Complete Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp. mobilis Centrotype ATCC 29191

Zymomonas mobilis is an ethanologenic bacterium that has been studied for use in biofuel production. Of the sequenced Zymomonas strains, ATCC 29191 has been described as the phenotypic centrotype of Zymomonas mobilis subsp. mobilis, the taxon that harbors the highest ethanol-producing Z. mobilis strains. ATCC 29191 was isolated in Kinshasa, Congo, from palm wine fermentations. This strain is reported to be a robust levan producer, while in recent years it has been employed in studies addressing Z. mobilis respiration. Here we announce the finishing and annotation of the ATCC 29191 genome, which comprises one chromosome and three plasmids.     

Interrelationships between Growth Yield,ATPase and Adenylate Kinase Activities in Zymomonas mobilis

The presence of cytoplasmic and membrane‐bound adenylate kinase (EC 2.7.4.3) as well as inorganic pyrophosphatase (EC 3.6.1.1) was detected in Zymomonas mobilis ATCC 29191. An increase in the molar growth yield (Y_X/S) of Z. mobilis under aerobic growth conditions appeared to be in proportion to a reduction of membrane‐bound adenylate kinase (mAK) and ATPase activities and to an increase in cytoplasmic adenylate kinase (AK) activity. Significant (1 — P < 0.01) multiple regressions were observed between the values of Y_X/S (dependent variable), ATPase and AK or AK and mAK as independent variables, suggesting that a combined operation of these phosphohydrolases and phosphotransferases would be responsible for the biomass yield in Z. mobilis.     

Adaptation of Candida shehatae and Pichia stipitis to wood hydrolysates for increased ethanol production

Summary Candida shehatae ATCC 22984 and Pichia stipitis CBS 5776 were tested for ethanol production from xylose, glucose-xylose mixtures, and aspen wood total hydrolysates. Adaptation of these yeasts to wood hydrolysate solutions by recycling resulted in improved substrate utilization and ethanol production. Compared to the non-adapted cultures, recycled C. shehatae and P. stipitis in aspen hydrolysate increased g ethanol/g sugar consumed from 0.39 and 0.41 to 0.45 and 0.47; while ethanol production from a 70:30 glucose-xylose solution (total sugars 140 g/L) was 45 g/L in 24 h and 60 g/L in 72 h with the adapted yeasts compared to 15 g/L and 28 g/L in the same times with the parent strains.     

Fructose phosphorylation by zymomonas mobilis glucokinase

Zymomonas mobilis ATCC 53431, a fructokinase negative mutant is unable to utilize fructose as a sole carbon source for growth. At high fructose concentrations, however, fructose was converted to ethanol. The fructose uptake displayed MICHAELIS -MENTEN kinetics with an apparent Km of 185 mM fructose. Purified glucokinase from ATCC 53431 and the wild strain ATCC 29191 both exhibited fructose phosphorylating activity at high fructose concentrations with an apparent Km value of 222 mM fructose. Glucokinase substrate specificity was found not be absolute, as previously reported.     

A H<Subscript>2</Subscript>O<Subscript>2</Subscript>-producing glyoxal oxidase is required for filamentous growth and pathogenicity in<Emphasis Type="Italic"> Ustilago maydis</Emphasis>

In the phytopathogenic fungus Ustilago maydis the mating-type loci control the transition from yeast-like to filamentous growth required for pathogenic development. In a large REMI (restriction enzyme mediated integration) screen, non-pathogenic mutants were isolated in a haploid strain that had been engineered to be pathogenic. In one of these mutants, which showed a specific morphological phenotype, the tagged gene, glo1 , was found to encode a product that is highly homologous to a glyoxal oxidase gene from the wood-rot fungus Phanerochaete chrysosporium. Glyoxal oxidase homologues are found in human, plant pathogenic fungi and in plants, but not in other mammals or yeasts. To confirm the function of the glo1 gene, null mutations were generated in compatible haploid U. maydis strains. In crosses null mutants were unable to generate filamentous dikaryons, and were completely non-pathogenic. Using a Glo1-overproducing strain we demonstrated that Glo1 is membrane bound, oxidizes a series of small aldehydes (<C4) and produces H₂O₂. The enzyme needs to be activated, presumably by auto-oxidation, to show full activity. A potential role for Glo1 during filamentous growth and pathogenic development of U. maydis is proposed.Electronic Supplementary Material Supplementary material is available in the online version of this article at Communicated by P. J. PuntThe first two authors contributed equally to this workWe dedicate this work to the memory of Jeff Schell, a charismatic and outstanding person who loved science and respected people     

Effect of calcium on the performance and morphology ofZymomonas mobilis ATCC 29191 in continuous ethanol fermentations

Summary The effect of calcium chloride, over a concentration range of 0–40mM (equivalent to 0–5.88g/L), on various steady-state parameters associated with the chemostat culture ofZ. mobilis ATCC 29191, in a defined salts medium containing 100g/L glucose, was examined. In contradiction of reports by other authors that calcium chloride (>2g/L) inhibits both the growth rate and ethanol yield while at the same time increasing the biomass yield, it was observed in the present study that 25mM (3.7g/L) CaCl₂ did not appreciably affect any of these fermentation parameters. The D_max (dilution rate for 95% substrate utilization) of 0.22/hr was not affected until the concentration of calcium chloride exceeded 30mM (4.41g/L). The apparent increase in biomass yield produced by calcium can be attributed to the formation of insoluble calcium carbonate. Calcium induced morphological changes of the biomass with filamentous growth were seen at concentrations >30 mM. Sparging with nitrogen gas reduces the dissolved carbon, dioxide, lessens the apparent inhibitory effect of calcium on the ethanol productivity and decreases the degree of filament formation.     

Morphology of Penicillium chrysogenum strains immobilized in calcium alginate beads and used in penicillin fermentation

Summary The morphology of two strains of Penicillium chrysogenum immobilized in calcium alginate and used in penicillin fermentation was examined. The degree and distribution of mycelial growth inside and on the surface of the beads depended on the strain, the cultivation media and the fermentation time. P. chrysogenum ATCC 12690 developed as a mycelial network inside the beads. The growth tendency of P. chrysogenum S₁ in micropellets was directed to the outer surface of the beads. At the end of the production phase only a trace of mycelia and no micropellets in the center of alginate beads were observed, while the outer surface and the subsurface were completely covered with mycelia.     

Molar growth yields of Zymomonas mobilis on glucose after the transition from anaerobic to aerobic continuous growth

An increase in the molar growth yield (Y_X/S = 14.3–20.3 g/mol) on glucose (25 mM) was achieved after the transition of Zymomonas mobilis ATCC 29191 from anaerobic to aerobic steady state growth at dilution rates of D = 0.31–0.40 1/h and under oxygen-unlimited conditions. The transfer of anaerobically or aerobically grown steady state cells into a fresh medium resulted in the higher values of Y_X/S. A positive correlation was established between biomass and acetaldehyde yield within the range of 5–9 mM acetaldehyde in the medium. An inhibitory effect of the exogenously added acetaldehyde (K_i = 16.7 ± 2.8 mM) on the ATPase activity was observed in vitro, using cell-free extracts of anaerobically grown Z. mobilis. The results obtained provide evidence that the increased values of biomass yield could be explained by the redirection of ATP usage during aerobic growth of Z. mobilis.     

Biomass protein formation by filamentous fungi on woody substrates

Summary Growth and biomass protein formation by filamentous fungi grown on pretreated tropical woods of Mesta (Hibiscus cannabinus Linn.) and Subabul [Leucaena leucocephala (Lam.) de Witt] as well as their isolated hemicellulose and cellulose fractions have been studied. Penicillium janthinellum and Penicillium funiculosum produced a biomass having 20 to 30% crude protein when grown on either hemicellulose, while growth on pretreated (autoclaved in 1% NaOH) wood or isolated cellulose fractions was comparatively poor and crude protein content only 5 to 8% in the biomass.NCL Communication no.3550     

The effect of CO2 ventilation on kinetics and yields of cell-mass and ethanol in batch cultures ofZymomonas mobilis

Summary The effect of CO₂ removal by continuous sparging of N₂ in batch cultures ofZymomonas mobilis (ATCC10988) was examined. N₂ sparging considerably reduces lag times in batch cultures, possibly because of continuous removal of CO₂ from the culture media. Ventilation of CO₂ from culture media results in an increase of about 15% in the average specific growth rate and about 12% in the cell-mass yield with no noticeable trend in the average specific glucose uptake and ethanol production rates. The overall ethanol yield on glucose, however, decreases slightly by 5%. Analysis of ventilated experiments show that the CO₂ production is directly coupled with the ethanol formation but not necessarily with the cell-mass production, indicating a decoupling of growth from ethanol production. Further, comparison of ventilated and non-ventilated experiments rules out the possibility of CO₂ accumulation in the culture media as a factor responsible for increasing growth inhibition and decoupling of growth from ethanol fermentation at increasing initial glucose concentrations in batch cultures.     

SO2-catalysed prehydrolysis of coniferous wood for ethanol production

Summary This paper reports studies of large scale, 1500 kg/h, SO₂-catalysed prehydrolysis of coniferous wood chips, samples then being hydrolyzed by a wood-saccharifying enzyme system followed by fermentation to ethanol in the laboratory. Hemicellulose hydrolysis using SO₂ catalyst (prehydrolysis) was found to be more effective than steam alone (autohydrolysis). Prehydrolysis time was 2 min, with steam pressure at 1.2 to 1.7 MPa (175 to 250 psig), and SO₂ catalyst 2.0 to 2.6% on dry wood. The amount of sugars recovered upon enzyme saccharification of the prehydrolysed wood was about 70% of the weight of the wood. When these combined hemicellulose and cellulose sugars were fermented by a pentose-fermenting strain of yeast,Pichia stipitis R, 372 L ethanol/tonne of (dry) wood was obtained.     

Genotypic and phenotypic correlationships among some strains ofLactobacillus helveticus

Summary Evidence for the presence of extrachromosomal elements inLactobacillus helveticus ATCC 15009 and the absence of plasmid DNA in two other strains ofL. helveticus is reported. These three strains did not show any difference in regard to lactose metabolism, proteolytic activity, and antibiotic resistance or in N-acetyl-D-glucosamine fermentation. The only difference found is a higher resistance to arsenate forL. helveticus ATCC 15009, suggesting linkage of this resistance to plasmids present in this strain.     

Instability of lactose and citrate metabolism of Leuconostoc strains

Summary The instability of Lac⁺ and Cit⁺ phenotypes was investigated inLeuconostoc mesenteroides subsp.cremoris ATCC 19245 and in four strains ofLeuconostoc mesenteroides subsp.dextranicum. The two phenotypes were linked respectively to a 14 Mdal and a 34 Mdal plasmid in Leuconostoc mesenteroides subsp.cremoris ATCC 19245. InLeuconostoc mesenteroides subsp.dextranicum the character Lac⁺ was linked to a 28 Mdal plasmid, while the Cit⁺ phenotype was stable.     

Response surface optimization ofLactobacillus plantarum batch growth

Summary Optimal conditions for batch growth ofLactobacillus plantarum, ATCC 8014, are a pH of 6.0, a temperature of 33°C, and an initial glucose concentration of 24 g/l. A maximum biomass concentration of 6.0 g/l was achieved. Growth parameters were also determined.     

Simultaneous saccharification and fermentation by mixed cultures ofBrettanomyces clausenii andPichia spipitis R of SO2-prehydrolysed wood

Summary Using pilot scale Wenger and Stake II reactors for prehydrolysing aspen and coniferous wood chips in the presence of SO₂ catalyst, highly digestible lignocellulosic substrates were generated from which about 90% yields of hemicellulose mostly in monomeric form could be recovered. Simultaneous saccharification and fermentation (SSF) of these SO₂ feedstocks by a mixed culture ofBrettanomyces clausenii andPichia stipitis R resulted in rapid and efficient fermentation giving a final yield of 369 and 360 L ethanol/tonne of the prehydrolysed woods, respectively. BecauseB. clausenii is an excellent cellobiose fermenter, no -glucosidase was needed during SSF.     

An elevation of the molar growth yield of Zymomonas mobilis during aerobic exponential growth

Elevated values of molar growth yield (Y_x/s = 14–26 g mol^–1) were obtained during exponential growth (μ > 0.4 h^–1) of Zymomonas mobilis ATCC 29191 by using reduced concentrations of glucose (6.25–100 mM) and increased oxygen supply (E _h > 300 mV) in the growth medium, as compared to the Y_x/s of anaerobic exponential growth (8–10 g mol^–1). Aerobically grown cells showed an increased maximum growth rate (μ_max), and a reduced specific glucose consumption rate (q_s), and specific ethanol formation rate (q_p), thus demonstrating a more pronounced energy-coupling growth under oxic conditions. These results can be neither explained by the concept of a solely operating Entner-Doudoroff pathway as an ATP source in aerobically growing cultures of Z. mobilis nor considered to be consistent with existing data on the lack of the Pasteur effect in this bacterium. Therefore, the results rather give evidence for the essential contribution of aerobic ATP generation under the reported conditions. Received: 24 September 1996 / Accepted: 9 December 1996     

Microbial transformation of sterols

Summary Arthrobacter simplex, Serratia marcescens, Fusarium and Mycobacterium were tested for their ability to transform phytosterol to Androsta 1, 4 diene 3, 17 dione (ADD). Arthrobacter simplex ATCC 6946 was found to be more efficient than the other species tested.     

Carbondioxide affects the growth rate of “oxygen limited”Escherichia coli at low concentrations of oxygen

Summary It is shown that addition of 1% CO₂ in Argon, containing traces of oxygen (<30 ppm O₂) to a described mineral salts medium leads to deblockage of the normal oxygen limited growth pattern ofEscherichia coli (ATCC 1524).     

Production of xylonic acid byPseudomonas fragi

Summary Eleven microbial strains were tested for their ability to produce xylonic acid from xylose. The production of xylonic acid by one of the strains,Pseudomonas fragi ATCC 4973, was further studied in laboratory fermenter scale. The yield of xylonic acid was 92 % of original sugar. Xylonic acid production seemed to be growth associated and it was found to be very sensitive to the decrease of pH.     

Growth requirements and the establishment of a chemically defined minimal medium inZymomonas mobilis

Summary A chemically defined minimal medium which fulfils the growth requirements of differentZymomonas mobilis strains has been established. The kinetics of ethanol production of the strains ATCC 10988, CU1, CP4 and 11163 grown on the minimal medium at different glucose concentrations were measured. All strains produced ethanol at rates similar to those on complete medium. The minimal medium described is suitable to study spontaneous metabolic deficiciencies and regulation of enzyme activities inZ.mobilis.