Genomics by the beach

A report on the 35th Annual Lorne Genome Conference 2014 held in Lorne, Victoria, Australia, February 16–18, 2014.     

Piscine predation on juvenile fishes on a Scottish sandy beach

Predation by larger fishes is a major cause of mortality for the populations of juvenile fishes on a sandy beach on the west coast of Scotland. Predation was concentrated on the most numerous species (0-group Pleuronectes platessa ) in June but with the decline in numbers and growth in size of this species, the fish predators had changed their diet in August to feed principally on small sandeels (Ammodytidae). Six major predatory species had taken 95 per cent of all fish found in predators' stomachs and could be roughly divided into three categories according to their piscivorous tendencies and their abundance. (1) Common species in which fishes formed the main item of their diet ( Gadus morhua ). (2) Species in which fishes formed only a relatively minor constituent of the diet but which, by virtue of their abundance, potentially had a significant predatory impact (I-group P. platessa ). (3) less abundant species whose diet consisted principally of fishes. The intensity of predation was generally greatest at night for G. morhua but during the day for I-group P. platessa. The distributions and movements of the dominant prey species can be interpreted in the light of their predator-prey relationships. The most common benthic species, 0-group P. platessa , move off -and onshore with the ebb and flow of the tides and concentrate in shallow water at night. Such movements would have the effect of maintaining the majority of the population in depths where predation pressure from nocturnally onshore-migrating gadoids and other predators is likely to be minimized.     

Simple estimate of filtration rates on a sandy beach

A new, simple and inexpensive method is proposed to determine the rate of water filtration in the swash zone of lakeshore beaches. Rates of water filtration on a sandy beach were determined by measuring the residue of a tracer injected into several cylinders buried vertically in the sandy layer at various locations from the shoreline to the tip of the swash zone. This methodology enabled the separate estimation of mean infiltration and exfiltration rates. The results obtained for seashore beaches were in accordance with previous data obtained by more conventional methods. The filtration rate results for lakeshore sandy beaches were almost equivalent to seashore sandy beaches, despite a shorter swash length. This paper indicates that this is caused by a larger grain size and shorter wave period. This method presents an easy approach to determine rates of water filtration in sandy beaches and is expected to further promote studies in this field.     

放牧对滩涂底栖动物的影响

于2005年5月（春季）和10月（秋季）,调查了放牧对上海市崇明东滩大型底栖动物的影响.调查采样设置3个样区,其中Ⅰ、Ⅱ样区在放牧区,Ⅲ样区在非放牧区,3个样区均在潮间带的中潮带,共计90个样方.采集到底栖动物13种,其中节肢动物7种,软体动物4种,环节动物2种.Ⅰ、Ⅱ和Ⅲ样区春季分别有6、8和10种,秋季6、8和12种.各样区秋季底栖动物的平均密度均高于春季,春、秋季各样区的平均密度又均以Ⅲ样区最高.生物量与密度变化大体相似,以Ⅲ样区最高.与Ⅰ、Ⅱ样区相比,Ⅲ样区的多样性指数、均匀度和丰富度均最高,说明放牧改变了底栖动物种类分布的格局,使底栖动物的密度、生物量均有不同程度的改变,且放牧对崇明东滩底栖动物的生物多样性产生了一定的负面影响.     

Identification of Microsatellite Repeats in Turbot (Scophthalmus maximus) and Dover Sole (Solea solea) using a RAPD-Based Technique: Characterization of Microsatellite Markers in Dover Sole

We have used a RAPD-based technique to identify several microsatellite repeats in turbot (Scophthalmus maximus) and Dover sole (Solea solea) and report the characterization of six novel polymorphic microsatellite markers for Dover sole. These are the first such markers to be developed for this flatfish species. They exhibit much higher levels of heterozygosity than those previously observed with allozyme loci and should prove useful in addressing population genetic questions as well as more fundamental aquaculture-related questions. Received ; accepted July 13, 1999.