population sizes were low (N _E 10.8–54) although only the Iténez population exhibited the signature of a genetic bottleneck. Population structure analyses revealed a pattern in which the populations of the Upper Amazon, Orinoco and Essequibo drainages comprised partially differentiated segments of a northern South American metapopulation, whereas the population of the Iténez appeared isolated. The observed patterns are congruent with previous mitochondrial DNA analysis which suggested the Iténez and northern South American groups constitute two evolutionary significant units. The results presented here should be considered in planning future policies aiming to manage the recovery of the giant otter across its range.     

Natural and anthropogenic factors associated with the distribution of South American sea lion along the Atlantic coast

The aim of this work was to analyse those characteristics of the Atlantic coast that are associated with distribution, abundance and breeding activity of Otaria flavescens at three ecological scales. We followed a research strategy that consists in looking at the variables that are associated with the pattern of distribution at regional and landscape scales, instead of following local population in time. We used bibliographic data of censuses carried out between 1946 and 1997 and a Geographic Information System (GIS) to integrate information proceeding from censuses and different environmental variables. At a regional scale, we found that the distribution of breeding colonies did not vary in the period of time analysed and was associated with the pattern of occupation of the coast and the tide width. There was a significant decrease in abundance between 1946 and 1997. In ‘north-central Patagonia’, the segment of coast with the highest number of sea lions in Argentina, distribution of colonies was associated with islands availability and negatively correlated with places were anthropogenic disturbance was high. At a local scale, breeding colonies were positive associated with slight slope coasts and negatively associated to rocky beaches. We identify those characteristics of the coast associated with distribution of breeding colonies of O. flavescens, which operate at different ecological and temporal scales. Handling editor: K. Martens     

Ancient DNA reveals genotypic relationships among Oregon populations of the sea otter (<Emphasis Type="Italic">Enhydra lutris</Emphasis>)

The sea otter has experienced a dramatic population decline caused by intense human harvesting, followed by a century of recovery including relocation efforts to reestablish the species across its former range in the eastern Pacific. Although the otter was historically present along the coast in Oregon, there are currently no populations in this region and reintroduction efforts have failed. We examined the mtDNA genotypes of 16 pre-harvest otter samples from two Oregon locations in an attempt to determine the best genotypic match with extant populations. Our amplifications of a 222 base-pair portion of the control region from otters ranging in age from approximately 175–2000 years revealed four genotypes. The genotypic composition of pre-harvest otter populations appears to match best with those of contemporary populations from California and not from Alaska, where reintroduction stocks are typically derived.     

Mitochondrial DNA analysis reveals genetic structure in two New Zealand Cook’s petrel (<Emphasis Type="Italic">Pterodroma cookii</Emphasis>) populations

The endangered Cook’s petrel (Pterodroma cookii) is restricted to two separated populations at the extremes of its former range across New Zealand. Prior work revealed morphological, foraging, and reproductive isolation between these two remnant populations. To aid the conservation management of the species, additional information is required on the genetic structure of Cook’s petrel. We used mitochondrial DNA sequences (Cytochrome Oxidase subunit 1 gene), collected from 26 and 19 Cook’s petrel breeding on Little Barrier Island (LBI) and Codfish Island (CDF), respectively, for this preliminary study. We uncovered distinct population genetic structure with analysis of molecular variance suggesting genetic isolation of the populations. Levels of genetic variation were higher in the LBI population (four haplotypes present; h = 0.34 and π = 0.10) whereas the CDF population had only one haplotype that was distinct from the LBI population. Our results indicate that Cook’s petrel constitute two distinct management units for which conservation of genetic as well as behavioural and morphological diversity should be a priority. Further genetic studies using nuclear markers are recommended.     

The reintroduction of the Eurasian otter (Lutra lutra) into the Netherlands: hidden life revealed by noninvasive genetic monitoring

The last recorded presence of the Eurasian otter (Lutra lutra) in the Netherlands dates from 1989 and concerned a dead individual. In 2002 a reintroduction programme was started, and between June 2002 and April 2008 a total of 30 individuals (10 males and 20 females) were released into a lowland peat marsh in the north of the Netherlands. Noninvasive genetic monitoring based on the genetic profiles obtained from DNA extracted from otter faeces (spraints) was chosen for the post-release monitoring of the population. To this end, the founding individuals were genotyped before release and spraints were collected in the release area each winter from 2002 to 2008. From June 2002 to April 2008 we analysed the genetic profile of 1,265 spraints on the basis of 7–15 microsatellite loci, 582 of which (46%) were successfully assigned to either released or newly identified genotypes. We identified 54 offspring (23 females and 31 males): the females started to reproduce after 2 years and the males after 4 years. The mating and reproductive success among males was strongly skewed, with a few dominant males fathering two-thirds of the offspring, but the females had a more even distribution. The effective population size (Ne) was only about 30% of the observed density (N), mainly because of the large variance in reproductive success among males. Most juvenile males dispersed to surrounding areas on maturity, whereas juvenile females stayed inside the area next to the mother’s territory. The main cause of mortality was traffic accidents. Males had a higher mortality rate (22 out of 41 males (54%) vs. 9 out of 43 females (21%)). During winter 2007/08 we identified 47 individuals, 41 of which originated from mating within the release area. This study demonstrates that noninvasive molecular methods can be used efficiently in post-release monitoring studies of elusive species to reveal a comprehensive picture of the state of the population.     

Genetic variability and structure of natural and domesticated populations of Caribbean pine (Pinus caribaea Morelet)

 Isozyme analysis of seed samples derived from natural and managed populations of the tropical pine Pinus caribaea vars ‘bahamensis’ and ‘caribaea’ was used to assess population genetic structure in its native range and to detect changes occurring during early domestication of the species. Baseline data from natural populations of the two varieties showed that populations sampled as seed are characterized by high gene diversity (mean H_e=0.26) and a low level of inbreeding ( mean F_is=0.15). A UPGMA tree of genetic relatedness among populations indicates that the two varieties represent distinct evolutionary units. Within each variety there is significant differentiation among populations, and this is greater for the more fragmented populations of var ‘bahamensis’ (F_st=0.08) than for var ‘caribaea’ (F_st=0.02). Seed from a seed orchard population of var ‘caribaea’ established within its natural range showed no change in genetic diversity but did show a reduced inbreeding coefficient (F_is=0.09) compared with its progenitor populations, suggesting a decrease in selfing and/or biparental inbreeding. A bulked seed sample from an exotic plantation of var ‘bahamensis’ in Australia displayed a large increase in the inbreeding coefficient (F_is=0.324) compared with that found in natural populations, possibly due to elevated self-fertilization. Finally, a bulked seed sample from an exotic plantation population of var ‘caribaea’ from China showed enhanced genetic diversity, an increase in the inbreeding coefficient and more linkage disequilibrium than its presumed progenitor populations. It was also genetically divergent from them. RFLP analysis of chloroplast DNA variation in the Chinese sample suggested that seeds of the related taxa P. elliottii and P. taeda, or seeds derived from hybridization with these taxa growing in the seed production area, had been included in the seed crop during harvesting. We conclude that monitoring of appropriate genetic markers may be an effective means of identifying potentially deleterious genetic changes occurring during forest tree domestication. Received: 10 August 1998 / Accepted: 8 September 1998     

Avian population trends in the vulnerable montane forests of the Northern Appalachians,USA

Declines in bird populations are an important issue facing conservationists. Although studies have documented bird declines in a variety of lowland habitats, montane habitats are generally under represented in these investigations. Nevertheless, montane habitats are vulnerable because of their restricted geographic distribution as well as their exposure to environmental stressors such as atmospheric deposition and climate change. We surveyed birds at 768 points on 42 transects in montane spruce-fir forests the White Mountains of New Hampshire from 1993–2003. We detected 17,479 individuals of 73 species during this period, of which 10 were abundant enough for analyses. Of these 10 species, three exhibited significant population declines during the survey period: Yellow-bellied Flycatcher (Empidonax flaviventris), Bicknell’s Thrush (Catharus bicknelli) and Magnolia Warbler (Dendroica magnolia). Two of these species (Yellow-bellied Flycatcher and Bicknell’s Thrush) are considered ecological indicator species for montane spruce-fir forest. Declines in these species are an indication that recent concern on the part of conservationists about montane spruce-fir forest and the birds that inhabit them are justified. Our observation that these trends were not reflected in the National Breeding Bird Survey (BBS) analyses, and that one high priority species, the Bicknell’s Thrush, did not occur on BBS routes in New Hampshire during the survey period, argues for the importance of continued efforts to monitor these habitats.