Use of bioluminometry for determination of active yeast biomass immobilized in ionotropic hydrogels

The technique of bioluminometry was used to determine the biomass concentration of yeast cells immobilized in ionotropic hydrogel beads, including alginate, pectate, and kappa-carrageenan. The method uses determination of ATP extracted from viable cells, the concentration of which is then expressed as the active biomass concentration. Seven yeast strains divided into three categories (brewing, wine-making, and ethanol-producing yeasts) were tested, and different biomass concentrations were determined in all three immobilization materials. The described method is characterized by a good correlation (up to 99%) to classical dry biomass determination. The method is quicker, easier, and not so laborious, providing sufficient determination accuracy, and can be used for a rapid estimation of viable biomass in most biotechnological processes using immobilized living cells.     

Determination of the Microbial Population in Thermophilic Anaerobic Reactor: Comparative Analysis by Different Counting Methods

This paper describes the determination of the microbial population, in terms of the number, biomass and composition, of single and two-phase, laboratory-scale thermophilic (55°C) anaerobic reactors, under steady-state conditions. Epifluorescence microscopy with DAPI (4′,6-diamidine-2-phenylindole) as fluorochrome was used to determine the total number of micro-organisms in the reactors, and autofluorescence microscopy for the number of the autofluroescent methanogenic populations. The results obtained by the direct count methods were compared to the quantity of biomass contained in the system, determined by volatile suspended solids. The viable bacterial population was determined by plating techniques using an anaerobic chamber. The total bacterial and F420 autofluorescent populations of single-stage digesters increase when the hydraulic retention time decreases; nevertheless, the percentages of the autofluorescent methanogens remain constant at 13%. In the two-stage reactors, the percentages of this group are 99% and 26% of the total population in the acidogenic and methanogenic factors, respectively. In the single-stage reactors, biomass determinations can be used to estimate microbial concentrations, and vice versa, as there is a high positive correlation between microorganism concentration and biomass. It was obtained a high correlation between direct counts by epifluorescence microscopy and viable plate counts for the combined system studied.     

Analysis of mammalian viable cell biomass based on cellular ATP

Analysis of cellular ATP as a means of measuring viable biomass loading was investigated in hybridoma cell culture. ATP analysis by the luciferin-luciferase assay was compared with trypan blue-stained hemocytometer counts. The cell-specific ATP content varied between 2 and 6 fmol per viable cell over a batch culture. ATP levels were highest during exponential growth, and decreased during the stationary and decline phases. Electronic counting and volume measurements were performed to assay the viable cell biomass. Cell sorting, using fluorescein diacetate, was used to separate viable and nonviable cells in cultures with between 35% and 90% viable cells. Viable cells contained over 2 orders of magnitude greater cell-specific ATP than nonviable cells. Cell-specific ATP correlated directly with the viable cell volume rather than viable cell numbers. Over the range of batch culture conditions, ATP analysis should provide a more accurate measurement of hybridoma viable biomass than hemocytometer counts.     

Bioremoval of lead from water using Lemna minor

This study examined the ability of duckweed (Lemna minor) to remove soluble lead from water. The duckweed was obtained from the Devils Lake wastewater treatment plant in North Dakota. The viable aquatic plants were exposed to a single dose of lead (from Pb(NO₃)₂) at a concentration of 5.0 mg/l for a time period of 21 days. Lead concentrations were measured in the water daily and in the biomass at the conclusion of the experiment. All measurements were done in triplicate and performed in accordance with standard methods. These data were used to calculate the removal efficiency with respect to time, and to provide the necessary empirical constants to model the removal behavior. Viable biomass removed 85–90% of the lead, viable duckweed previously exposed to lead removed 70–80% of the lead, non-viable biomass (control group) removed 60–75% of the lead, and there was no removal in the ‘no-biomass' control group. Based on these results we conclude that the viable biomass is effective in removing lead present at sub-lethal levels.     

Quantitative sampling of indoor air biomass by signature lipid biomarker analysis

Exposure to airborne biocontaminants may result in a multitude of health effects and is related to a pronounced increase in adult-onset asthma. Established culture-based procedures for quantifying microbial biomass from airborne environments have severe limitations. Assay of the phospholipid fatty acid (PLFA) components of airborne microorganisms provides a quantitative method to define biomass, community composition and nutritional/physiological activity of the microbial community. By collecting airborne particulate matter from a high volume via filtration, we collected sufficient biomass for quantitative PLFA analysis. Comparing high (filtration) and low (impaction) volume air sampling techniques at 26 locations within the Eastern United States, we determined that PLFA analysis provided a viable alternative to the established but flawed culture-based techniques for measuring airborne microbial biomass and community composition. Compared to the PLFA analysis, the culture techniques underestimated the actual viable airborne biomass present by between one to three orders of magnitude. A case study of a manufacturing plant at which there had been complaints regarding the indoor air quality is presented. Phospholipid fatty acid characterization of the biomass enabled contamination point source determination. In comparison with samples taken outdoors, increases in the relative proportion of trans PLFA, reflecting shifts in the physiological status of viable airborne Gram-negative bacteria, were detected in the indoor air samples at a majority of sampling sites. Received 29 September 1998/ Accepted in revised form 8 January 1999     

A fluorescence assay to determine the viable biomass of microcosm dental plaque biofilms

Dental plaque bacteria form complex and robust cell aggregates which cannot be counted accurately using epifluorescence microscopy. This causes a significant problem for quantifying their viability. The aim of the investigation was to develop a fluorescence assay to quantify the viable biomass of dental plaque biofilms. Using an artificial mouth system, microcosm plaques were grown under a range of fluoride and mineralizing conditions, and were treated with the oral antiseptics chlorhexidine (CHX) and Listerine. Plaques were harvested, made into suspension and stained in microtitre plates with a di-chromatic fluorescent stain (Live/Dead BacLight). The percentage of viable biomass was calculated from the regression data generated from a viability standard. The standard was constructed using different proportions of viable (green fluorescence) and non-viable (red fluorescence) plaque bacteria, and growth conditions for optimizing green fluorescence were investigated. The results from the assay showed that fluoride at 1000 and 3000 ppm promoted plaque viability by at least 15%, from approximately 45 to 60%, and at 5000 ppm to approximately 87% (P<0.05). Plaques treated with Listerine and CHX from d 0 yielded insufficient biomass to be tested for viability, however 14 d post-treatment, viability was comparable to untreated plaques (approximately 55%, P>0.05). Treatment with Listerine and CHX from d 3 reduced biomass but not viability. Development of this assay enabled viability of plaque bacteria which cannot be resolved with epifluorescence microscopy to be evaluated. It offers a rapid alternative to epifluorescence microscopy and could be applied to nonoral bacteria.     

Biomass of the cryptoendolithic microbiota from the Antarctic desert.

Extractable lipid phosphate was used to determine the biomass of the cryptoendolithic microbiota that colonizes sandstone rocks in the Ross Desert region of Antarctica. The mean amount of lipid phosphate was 0.053 micromole/cm2 (n = 9), which equals 2.54 g of C per m2 (range, 1.92 to 3.26 g of C per m2) of biomass in the biotic zone of these rocks. The turnover of phospholipids was comparable to that of temperate sediments and soils (t1/2, 6 to 9 days) at 0 degrees C and a light intensity of 305 micromoles of photons per m2 per s, indicating that this was a good method to measure viable biomass. The biomass was 0.3 to 9.6% of the total carbon content of the biotic zone and was about 2 orders of magnitude smaller than the epilithic lichen dry weight at a location some 7 degrees north in latitude. The cryptoendolithic microbiota had a uniform density throughout the biotic zone under the rock surface. The results indicate that the cryptoendolithic microbial biomass is small but viable in this unique, extreme ecosystem.     

Biomass of the cryptoendolithic microbiota from the Antarctic desert

Extractable lipid phosphate was used to determine the biomass of the cryptoendolithic microbiota that colonizes sandstone rocks in the Ross Desert region of Antarctica. The mean amount of lipid phosphate was 0.053 micromole/cm2 (n = 9), which equals 2.54 g of C per m2 (range, 1.92 to 3.26 g of C per m2) of biomass in the biotic zone of these rocks. The turnover of phospholipids was comparable to that of temperate sediments and soils (t1/2, 6 to 9 days) at 0 degrees C and a light intensity of 305 micromoles of photons per m2 per s, indicating that this was a good method to measure viable biomass. The biomass was 0.3 to 9.6% of the total carbon content of the biotic zone and was about 2 orders of magnitude smaller than the epilithic lichen dry weight at a location some 7 degrees north in latitude. The cryptoendolithic microbiota had a uniform density throughout the biotic zone under the rock surface. The results indicate that the cryptoendolithic microbial biomass is small but viable in this unique, extreme ecosystem.     

Removal of copper ions by the filamentous fungus, Rhizopus oryzae from aqueous solution

Removal of heavy metals present in wastewaters has been a major concern due to their non-biodegradability and toxicity. Removal of copper ion using NaOH treated Rhizopus oryzae biomass was investigated in a batch reactor. The copper uptake exhibited substantial enhancement both in terms of kinetics of uptake as well as the loading capacity. The copper biosorption by viable and pretreated fungal biomass fit well to a Lagergren's pseudo second order reaction in comparison to pseudo first order kinetics. Investigation on effect of pH indicated improved performance in the range of pH 4-6 in alkali treated biomass. Copper uptake exhibited by viable biomass was highest at 21 degrees C, unlike pretreated biomass that showed maximum uptake across the range of temperature 21-55 degrees C. The maximum copper loading capacity of the viable and pretreated biomass according to Langmuir isotherm was 19.4 and 43.7 mg/g, respectively. Distribution coefficient of pretreated biomass showed improvement at lower residual concentration, indicating a change in the nature of binding by the treated biomass. Copper uptake decreased with an increasing dose of biosorbent, although enhancement in the total metal ion removal was observed at higher dose.     

Biosorption of lanthanum and samarium by viable and autoclaved mycelium of Botryosphaeria rhodina MAMB-05

The ascomycetous fungus, Botryosphaeria rhodina MAMB-05, secretes a (1→3)(1→6)-β-D-glucan, and the scaled-up production of this β-glucan results in large amounts of mycelial biomass being produced that represent a potentially cost-effective biosorbent for rare-earth elements. High sorption capacities for both La(III) and Sm(III) were demonstrated for viable and autoclaved lyophilized fungal mycelium. Fourier-transformed infra-red absorption spectra and the point of zero charge (PZC) were similar for the viable and inactive fungal mycelia. The rare-earth lanthanide elements (La and Sm) binding increased at initial pH values greater than 5.0, which was also observed for the PZC determination. The maximum La(III) uptake capacity was observed at lower amounts of La(III) ions in solution, decreasing from 100.0 to 25.3% when the initial lanthanide concentration increased from 15 to 100 mg/L. Lanthanide biosorption by B. rhodina MAMB-05 mycelia followed the Langmuir model, and the affinity of biosorbent functional groups was similar for La(III) and Sm(III).     

基于活细胞量测量的利福霉素发酵过程氮源优化策略

在发酵生产利福霉素SV的过程中,其菌丝体的生长代谢情况及产物发酵合成都与有活力的菌丝量密切相关.介绍了在线活细胞传感仪测定活细胞量的方法,它利用细胞的介电特性,能够排除发酵液中固含物的干扰,测得的电容值与活细胞浓度呈线性相关,可以作为工艺优化过程中的关键参数.通过电容变化反映的前期生长出现的二次生长现象,进行了通过使用迟效氮源豆饼粉代替了原培养基中价格昂贵的速效氮源蛋白胨,成功消除了发酵前期由于氮源利用转换造成的生长停滞期,利用豆饼粉情况下培养前期的OUR和CER达到了14.8和15.3 mmol/L/h,明显高于利用速效氮源蛋白胨A组的8.6和11.3 mmol/L/h,保证了持续较高的比生长速率,对于促进菌体的氧消耗速率的增加和维持有着重要的作用,明显有利于利福霉素的合成与速率的维持,氮源替代组的发酵效价达到了5969±19 U/ml,与对照组(5030±17U/ml)相比显著提升发酵单位18.7%以上.     

Yeast killer activity: A quantitative study

Summary A method, based on the reaction of a sensitive strain being transferred to medium prefermented by a killer strain, is proposed for the quantitative determination of the killer activity in fermentation media by Saccharomyces cerevisiae K1. This technique enables killer activity to be closely followed throughout the duration of batch fermentation. The killer activity in the culture medium is represented by the percentage decrease in viable biomass in comparison with the viable biomass of a reference culture.     

Use of ATP to characterize biomass viability in freely suspended and immobilized cell bioreactors

This work describes investigations into the viability of cells growing on 3,4-dichloroaniline (34DCA). Two bioreactors are employed for microbial growth, a continuous stirred tank (CST) bioreactor with a 2-L working volume, and a three-phase air lift (TPAL) bioreactor with a 3-L working volume. Experiments have been performed at several dilution rates between 0.027 and 0.115 h(-1) in the CST bioreactor and between 0.111 and 0.500 h(-1) in the TPAL bioreactor. The specific ATP concentration was calculated at each dilution rate in the suspended biomass in both bioreactors as well as in the immobilized biomass in the TPAL bioreactor. The ATP was extracted from the cells using boiling tris-EDTA buffer (pH 7.75), and the quantity determined using a firefly (bioluminescence) technique. The cultures were inspected under an electron microscope to monitor compositional changes. Results from the CST bioreactor showed that the biomass-specific ATP concentration increases from 0.44 to 1.86 mg ATP g(-1) dry weight (dw) as dilution rate increases from 0.027 to 0.115 h(-1). At this upper dilution rate the cells were washed out. The specific ATP concentration reached a limiting average value of 1.73 mg ATP g(-1) dw, which is assumed to be the quantity of ATP in 100% viable biomass. In the TPAL bioreactor, the ATP level increased with dilution rate in both the immobilized and suspended biomass. The specific ATP concentration in the immobilized biomass increased from approximately 0.051 mg ATP g(-1) dw at dilution rates between 0.111 and 0.200 h(-1) to approximately 0.119 mg ATP g(-1) dw at dilution rates between 0.300 and 0.500 h(-1). This indicates that the immobilized biomass contained a viable cell fraction of around 5%. Based on these results, kinetic data for freely suspended cells should not be applied to the modeling of immobilized cell systems on the assumption that immobilized biomass is 100% viable. (c) 1993 John Wiley & Sons, Inc.     

Hexavalent chromium removal by viable, granular anaerobic biomass

Hexavalent chromium in industrial wastewater is a major concern due to its extreme toxicity. This study investigates the removal of Cr(VI) using viable anaerobic granular biomass as a biosorbent. The effect of Cr(VI) concentration on biogas content and COD removal using batch studies indicated that the phase II (methanogenic-rich) culture was more sensitive than the phase I (acidogenic-rich) culture. Toxicity indices for both cultures using COD removal were developed based on linear-log interpolation. The median inhibition Cr(VI) concentration (IC(50)), for phase II cultures was found to be 263mg/L, while that for phase I cultures was 309mg/L. A sorption study was conducted on viable and non-viable (dried) phase I-rich biomass: both followed the Langmuir model. In addition, the biosorption capacity for metabolically inhibited biomass was 25% less indicating some level of cellular uptake associated with Cr(VI) removal. This study demonstrated the potential for a two-phase anaerobic treatment system for a Cr(VI)-contaminated effluent.     

Determination of biomass composition of Catharanthus roseus hairy roots for metabolic flux analysis

Metabolic flux analysis is a powerful diagnostic tool in metabolic engineering, and determination of biomass composition is indispensable to accurate flux evaluation. We report the elemental and biomolecular composition of Catharanthus roseus hairy roots, a pharmaceutically significant plant system and an important metabolic engineering target. The molecular formula of the organic material in the hairy roots was C12.0H22.7N0.4O7.6 during mid-exponential growth. The abundances of lipids, lignin, cellulose, hemicellulose, starch, protein, proteinogenic amino acids, mineral ash, and moisture in the biomass were quantified. Analysis of water-soluble components of the biomass with 1-D 13C and 2-D [1H,1H] correlation (COSY) NMR spectroscopy revealed that the water-soluble components were composed almost entirely of -glucans. Agropine, a frequently reported hairy root biomass component, was not detected. Our measurements of the biomass components quantified 83.6 +/- 9.3% (w/w) of the biomass. Together with previously reported abundances of indole alkaloids, we accounted for at least 85.9 +/- 11.6% (w/w) of the carbon in the biomass, which enabled the precise determination of 12 biomass synthesis fluxes.     

植物生物量研究概述(综述)

介绍了生物量的概念、发展历史和现状,将生物量的测定方法分为传统方法和现代方法进行论述,对各种生物量测定方法的利弊做了比较分析,并对生物量测定的发展趋势进行预测。     

Degradation of 2-nitrodiphenylamine, a component of Otto Fuel II, by Clostridium spp

Otto Fuel II, a propellant in torpedoes, is composed of 76% 1,2 propanediol dinitrate (PGDN), 22.5% di-n-butyl sebacate, and 1.5% 2-nitrodiphenylamine (NDPA), and is largely recalcitrant to aerobic microbial degradation. Anaerobic microbial degradation of Otto Fuel II was tested by inoculating anaerobic enrichment media, containing either 2% (vol:vol) complete Otto Fuel II or 2% of a 0.02% solution of Otto Fuel II in methanol, with soil and water from sites contaminated with munitions or with landfill leachate. Anaerobic bacterial growth was completely inhibited by 2% Otto Fuel II. Two mixed bacterial enrichments developed in anaerobic media containing 2% (v/v) of a 0.02% solution of Otto Fuel II in methanol. After incubation, PGDN could not be detected in either enrichment, but was also not detectable in sterile controls, suggesting abiotic degradation of low concentrations of PGDN in reduced anaerobic medium. NDPA did not degrade in either enrichment. Similarly, complete Otto Fuel was recalcitrant to degradation by highly reducing methanogenic biomass collected from an upflow anaerobic sludge blanket bioreactor (UASB). A comparison of the degradative ability of autoclaved and viable biomass showed that low concentrations of PGDN autodegraded, however unlike the autoclaved anaerobic biomass, the viable anaerobic biomass degraded the NDPA component of Otto Fuel II. Two strains of anaerobic clostridia, strains SP3 and SPF, that caused the disappearance of NDPA at its limit of solubility in culture media, were isolated from the UASB bioreactor biomass. SP3 and SPF were shown, by comparison of 16S rDNA sequences, to be most closely related to Clostridium butyricum and Clostridium cochlearium respectively. Although NDPA was lost from cultures of both strains, metabolic end products were not identified. Neither strain could degrade NDPA unless supplied with an alternative energy source. In the culture system used, NDPA stimulated the growth of SP3 but it had no appreciable effect on the growth of SPF. Both SP3 and SPF degraded low concentrations of trinitrotoluene (TNT), without the production of detectable concentrations of aromatic amines. A possible method for the remediation of small spills of Otto Fuel II is suggested.     

Enzymatic method to determine biomass in skim milk whey permeate medium

Summary In this study, a new technique for biomass determination was developed. Proteases were used to separate cells from the culture broth in skim milk whey permeate medium and the solubilization of casein was achieved 99% by elastase, 95% by pepsin and 90% by trypsin. Elastase was found to be efficient and reproducible for determining biomass in skim milk whey permeate medium.     

东北林区4个天然针叶树种单木生物量模型误差结构及可加性模型

基于276株实测生物量数据,构建了东北林区红松、臭冷杉、红皮云杉和兴安落叶松4个天然针叶树种总量及各分项生物量一元、二元可加性生物量模型.采用似然分析法判断总量及各分项生物量异速生长模型的误差结构(可加型或相乘型),而模型参数估计采用非线性似乎不相关回归模型方法.结果表明: 经似然分析法判断,4个天然树种总量及各分项生物量异速生长模型的误差结构都是相乘型的,对数转换的可加性生物量可以被选用.各树种可加性生物量模型的调整后确定系数R_a²为0.85～0.99,平均相对误差为-7.7%～5.5%,平均相对误差绝对值<30.5%.增加树高可以显著提高各树种可加性生物量模型的拟合效果和预测能力,而且总量、地上和树干生物量模型效果较好,树根、树枝、树叶和树冠生物量模型效果较差.所建立的可加性生物量模型的预测精度为77.0%～99.7%(平均92.3%),可以很好地预估东北林区天然红松、臭冷杉、红皮云杉和兴安落叶松的生物量.
     

Use of fluorescent probes for determination of yeast cell viability by gravitational field-flow fractionation

The quality of wine greatly depends on the features of the yeast used in its production, and yeast cell viability is one of the most important quality control issues to consider in this regard. In the first steps of winemaking, the use of a low-cost and simple methodology for monitoring the cell viability of yeast inoculates is of paramount importance. Gravitational field-flow fractionation is a useful technique for the determination of cell viability because it provides gentle experimental conditions, although the proper use of fluorophore probes as biomass indicators is required. In this paper the use of different fluorescent probes such as carboxyfluorescein diacetate (cFDA), calcein-AM, and SYTO-13 were considered as viability biomarkers. Calceina-AM allowed the establishment of a direct GrFFF method to determine cell viability, with a limit of detection of 5.0 x 10(4) viable cell/mL. SYTO-13 could be used as biomass indicator with a limit of detection of 3.5 x 10(4) total cells/mL. The suitability of the procedure was tested with three commercial yeast samples, and the results were compared with those obtained using standard techniques.