Mitochondrial DNA hypervariable region-1 sequence variation and phylogeny of the concolor gibbons, Nomascus

The still little known concolor gibbons are represented by 14 taxa (five species, nine subspecies) distributed parapatrically in China, Myanmar, Vietnam, Laos and Cambodia. To set the stage for a phylogeographic study of the genus we examined DNA sequences from the highly variable mitochondrial hypervariable region-1 (HVR-1 or control region) in 51 animals, mostly of unknown geographic provenance. We developed gibbon-specific primers to amplify mtDNA noninvasively and obtained >477 bp sequences from 38 gibbons in North American and European zoos and >159 bp sequences from ten Chinese museum skins. In hindsight, we believe these animals represent eight of the nine nominal subspecies and four of the five nominal species. Bayesian, maximum likelihood and maximum parsimony haplotype network analyses gave concordant results and show Nomascus to be monophyletic. Significant intraspecific variation within N. leucogenys (17 haplotypes) is comparable with that reported earlier in Hylobates lar and less than half the known interspecific pairwise distances in gibbons. Sequence data support the recognition of five species (concolor, leucogenys, nasutus, gabriellae and probably hainanus) and suggest that nasutus is the oldest and leucogenys, the youngest taxon. In contrast, the subspecies N. c. furvogaster, N. c. jingdongensis, and N. leucogenys siki, are not recognizable at this otherwise informative genetic locus. These results show that HVR-1 sequence is variable enough to define evolutionarily significant units in Nomascus and, if coupled with multilocus microsatellite or SNP genotyping, more than adequate to characterize their phylogeographic history. There is an urgent need to obtain DNA from gibbons of known geographic provenance before they are extirpated to facilitate the conservation genetic management of the surviving animals.     

中国长臂猿的分布(英文)

中国南部分布着3种长臂猿,它们是白眉长臂猿(Hylobates hoolock)、白掌长臂猿(H.lar)和黑冠长臂猿(H.concolor)。黑冠长臂猿在我国境内有3个亚种:指名亚种(H.c.concolor),白颊亚种(H.c.leucogenys)和海南亚种(H.c.hainanus)。这些种类目前只分布在云南和广东的海南岛,但在五十年代初也生活在广西的西南部。这些地区是长臂猿属分布区的东北边界。 同它们在中南半岛的地理特征相一致,中国的3种长臂猿的分布区不相重迭,以两条大江为界。白眉长臂猿栖居在云南怒江以西,白掌长臂猿生活在怒江与澜沧江之间地带,黑冠长臂猿占据澜沧江以东。但是有一处,即黑冠长臂猿的云南保山瓦窑分布点例外,该地的标本收藏在动物研究所。 对于黑冠长臂猿海南亚种的文献记述存在不确切之处。现有较多的标本表明,海南亚种的雌性个体头冠部具有界限明显的黑色大斑块;成年雌性个体背毛呈浅棕灰色或较鲜亮的赭黄色;背中部毛较长,在40—75毫米之间。 我们所研究的标本收藏在以下单位:纽约美国自然历史博物馆,北京自然博物馆,芝加哥福地自然历史博物馆,复旦大学生物系,中国科学院动物研究所,广州华南濒危动物研究所,上海自然博物馆,上海动物园(活体),中山大学生物系。     

中国长臂猿科动物的分类和保护现状

根据最新的长臂猿科分类系统和近年来开展的多次长臂猿调查,本文对我国长臂猿科的分类和保护进行了全面的回顾和综述,将为以后中国长臂猿的研究和保护提供基础资料。长臂猿科(Hylobatidae) 分为4 个属(Nomascus,Symphalangus,Hylobates, Hoolock ) 17 个种,其中我国分布有3 属6 种: 西黑冠长臂猿(N. concolor)、东黑冠长臂猿(N. nasutus)、海南长臂猿(N.hainanus)、北白颊长臂猿(N. leucogenys)、东白眉长臂猿(Hoolock leuconedys)和白掌长臂猿(Hylobates lar)。长臂猿曾经广泛分布于我国大部分地区,受栖息地丧失、退化和猎杀等因素的影响,目前长臂猿仅分布于云南、广西和海南等地。我国长臂猿的保护形势十分严峻,白掌长臂猿和北白颊长臂猿可能已经从中国消失;东黑冠长臂猿和海南长臂猿的数量都不足30 只,接近灭绝边缘;东白眉长臂猿的数量不足200 只;即使是数量最多的西黑冠长臂猿,其数量也仅有1 000 至1 300 只。严格执法、意识教育、科普宣传、长期的科学研究将有利于我国的长臂猿保护。     

Species identification of crested gibbons(Nomascus) in captivity in China using karyotyping-and PCR-based approaches

Gibbons and siamangs(Hylobatidae) are wel-known for their rapid chromosomal evolution, which has resulted in high speciation rate within the family. On the other hand, distinct karyotypes do not prevent speciation,allowing interbreeding between individuals in captivity,and the unwanted hybrids are ethical y problematic as al gibbon species are endangered or critical y endangered.Thus, accurate species identification is crucial for captive breeding, particularly in China where studbooks are unavailable. Identification based on external morphology is difficult, especially for hybrids, because species are usually similar in appearance. In this study, we employed G-banding karyotyping and fluorescence in situ hybridization(FISH) as well as a PCR-based approach to examine karyotypic characteristics and identify crested gibbons of the genus Nomascus from zoos and nature reserves in China. We characterized and identified five karyotypes from 21 individuals of Nomascus. Using karyotypes and mitochondrial and nuclear genes, we identified three purebred species and three hybrids, including one F2 hybrid between N.gabriellae and N. siki. Our results also supported that N. leucogenys and N. siki shared the same inversion on chromosome 7, which resolves arguments from previous studies. Our results demonstrated that both karyotyping and DNA-based approaches were suitable for identifying purebred species, though neither was ideal for hybrid identification. The advantages and disadvantages of both approaches are discussed. Our results further highlight the importance of animal ethics and welfare,which are critical for endangered species in captivity.     

Taxonomy,distribution, and status of gibbons (Hylobates) in Southern China and adjacent areas

Gibbons are small and arboreal apes restricted to southeastern tropical and southern subtropical regions in Asia. They are distributed from Assam in the northwest, eastward to south China and Vietnam, south through the Malay Peninsula to Sumatra, Borneo, Java, and the Mentawai Islands. Twenty-two genetically distinct populations of gibbons are generally recognized. Gibbons were once widely distributed in China; however, they are now primarily restricted to southern and southwestern Yunnan and Hainan Island. Their widest distribution and greatest species diversity is in Yunnan Province. Gibbons are rare in China and are now listed as a first class endangered species. Four gibbon species inhabit Yunnan Province in southern China. They areH. hoolock, H. lar, H. leucogenys, andH. concolor. There are three subspecies ofH. leucogenys: H. l. leucogenys, H. l. siki, andH. l. gabriellae. OnlyH. l. leucogenys inhabits China. Four subspecies ofH. concolor inhabit China. These areH. c. concolor, H. c. jingdongensis, H. c. furvogaster, andH. c. hainanus. The first three subspecies inhabit Yunnan andH. c. hainanus is found only on Hainan Island.H. lar yunnanensis is the subspecies ofH. lar in southern China.H. hoolock leucogenys is the subspecies ofH. hoolock in southern China.H. concolor jingdongensis, H. concolor furvogaster, andH. lar yunnanensis are all newly proposed subspecies byMa andWang (1986). The data on southern China gibbons presented here is based on an analysis of the skeletons and skins of 49 specimens held at the Kunming Institute of Zoology, Kunming, Yunnan.     

A complete species-level phylogeny of the Hylobatidae based on mitochondrial ND3-ND4 gene sequences

The Hylobatidae (gibbons) are among the most endangered primates and their evolutionary history and systematics remain largely unresolved. We have investigated the species-level phylogenetic relationships among hylobatids using 1257 bases representing all species and an expanded data set of up to 2243 bases for select species from the mitochondrial ND3-ND4 region. Sequences were obtained from 34 individuals originating from all 12 recognized extant gibbon species. These data strongly support each of the four previously recognized clades or genera of gibbons, Nomascus, Bunopithecus, Symphalangus, and Hylobates, as monophyletic groups. Among these clades, there is some support for either Bunopithecus or Nomascus as the most basal, while in all analyses Hylobates appears to be the most recently derived. Within Nomascus, Nomascus sp. cf. nasutus is the most basal, followed by N. concolor, and then a clade of N. leucogenys and N. gabriellae. Within Hylobates, H. pileatus is the most basal, while H. moloch and H. klossii clearly, and H. agilis and H. muelleri likely form two more derived monophyletic clades. The segregation of H. klossii from other Hylobates species is not supported by this study. The present data are (1) consistent with the division of Hylobatidae into four distinct clades, (2) provide the first genetic evidence for all the species relationships within Nomascus, and (3) call for a revision of the current relationships among the species within Hylobates. We propose a phylogenetic tree as a working hypothesis against which intergeneric and interspecific relationships can be tested with additional genetic, morphological, and behavioral data.     

黑长臂猿的分布、现状与保护

黑长臂猿 (Hylobates concolor)是现生 1 1种长臂猿中其系统地位最低的灵长类。历史时期长臂猿曾广泛分布在我国南部的大部省区。自公元 4世纪以来 ,它们的分布发生了很大变化。分布区从北到南 ,从东到西急剧缩小 ,现黑长臂猿缩小到只在海南岛、云南南部和越南北部 ,已分化为 6个亚种。分布于我国的 5亚种中 ,海南亚种 (H . c. hainanus)现今仅20余只 ,是最濒危的一个亚种 ;.北部湾亚种 (H.c.nasutus) 50年代曾在广西西南部发现 ,60 -70年代已绝迹 ;指名亚种 (H.c.concolor)主要分布于越南北部、滇南和滇中哀牢山。滇南约有100余只 ,滇中哀牢山可能有40 - 60群 ,180 - 240只 ;景东亚种 (H . c. jingdongensis)为滇中无量山的特有亚种 ,现有100 - 116群 ,430 - 500只 ;滇西亚种 (H . c. furvogaster) ,只分布在滇西南的沧源、镇康、云县和耿马等地 ,约有 2 6-42群 ,100 - 150只。现今 ,黑长臂猿的分布区已不足1000Km2 ,总数量约1000只 ,为高度濒危的灵长类动物。造成黑长臂猿濒危的主要原因是 :热带和南亚热带原始森林的被破坏和缩小、人类活动的干扰使生境破碎和恶化、过度猎捕和长臂猿自身的生物学弱点。目前 ,中国的黑长臂猿已在 9个自然保护区中得到保护。     

Subspecific genetic differences in the saddle-back tamarin (Saguinus fuscicollis) postcranial skeleton

Saddle-back tamarins (Saguinus fuscicollis) have been differentiated into subspecies based on coat color and facial morphology. Morphology of first-generation genetic hybrids can provide an understanding of population differences and evolution that may otherwise be difficult to obtain. This study compares postcranial morphology in two hybrids of saddle-back tamarins (S. f. illigeri x S. f. lagonotus and S. f. illigeri x S. f. leucogenys) to the purebred subspecies. We examine whether postcranial morphology differs between the purebred subspecies and their hybrids, and whether hybrids exhibit heterosis indicative of genetic differences between the parental subspecies. Fifty postcranial dimensions, or traits, were measured on 287 S. fuscicollis skeletons. Measurements were corrected for sex differences and environmental differences (wild-derived or laboratory-born). Females were larger than males for most postcranial dimensions, especially in the pelvis. Significant environmental differences were found throughout the postcranial skeleton, with wild-derived animals generally larger than animals born in the laboratory. Significant heterosis was found for six postcranial traits in the S. f. illigeri x S. f. leucogenys cross, and heterosis was found for 15 postcranial traits in the S. f. illigeri x S. f. lagonotus cross. These results suggest that subspecies differences in skeletal morphology are generally due to genetic rather than environmental differences. The subspecies appear to represent geographic isolates that differ in gene frequencies and directional dominance for skeletal traits.     

Vocal Diversity and Taxonomy of Nomascus in Cambodia

It is usually thought that Nomascus gabriellae is the only Nomascus sp. in Cambodia. We studied vocal diversity among different wild populations of Nomascus in Cambodia to assess their taxonomic relationships and to examine whether their vocal patterns correspond to forms previously described for Nomascus leucogenys siki and Nomascus gabriellae. We tape-recorded crested gibbon songs in southern Mondulkiri Province, in central Rattanakiri Province, and in 2 different districts of the Virachey National Park in northern Rattanakiri. We also tape-recorded typical songs of Nomascus leucogenys siki near the type locality of the taxon in the Bach Ma National Park in central Vietnam. We analyzed 40 song bouts from different gibbon groups, including 151 phrases of 33 females and 235 phrases of 39 males. Discriminant analyses revealed marked separation of the most southern songs (Mondulkiri) from those of all other localities. Vocal differences among the 3 gibbon populations in northeast Cambodia (Rattanakiri) are less pronounced; they do not differ more among each other than each of them differs from the northernmost sample from Bach Ma (Vietnam). Vocal characteristics of the study populations revealed no cline, and populations do not differ significantly in vocal variability. We conclude that Cambodian crested gibbons represent 2 distinct taxa: Those from southern Mondulkiri are Nomascus gabriellae, those from northeast Cambodia (Rattanakiri) closely correspond to the sample from Bach Ma (Vietnam) and, together with the latter, represent a different taxon. We provisionally assign them to Nomascus leucogenys siki because of the close geographic distance between Bach Ma and the type locality of the taxon. We postulate that a taxonal boundary exists between southern Mondulkiri and central Rattanakiri and discuss the possible factors that may have acted as distribution barriers.     

Sarcocystis sp. in muscles of free-ranging Florida panthers and cougars (Felis concolor)

Sarcocysts of Sarcocystis sp. were found in the striated muscles from 11 of 14 wild Florida panthers (Felis concolor coryi) and four of four cougars (two wild F. concolor stanleyana and two captive F. concolor of undetermined subspecies). The common occurrence of sarcocysts in muscles of top carnivores such panthers and cougars is unexplained. This stage of the life cycle is normally confined to the muscles of the prey species. Because large felids are rarely preyed upon, it is unlikely that a species of Sarcocystis has evolved using large cats as intermediate hosts. Therefore, the presence of these sarcocysts might be an indication of immune compromise in these felids, enabling the atypical development of the sarcocysts.     

Discrimination of subspecies in a polymorphic species Hyalomma marginatum (Acari, Ixodidae) based on adult stage

Morphological characteristics allowing discriminating adult stages of four subspecies of Hyalomma marginatum (H. m. marginatum, H. m. turanicum, H. m. rufipes and H. m. isaaci) are displayed. The subspecies status of all named forms is confirmed. The main discriminating characters for adults of these subspecies are peculiarities of scutal or conscutal punctations and a shape of the dorsal tale of spiracular plates (Fig. 1, 1-4; 2, 4-7; 4, 1, 2; 5, 1, 2, 6, 5-8). Nevertheless, there are a number of facts, which support only the subspecific rank of these taxa. In Turkmenistan, there is a zone inhabited by forms, adult stages of which are morphologically intermedial between H. m. marginatum and H. m. turanicum. A zone of intermedial forms between H. m. turanicum and H. m. rufipes exists in Arabian Peninsula (Hoogstraal e. a., 1981). An absence of clear discriminative characters between immatures of H. m. marginatum, H. m. turanicum and H. m. rufipes also confirms the subspecies level of these taxa. H. m. isaaci is the most differentiated subspecies. It is difficult to estimate relationships between the latter subspecies and H. m. turanicum because of a deficit of materials. However, clear morphological differences of H. m. isaaci immature stages from other subspecies were noticed (Apanaskevich, 2003). Therefore, it is quite probable that H. m. isaaci might deserve the species rank. Further analysis of relationships between subspecies of H. marginatum needs additional materials represented by all stages from zones containing intermedial forms between recently recognized subspecies.     

Phylogenetic Relationships among Asian species of Petaurista (Rodentia, Sciuridae), Inferred from Mitochondrial Cytochrome b Gene Sequences

To elucidate the phylogenetic relationships among four species belonging to the genus Petaurista (P. alborufus castaneus, P. alborufus lena, P. leucogenys leucogenys, P. leucogenys nikkonis, P. petaurista melanotus, and P. philippensis grandis), we investigated the partial sequences (1,068 bp) of the mitochondrial cytochrome b gene for these giant flying squirrels. Phylogenetic trees (NJ, MP, and ML trees) constructed from cytochrome b sequences indicated that P. leucogenys was grouped independently with other species, and that P. philippensis was most closely related to P. petaurista with 99-100% bootstrap values. In addition, two subspecies of P. alborufus did not form a single clade: P. alborufus castaneus from China was most distantly related to the other species, whereas P. alborufus lena from Taiwan was closely related to P. petaurista and P. philippensis with 82-90% bootstrap values. This result suggests that it is reasonable to regard P. alborufus lena as a distinct species from P. alborufus castaneus.     

Population genetics and morphological comparisons of migratory European (Hirundo rustica rustica) and sedentary East-Mediterranean (Hirundo rustica transitiva) barn swallows

Speciation processes are largely determined by the relative strength of divergent selection versus the magnitude of gene flow. The barn swallow (Hirundo rustica) has a broad geographic distribution that encompasses substantial geographic variation in morphology and behavior. The European (H. r. rustica) and East-Mediterranean (H. r. transitiva) subspecies are closely related, despite differing in morphological and life-history traits. To explore patterns of genetic differentiation and gene flow, we compared morphological and genetic variation among the nonmigratory breeding population of H. r. transitiva from Israel and the migratory population of H. r. rustica that passes through Israel and compared it with the genetic differentiation between H. r. transitiva from Israel and a breeding population of H. r. rustica from the United Kingdom that uses a different migratory flyway. Mitochondrial haplotype network analysis suggests that the European and East-Mediterranean populations are intermixed, although there was low but significant genetic differentiation between the subspecies based on both mitochondrial (F(ST) = 0.025-0.033) and microsatellite (F(ST) = 0.009-0.014) loci. Coalescent-based analyses suggest recent divergence and substantial gene flow between these populations despite their differences in morphological and behavioral traits. The results suggest that these subspecies are undergoing a differentiation process in the face of gene flow, with selection possibly operating on sexually selected traits.     

Polymorphism and inheritance of serum esterases and beta-globulins in the paradise fish (Macropodus opercularis; Anabantidae)

Electrophoretic variants of serum esterases and beta-globulins in two subspecies of paradise fish (Macropodus opercularis) were studied. Four esterase loci (Est-1, Est-2, Est-3 and Est-4), a single transferrin (Tf) and another major beta-globulin locus (Bg) were identified by segregational analysis. Est-3 seems to be a monomorphic locus. Three alleles of Est-1, two of Est-2, two of Est-4, four of Tf and two alleles of Bg were found in the laboratory population. None of these loci were closely linked. Electrophoretic patterns of F1 hybrids confirmed the monomeric structures of each of the studied proteins. Allelic segregation at the Tf and Bg loci was normal in F2 and backcross populations. In crosses of the two Macropodus subspecies there were deviations from Mendelian ratios because of missing recombinant esterase phenotypes. Each of these would have been homozygous Est-2f/f. We suppose that Est-2f/f causes lethality in the early phase of development, except in the Est-1c/c, Est-2f/f combination characteristic of the parental subspecies M.o. concolor.     

Genetic variations in the hybrids of rice (Oryza sativa) and sorghum (Sorghum vulgare)

Summary Some of results from morphological and cytological observations and esterase-isozyme studies of a rice-sorghum hybrid are presented in this paper. There is a great diversity of morphological characters and some special characteristics in the progenies of the hybrids of rice with sorghum. The meiosis of pollen mother cells in the early generations of the hybrid was found to be abnormal. One main band coinciding with one found in sorghum but lacking in rice appeared in the majority of the hybrid lines. This band is characteristic of a are the specificities of the distant hybridization of rice and sorghum, and is rarely observed in the intervariety hybrids or hybrids between subspecies of Oryza sativa, indica and japonica. On the basis of these facts we concluded that the hybrids obtained are true hybrids of rice and sorghum.     

Cytogeography and chromosome evolution of subgenus Tridentatae of Artemisia (Asteraceae)

The subgenus Tridentatae of Artemisia (Asteraceae: Anthemideae) is composed of 11 species of various taxonomic and geographic complexities. It is centered on Artemisia tridentata with its three widespread common subspecies and two more geographically confined ones. Meiotic chromosome counts on pollen mother cells and mitotic chromosome counts on root tips were made on 364 populations ( = 3.1 plants per population). These population counts are ～60% of all Tridentatae counts. Some are first records for taxa. The Tridentatae are a polyploid complex (x = 9) with ploidy levels from 2x to 8x, but mostly 2x (48%) and 4x (46%). Polyploidy occurs in nine of the 11 species and in many subspecies as well. Supernumerary or b chromosomes are present only at a low frequency. In the principal species, A. tridentata, 2x plants are larger than 4x ones, which are adapted to drier conditions, probably in consequence of their slower growth rates. Gigas diploidy is a phenomenon shared by some other woody genera, but is in contrast to the gigas polyploid nature of many herbaceous genera. Polyploidy occurs within populations and is essentially autoploid. Hybridization sometimes occurs at taxa interfaces in stable hybrid zones. Stable Tridentatae hybrid zones coupled with the group's inherent propensity for polyploidization has led to the establishment of a geographically and numerically large and successful complex of species.     

Genetic instability of a progeny from a somatic hybrid between tomato (Lycopersicon esculentum) and L. peruvianum

Some morphological characteristics of a progeny (H2) derived from a somatic hybrid (H1: 2Pn = 4x = 48) between tomato ‘Ponderosa’ and L. peruvianum were investigated to determine the genetic stability. The H2 progeny possessed morphological characteristics that were either similar to one fusion parent, intermediate between those of the two fusion parents, or that were unique. Some morphological characteristics in the H2 progeny were quite variable between the individual plants. Chromosome numbers of H2 progeny, pollen mother cells of H1, and hybridization patterns of ribosomal RNA gene (rDNA) of H2 progeny were investigated to elucidate the main causes of the morphological variations observed in the H2 progeny. From the results, it is suggested that the presence of aneuploid and chromosome pairing, including autosyndesis in the H1, were the main causes of morphological variations in individuals in the H2 progeny.     

Polymorphism and inheritance of serum esterases and β-globulins in the paradise fish (Macropodus opercularis; Anabantidae)

Electrophoretic variants of serum esterases and β-globulins in two subspecies of paradise fish ( Macropodus opercularis ) were studied. Four esterase loci ( Est-1, Est-2, Est-3 and Est-4 ), a single transferin ( Tf ) and another major β-globulin locus ( Bg ) were identified by segregational analysis. Est-3 seems to be a monomorphic. locus. Three alleles of Est-1 , two of Est-2 , two of Est-4 , four of Tf and two alleles of Bg were found in the laboratory population. None of these loci were closely linked. Electrophoretic patterns of F₁ hybrids confirmed the monomeric structures of each of the studied proteins. Allelic segregation at the Tf and Bg loci was normal in F₂ and backcross populations. In crosses of the two Macropodus subspecies there were deviations from Mendelian ratios because of missing recombinant esterase phenotypes. Each of these would have been homozygous Est-2^f/f . We suppose that Est-2^f/f causes lethality in the early phase of development, except in the Est-1^c/c, Est-2^f/f combination characteristic of the parental subspecies M.o. concolor .     

双花木属和壳菜果属(金缕梅科)的核型研究

本文对金缕梅科Hamamelidaceae双花木属Disanthus Maxim．的长柄双花木D．cercidifolius subsp．longipes和单种属壳菜果属Mytilaria Lec.首次进行了染色体计数和核型分析。结果表明：长柄双花木与产自日本的双花木D. cercidifolius subsp．cercidifolius的体细胞染色体数目一致,均为2n＝16,前者无“st”或“t”染色体,表明该亚种可能比较原始;壳菜果Mytilaria laosensis Lec．的染色体数目为2n＝26,x=13。前人报道的金缕梅科染色体基数为x＝8和x＝12,因此x＝13可能是金缕梅科的一个新染色体基数。联系该属的形态特征及其与马蹄荷属Exbucklandia R．W．Brown的关系,作者支持将壳菜果属处理为独立的亚科,即壳菜果亚科Mytilarioideae。