How Currents on Different Sides of Substrates in Streams Affect Mechanisms of Benthic Algal Accumulation

Benthic diatom accumulation rates and diversity were monitored for 32 days in five habitats where current conditions were different. After 32 days, diatom abundance in a sheltered habitat where eddies occurred over substrates was over eight times the abundance in a habitat that was exposed directly to the main flow of the stream (about 30 cm/sec). Diatom immigration rates and species richness of diatom taxocenes were negatively related to exposure; whereas, diatom reproduction rates, death rates and relative abundances of the eight dominant diatom species were not related to the small differences in current velocity that occurred. During the 32-day colonization period diatom immigration rates increased, species richness of diatom taxocenes increased and evenness of species abundances decreased. Species composition of diatom taxocenes shifted from a numerical dominance by fast immigrators to dominance by fast reproducers during the 32-day colonization.     

Mock communities highlight the diversity of host‐associated eukaryotes

Host‐associated microbes are ubiquitous. Every multicellular eukaryote, and even many unicellular eukaryotes (protists), hosts a diverse community of microbes. High‐throughput sequencing (HTS) tools have illuminated the vast diversity of host‐associated microbes and shown that they have widespread influence on host biology, ecology and evolution (McFall‐Ngai et al. 2013 ). Bacteria receive most of the attention, but protists are also important components of microbial communities associated with humans (Parfrey et al. 2011 ) and other hosts. As HTS tools are increasingly used to study eukaryotes, the presence of numerous and diverse host‐associated eukaryotes is emerging as a common theme across ecosystems. Indeed, HTS studies demonstrate that host‐associated lineages account for between 2 and 12% of overall eukaryotic sequences detected in soil, marine and freshwater data sets, with much higher relative abundances observed in some samples (Ramirez et al. 2014 ; Simon et al. 2015 ; de Vargas et al. 2015 ). Previous studies in soil detected large numbers of predominantly parasitic lineages such as Apicomplexa, but did not delve into their origin [e.g. (Ramirez et al. 2014 )]. In this issue of Molecular Ecology, Geisen et al. ( 2015 ) use mock communities to show that many of the eukaryotic organisms detected by environmental sequencing in soils are potentially associated with animal hosts rather than free‐living. By isolating the host‐associated fraction of soil microbial communities, Geisen and colleagues help explain the surprisingly high diversity of parasitic eukaryotic lineages often detected in soil/terrestrial studies using high‐throughput sequencing (HTS) and reinforce the ubiquity of these host‐associated microbes. It is clear that we can no longer assume that organisms detected in bulk environmental sequencing are free‐living, but instead need to design studies that specifically enumerate the diversity and function of host‐associated eukaryotes. Doing so will allow the field to determine the role host‐associated eukaryotes play in soils and other environments and to evaluate hypotheses on assembly of host‐associated communities, disease ecology and more.     

土壤含水量驱动土壤病毒和细菌多度及其与土壤异养呼吸关系的变化

土壤微生物是维持陆地生态系统稳定性和功能的重要组成部分。病毒是地球上数量最多的生物实体,也是若干类型生境中微生物数量的重要调节者。因此,了解病毒与微生物的相互作用,对深入认识包括碳循环在内的生态系统过程具有重要意义。在实验室建立土壤微宇宙实验系统,跟踪调查恒定低含水量、恒定高含水量和波动含水量3种水分处理下土壤病毒和细菌多度的变化,以及土壤异养呼吸速率对土壤病毒-细菌相互作用的响应。相较于低水分处理,高水分处理显著增加了病毒多度（P<0.001）和病毒-细菌多度比（P=0.0026）,波动水分处理显著增加了病毒多度（P<0.001）。在高水分处理的土壤微宇宙中,细菌和病毒多度呈现出随时间动荡的信号,即细菌多度表现出增加-降低-增加的趋势,而病毒多度则表现出增加-降低的趋势,且其变化滞后于细菌。土壤异养呼吸速率与土壤含水量（P<0.001）、细菌多度（P=0.0045）和病毒多度（P<0.001）都具有显著的正相关关系。这些结果说明：病毒导致的下行控制可能是细菌多度的重要影响因子,在水分增加情形下,病毒有可能通过加速细菌的更新速率进而加速土壤呼吸。因此,病毒与细菌的相互作用可能是碳循环的重要决定因素。     

不同放牧强度下土壤氨氧化和反硝化微生物的变化特征

土壤硝化及反硝化功能微生物在氮素可利用性、硝酸盐淋溶和氧化亚氮温室气体排放等方面起着关键作用,在指示不同放牧强度对生态系统的影响及预测草地生态系统退化状况等方面具有重要意义。以内蒙古干旱半干旱草原不同放牧强度(轻度、中度和重度)的长期试验样地为对象,应用定量PCR和限制性末端片段长度多态性(Terminal restriction fragment length polymorphism,T-RFLP)的方法,研究土壤氨氧化古菌(ammonia-oxidizing archaea,AOA)、氨氧化细菌(ammonia-oxidizing bacteria,AOB)和反硝化细菌的丰度、群落结构和多样性对不同放牧强度的响应。结果表明,土壤p H和铵态氮含量分别在7.90—8.18和6.37—35.92 mg/kg之间,中度放牧处理显著增高了土壤pH(P=0.03),而铵态氮含量在重度放牧处理中最高(P=0.02)。不同放牧强度下土壤异养呼吸相比未放牧处理均显著降低(P=0.02)。土壤AOA-amoA和AOB-amoA基因丰度范围分别为每克干土(4.94—7.60)×10~9个拷贝数和(0.68—3.75)×10~6个拷贝数,放牧处理对AOA-amoA基因丰度无显著影响,中度放牧处理显著降低了AOB-amoA基因丰度(P=0.04);反硝化微生物nosZ基因丰度随在轻度放牧处理中最低(P=0.03)。土壤铵态氮含量是影响AOA-amoA和AOB-amoA基因丰度的主要因子,而nosZ基因丰度主要受反硝化底物含量及土壤通气状况的影响。冗余分析表明由放牧所引起的可利用性氮含量的变化是导致氨氧化和反硝化微生物群落结构显著变化的主要因素。     

Does weather affect biting fly abundance in avian nests?

Environmental factors may strongly affect avian‐biting fly interactions in different ways because insects are heterothermic organisms that depend greatly on environmental variables to activate their metabolism and behaviour. We studied the effects of weather on both blackfly (Simuliidae) and biting midge Culicoides (Ceratopogonidae) abundance in nests of three passerine species: blue tits Cyanistes caeruleus, great tits Parus major and pied flycatchers Ficedula hypoleuca, breeding in the same area. We controlled for different host‐related factors (hatching date, brood size and host species). Blackfly abundance was negatively related to minimum temperature. In addition, blackfly and biting midge abundances were negatively affected by wind speed measured at 07.00 h, but blackfly abundance was positively associated to wind speed at 18.00 h. We found higher blackfly and biting midge abundances in nests with larger broods breeding later in the season, and significantly higher biting midge abundance in pied flycatcher nests as compared to tit nests. These results represent, to our knowledge, the first report of both environmental and host‐related effects on haematophagous fly abundance in the nests of wild hole‐nesting birds.     

Taxonomic level, trophic biology and the regulation of local abundance

• 1 Taxocenes — monophyletic ecological assemblages — are a key focus of macroecology. Abundance (individuals per area) is a basic property of taxocenes but has received less attention than diversity, although the two are probably related. Abundance reflects a taxocene’s ability to harvest and sequester available energy and divide it among individuals. This paper explores how two properties of all taxocenes — trophic makeup and taxonomic level (e.g. genus, tribe, subfamily, family … ) — may contribute to patterns of local abundance at geographical scales.
• 2 Forty‐nine ground ant taxocenes, in habitats ranging from New World deserts to rain forests, were surveyed along a three‐orders of magnitude productivity gradient using transects of 30 1‐m² quadrats at each site. Abundance — the number of nests per transect — varied over two orders of magnitude.
• 3 Over 80% of the genera collected were omnivores. However, herbivore, omnivore, and predator taxa were added to ant taxocenes in roughly 1 order of magnitude steps up the productivity gradient. Specialist detritivores were added last.
• 4 Net primary productivity and mean monthly temperature both consistently entered regression models predicting abundance. However, while productivity was the dominant predictor of abundance for higher taxa (families, subfamilies), temperature was the dominant predictor of abundance for lower taxa (tribes, genera). The answer to the question ‘What regulates the abundance of a taxocene?’ is thus sensitive to the taxonomic level of analysis.
• 5 These data support the following scenario. Lower taxa are abiotic specialists given the insufficient number of genomes and generations required for the exploration of the entire abiotic envelope. Higher taxa, in contrast, consist of suites of abiotic specialists arrayed along the entire productivity gradient, with access to productivity everywhere the taxon occurs. If this scenario is true, individual species may respond to global changes in temperature; the higher taxa they belong to may most respond to global changes in productivity.

     

Why is liana abundance low in semiarid climates?

Lianas are abundant in seasonal tropical forests, where they avoid seasonal water stress presumably by accessing deep‐soil water reserves. Although lianas are favoured in seasonal environments, their occurrence and abundance are low in semiarid environments. We hypothesized that lianas do not tolerate the great water shortage in the soil and air characteristic of semiarid environments, which would increase the risk of embolism. We compared the rooting depth of coarse roots, leaf dynamics, leaf water potential (ψ_leaf), embolism resistance (P₅₀) and lethal levels of embolism (P₈₈) between congeneric lianas that occur with different abundances in two semiarid sites differing in soil characteristics and vapour pressure deficit in the air (VPD_air). Regardless of soil texture and depth, water availability was restricted to the rainy season. All liana species were drought deciduous and had superficial coarse roots (not deeper than 35 cm). P₅₀ varied from ?1.8 to ?2.49 MPa, and all species operated under narrow safety margins against catastrophic (P₅₀) and irreversible hydraulic failure (P₈₈), even during the rainy season. In short, lianas that occur in semiarid environments have lower resistance to cavitation and limit carbon fixation to the rainy season because of leaf fall in the early dry season. We suggest that leaf shedding and shallow roots impairing carbon gain and growth in the dry season may explain why liana abundance is lower in semiarid than in other seasonally dry environments.     

Seasonal abundance of anopheline mosquitoes and their association with rainfall and malaria along the Matapí River,Amapí, Brazil

Three communities separated by 1.5–7.0 km, along the Matapí River, Amapá State, Brazil, were sampled monthly from April 2003 to November 2005 to determine relationships between seasonal abundance of host‐seeking anophelines, rainfall and malaria cases. Out of the 759 821 adult female anophelines collected, Anopheles darlingi Root (Diptera: Culicidae) was the most abundant (56.2%) followed by An. marajoara Galvão & Damasceno (24.6%), An. nuneztovari Gabaldón (12.4%), An. intermedius (Chagas) (4.4%) and An. triannulatus (Neiva and Pinto) (2.3%). Vector abundance, as measured by human landing catches, fluctuated during the course of the study and varied in species‐specific ways with seasonal patterns of rainfall. Anopheles darlingi and An. triannulatus were more abundant during the wet‐dry transition period in June to August, whereas An. marajoara began to increase in abundance in February in two villages, and during the wet‐dry transition in the other village. Anopheles nuneztovari and An. intermedius increased in abundance shortly after the rains began in January to February. A generalized linear mixed model (GLMM) analysis of 32 consecutive months of collections showed significant differences in abundance for each species by village and date (P < 0.0001). Correlations between lagged rainfall and abundances also differed among species. A strong positive correlation of An. darlingi abundance with rainfall lagged by 4 and 5 months (Pearson's r = 0.472–0.676) was consistent among villages and suggests that rainfall may predict vector abundance. Significant correlations were detected between numbers of malaria cases and abundances of suspected vector species. The present study shows how long‐term field research may connect entomological and climatological correlates with malaria incidence.     

天然高寒草地转变为燕麦人工草地对土壤线虫群落的影响

为查明高寒草地上种植燕麦(Avena sativa)对土壤线虫群落的影响,于2014年7、9月用土钻法和湿漏斗法(Baermann法)对西南民族大学青藏高原畜牧业高科技研发示范基地内燕麦地(Oat grassland,OG)和天然草地(Natural grassland,NG)的土壤线虫群落进行调查。共分离土壤线虫10179条,隶属于2纲8目50科143属,平均密度477条/100g干土。燕麦地与天然草地土壤线虫群落结构具有明显差异,影响群落结构的主要类群为拟丽突属(Acrobeloides)、原杆属(Protorhabditis)、丝尾垫刃属(Filenchus)和盘旋属(Rotylenchus),但不同月份间存在差异。燕麦地的土壤线虫群落密度、食细菌线虫密度、食真菌线虫密度和自由生活线虫成熟度指数(MI)均显著高于天然草地(P0.01;P0.05;P0.001;P0.01),植物寄生线虫成熟度指数(PPI)则显著低于天然草地(P0.05)。两种草地7月份的土壤线虫群落类群数和香农多样性指数(H′)均显著低于9月(P0.05),仅燕麦地7月份的食细菌、食真菌线虫密度和Simpson优势度指数(C)显著高于9月(P0.05;P0.001;P0.01)。典范对应分析(Canonical correspondence analysis,CCA)及回归分析结果表明,土壤pH、有机质、全氮、速效磷和含水量是影响线虫群落的主要环境因子。研究结果表明,高寒草地种植燕麦后在短期内改变了线虫群落结构,增加了线虫群落密度以及食细菌和食真菌线虫在群落中的比例,以植物寄生线虫为主的群落营养结构转变为以食细菌线虫为主,同时也增加了线虫群落不同月份间的差异。     

Conserved abundance and topological features in chromatin‐remodeling protein interaction networks

The study of conserved protein interaction networks seeks to better understand the evolution and regulation of protein interactions. Here, we present a quantitative proteomic analysis of 18 orthologous baits from three distinct chromatin‐remodeling complexes in Saccharomyces cerevisiae and Homo sapiens. We demonstrate that abundance levels of orthologous proteins correlate strongly between the two organisms and both networks have highly similar topologies. We therefore used the protein abundances in one species to cross‐predict missing protein abundance levels in the other species. Lastly, we identified a novel conserved low‐abundance subnetwork further demonstrating the value of quantitative analysis of networks.     

锡林河流域不同植被带土壤绿菌门微生物群落的空间分布特征

[目的] 为了探究锡林河流域中游不同植被带土壤绿菌门（Chlorobi）成员的空间分布特征及驱动因子。[方法] 本文选择典型河滨带环境为研究对象,沿河流中心至河流阶地（陆向）方向,在无植被带（BC）、水莎草沼泽（BS）、灯芯草沼泽化草甸（LF）、鹅绒委陵菜草甸（HF）、河流阶地羊草草原（LT）、丘陵坡地大针茅典型草原（HT）中分别采集0-10 cm土壤样品。基于16S rRNA基因高通量测序分析土壤绿菌门微生物群落的组成、丰度及空间分布特征;结合土壤理化因子分析绿菌门微生物群落空间异质性的驱动因子。[结果] 在属水平上共检测到来自绿菌目（Chlorobiales）和Ignavibacteriales目的9个类群。Chlorobiales1、2、6及Ignavibacteriales7、9类群的最高相对丰度低于0.40%;Ignavibacteriales3、4、5、8类群的最高相对丰度介于0.54%-1.06%。Chlorobiales1、2类群在HF、LT和HT的相对丰度显著高于BS（P<0.05）,Chlorobiales1类群的相对丰度与pH和总有机碳含量呈极显著正相关（P<0.01）;Chlorobiales2类群的相对丰度与粉黏粒含量呈极显著正相关（P<0.01）;Ignavibacteriales3、5、7、9和Ignavibacterium4类群在LF的相对丰度显著高于BC（P<0.05）,与含水量呈极显著正相关（P<0.01）;Chlorobiales6和Ignavibacteriales8类群在BS的相对丰度显著高于其他植被带（P<0.05）,与氨态氮含量呈极显著正相关（P<0.01）。变异权重分析表明,土壤含水量解释了绿菌门微生物群落空间变异的65.7%。[结论] 锡林河流域不同植被带土壤绿菌门微生物群落存在明显的空间异质性;土壤含水量是不同植被带绿菌门微生物群落空间异质性的主要驱动因子。     

Bacterial traits, organism mass, and numerical abundance in the detrital soil food web of Dutch agricultural grasslands

This paper compares responses to environmental stress of the ecophysiological traits of organisms in the detrital soil food webs of grasslands in the Netherlands, using the relationship between average body mass M and numerical abundance N. The microbial biomass and biodiversity of belowground fauna were measured in 110 grasslands on sand, 85 of them farmed under organic, conventional and intensive management. Bacterial cell volume and abundance and electrophoretic DNA bands as well as bacterial activity in the form of either metabolic quotient (qCO₂) or microbial quotient (C_mic/C_org) predicted the response of microorganisms to stress. For soil fauna, the logarithm of body mass log(M) was approximately linearly related to the logarithm of numerical abundance log(N) with slope near ?1, and the regression slope and the proportion of predatory species were lower in intensive agroecosystems (more reduced substrates with higher energy content). Linear regression of log(N) on log(M) had slope not far from ?3/4. The approach to monitoring data illustrated in this paper could be useful in assessing land‐use quality.     

Plant diversity and identity effects on predatory nematodes and their prey

There is considerable evidence that both plant diversity and plant identity can influence the level of predation and predator abundance aboveground. However, how the level of predation in the soil and the abundance of predatory soil fauna are related to plant diversity and identity remains largely unknown. In a biodiversity field experiment, we examined the effects of plant diversity and identity on the infectivity of entomopathogenic nematodes (EPNs, Heterorhabditis and Steinernema spp.), which prey on soil arthropods, and abundance of carnivorous non‐EPNs, which are predators of other nematode groups. To obtain a comprehensive view of the potential prey/food availability, we also quantified the abundance of soil insects and nonpredatory nematodes and the root biomass in the experimental plots. We used structural equation modeling (SEM) to investigate possible pathways by which plant diversity and identity may affect EPN infectivity and the abundance of carnivorous non‐EPNs. Heterorhabditis spp. infectivity and the abundance of carnivorous non‐EPNs were not directly related to plant diversity or the proportion of legumes, grasses and forbs in the plant community. However, Steinernema spp. infectivity was higher in monocultures of Festuca rubra and Trifolium pratense than in monocultures of the other six plant species. SEM revealed that legumes positively affected Steinernema infectivity, whereas plant diversity indirectly affected the infectivity of Heterorhabditis EPNs via effects on the abundance of soil insects. The abundance of prey (soil insects and root‐feeding, bacterivorous, and fungivorous nematodes) increased with higher plant diversity. The abundance of prey nematodes was also positively affected by legumes. These plant community effects could not be explained by changes in root biomass. Our results show that plant diversity and identity effects on belowground biota (particularly soil nematode community) can differ between organisms that belong to the same feeding guild and that generalizations about plant diversity effects on soil organisms should be made with great caution.     

Porcupine disturbances and vegetation pattern along a resource gradient in a desert

Summary In the Negev Desert, Israel, the Indian crested porcupine, Hystrix indica, digs similar sized, discrete, elongated pits (257±21.3 cm³; n=144) while foraging for below-ground plant storage organs. In these digs, soil moisture content is higher than in the surrounding soil matrix. The digs disturb population and community structure due to porcupine consumption or damage of 18 species of plants, and repopulation by 55 plant species. Over the past 14 years we have studied dig dynamics on a rocky hillslope with three distinct habitats as regards soil moisture content. Midslope soil moisture is the highest, decreasing towards upper and lower slope. We have counted a total of 6,609 digs in the area: 2141 on the upper, 3211 in the middle and 1257 on the lower part of the slope. The number of digs at midslope is significantly higher than on the other parts of the slope (ANOVA; P<0.0001). There is a significant (P<0.05) correlation between the mean number of porcupine digs and the cumulative rainfall amount for the 2 years prior to dig formation. To study plant repopulation in digs, all plants in 144 digs along the slope and from equal sized plots in the undistarbed soil matrix were collected. In all, 288 samples with 20 584 plants were collected, 2042 from the matrix and 18,542 from digs. Of the 55 species, we focused on the abundance patterns of Filago desertorum, Picris cyanocarpa and Bromus rubens, which made up 69.5% of all the individuals in the digs and 68.3% in the matrix. Our results showed that all three species increased in abundance in the digs as compared to the matrix. F. desertorum density increased by a factor of 2.9, P. cyanocarpa by 9.5 and B. rubens by 12.0. There were species-specific responses in abundance to the location of the digs along the moisture gradient. The only species whose abundance responded to the moisture gradient was F. desertorum. P. cyanocarpa demonstrated peak abundance in the location with the poorest moisture regime, while B. rubens showed peak abundance at the intermediate part of the moisture gradient. We suggest a scheme for integrating the increase in density and the species-specific responses to the digs along a water gradient based on R.H. Whittaker's view of individual species abundances along an environmental gradient.     

Trophic cascades in bell miner‐associated dieback forests: Quantifying relationships between leaf quality,psyllids and Psyllaephagus parasitoids

Coteries of the meliphagid bird Manorina melanophrys are associated with a form of eucalypt defoliation and recovery called bell miner‐associated dieback (BMAD). Through their defence of cooperative colony boundaries against other insectivorous birds, bell miners may foster greater abundances of lerp‐forming psyllids (Hemiptera: Aphalaridae), some of which reduce the lifespan of leaves. Trophic cascades in BMAD forests need to be understood to have a complete picture of regulatory processes. We studied relationships between leaf quality, psyllid and Psyllaephagus parasitoid/hyperparasitoid abundances within the Gondwana Rainforest World Heritage Area, NSW, Australia; our focal tree species were Eucalyptus propinqua and E. biturbinata. Eucalyptus biturbinata had tougher leaves than E. propinqua; leaf toughness of both species varied with site and tree. We found a statistically significant, negative relationship between toughness (surrogate for leaf age) and foliar nitrogen content; younger leaves had higher nitrogen contents. Both bell miner abundance and foliar nitrogen were positively correlated with psyllid abundance. The abundance of Glycaspis species (the psyllid that produces lerps with the highest sugar content) was more closely correlated with foliar nitrogen content than was the abundance of all five psyllid genera combined. We identified 14 Psyllaephagus spp./morphospecies, comprising 11 primary parasitoids and three hyperparasitoids. The abundance of all Psyllaephagus combined was positively correlated with the abundance of lerps. However, psyllid parasitism was not correlated with the abundance of lerps. The abundance of the three hyperparasitoids was positively correlated with the abundance of Psyllaephagus hosts. The availability of epicormic foliage (young, morphologically juvenile leaves produced following defoliation) is likely to alter the nutritional ecology underpinning the diversity and abundance of psyllid populations. Higher quality epicormic foliage should favour populations of Glycaspis species (by enhancing nymphal survival) creating lerp hotspots that induce residency by opportunistic bell miners. The positive contribution of induced amelioration, interacting with feedbacks from parasitoids and hyperparasitoids, to BMAD requires longitudinal investigation.     

Time‐series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’ microarray

To investigate the temporal, spatial and phylogenetic resolution of marine microbial community structure and variability, we designed and expanded a genome proxy array (an oligonucleotide microarray targeting marine microbial genome fragments and genomes), evaluated it against metagenomic sequencing, and applied it to time‐series samples from the Monterey Bay. The expanded array targeted 268 microbial genotypes across much of the known diversity of cultured and uncultured marine microbes. The target abundances measured by the array were highly correlated to pyrosequence‐based abundances (linear regression R² = 0.85–0.91, P < 0.0001). Fifty‐seven samples from ～4 years in Monterey Bay were examined with the array, spanning the photic zone (0 m), the base of the surface mixed layer (30 m) and the subphotic zone (200 m). A significant portion of the expanded genome proxy array's targets showed signal (95 out of 268 targets present in ≥ 1 sample). The multi‐year community survey showed the consistent presence of a core group of common and abundant targeted taxa at each depth in Monterey Bay, higher variability among shallow than deep samples, and episodic occurrences of more transient marine genotypes. The abundance of the most dominant genotypes peaked after strong episodic upwelling events. The genome‐proxy array's ability to track populations of closely related genotypes indicated population shifts within several abundant target taxa, with specific populations in some cases clustering by depth or oceanographic season. Although 51 cultivated organisms were targeted (representing 19% of the array) the majority of targets detected and of total target signal (85% and ～92% respectively) were from uncultivated genotypes, often those derived from Monterey Bay. The array provided a relatively cost‐effective approach (～$15 per array) for surveying the natural history of uncultivated lineages.     

Seagull influence on soil properties, chenopod shrub distribution, and leaf nutrient status in semi-arid Mediterranean islands

Concentration of seagulls in the Chafarinas Islands (three semi‐arid North African islets) induces profound changes in soil properties including eutrophication, salinization, acidification and nutrient imbalances. Soils of heavily seabird‐affected sites have significantly higher soluble K and NO₃ levels (>20‐fold), Zn and Fe availability (>5‐fold), water‐retention capacity (>40% increase) and ¹⁵N enrichment, compared with control sites. These seabird‐induced soil changes are paralleled by (i) different patterns of abundance of the two main chenopod shrubs: Suaeda vera abundance is higher (>30‐fold) in seabird‐affected sites while Salsola oppositifolia largely dominates in low‐affected areas. No differences were found for Atriplex halimus. The abundance of the first two species may be largely explained by changes in soil soluble K‐to‐available Ca ratio whose value depends of the interaction between seabird products and soil constituents; (ii) significant increases in leaf N, P and Zn levels, and in all K ratios, paralelled by a decrease in Ca, in Salsola; but only by increased K/Na and P/Ca ratios in Suaeda leaves. These changes were significantly correlated to changes in species abundances; (iii) an increase of δ¹⁵N, paralleled by a decrease in δ¹³C values, in Salsola leaves but not in Suaeda.
Conjoint analysis of the seabird‐related changes in soil properties, species abundance, leaf composition and differential response to the seabird‐induced fertilization/severity gradient of the two main chenopod shrub species, has led us to propose an explanatory hypothesis of seagull‐soil‐shrub relationships. According to this, the seagull‐induced soil changes, mediated by processes of (in)tolerance‐facilitation, play a main role in determining the abundance and the leaf nutrient status of the studied chenopod shrubs, which have contrasting physiological adaptations.     

Phenological shifts of three interacting zooplankton groups in relation to climate change

Over the past several decades, global warming has been linked to shifts in the distributions and abundances of species. In the southern North Sea, temperatures have increased in the last three decades and this will likely have consequences on the seasonality of marine organisms living in the area. Ctenophores such as Beroe gracilis and Pleurobrachia pileus could be particularly affected by changes in their own phenology and that of their prey, thus causing shifts in ecosystem function. Despite their global relevance and their potentially deleterious effect on the fishing industry, only a few long‐term records of ctenophore abundance exist, and most of these records are semiquantitative in nature. Therefore, our knowledge of the influence of environmental factors on their population development is presently very limited. In this study, the long‐term abundance dynamics of B. gracilis, P. pileus and their food calanoid copepods were analysed for a highly temporally resolved time series in the German Bight at Helgoland Roads. Special attention was focused on the response of these organisms to climate warming. Bayesian statistics showed that the phenology of the two ctenophores shifted in a step‐like mode in the year 1987/1988 to permanent earlier appearances. The seasonal change in the population blooms of P. pileus and B. gracilis correlated remarkably well with a step‐like increase in winter and spring sea surface temperatures of the southern North Sea. Possible explanations for the changes observed in these organisms include higher reproductive rates, increased winter survival rates or both. Interannual variations in ctenophore abundances correlated best with the interannual changes in spring temperatures, although the impact of temperature on B. gracilis appeared less pronounced. The changes in copepods abundance were not consistent with changes in P. pileus and B. gracilis. P. pileus showed longer periods of high abundance after the permanent seasonal advancement. These longer periods were correlated with a decline in the average autumn abundance of copepods. Changes in the phenology of these organisms raise the concerns on the declining state of fish stocks, which could potentially be exacerbated by gelatinous zooplankton outbreaks. These conditions may ultimately lead to trophic dead ends by channelling the flow of energy away from higher trophic levels.     

Taxonomic sufficiency as a useful tool for typology in a poikilohaline estuary

Taxonomic sufficiency has been used mainly to assess benthic condition, based on the assumption that taxa can be identified to a taxonomic level higher than the species level without losing the ability to detect changes related to pollution stress. Identifying taxa to a higher level reduces the expertise and time needed to identify organisms and consequently allows increased spatial and temporal replication. The usefulness of taxonomic sufficiency for typology (identification of water body types) was examined using the benthic communities of the Mondego River estuary (Portugal). Benthic samples were collected seasonally along the Northern branch of the Mondego River estuary from July 2000 to June 2001 and several environmental parameters were measured simultaneously. Cluster analysis of species data indicated three major ecological groups, mainly related to a saline gradient along the estuary. The same groups were found when taxa were aggregated to higher taxonomic levels (genus, family, order, class), except for the phylum level. The overall spatial pattern was driven by: (1) the dominance of bivalves and the occurrence of rare marine species in the Lower Estuary; (2) the dominance of polychaetes in the Middle Estuary; (3) and the dominance of arthropods in the Upper Estuary. The ability of different taxocenes to discriminate the three ecological groups was also examined. Mollusca and Bivalvia were the only taxocenes producing the same groupings, although other taxocenes (Annelida, Polychaeta, Spionidae, Arthropoda) showed a significant ability to discriminate between all three groups. Compared to using all taxa identified to the lowest possible taxonomic level, our results indicate that for typology (1) several higher taxonomic levels were sufficient (2) while few taxocenes alone were sufficient. Electronic supplementary material  The online version of this article (doi: ) contains supplementary material, which is available to authorized users.