Using Metabolomics To Estimate Unintended Effects in Transgenic Crop Plants: Problems, Promises, and Opportunities

Transgenic crops are widespread in some countries and sectors of the agro-economy, but are also highly contentious. Proponents of transgenic crop improvement often cite the “substantial equivalence” of transgenic crops to the their nontransgenic parents and sibling varieties. Opponents of transgenic crop improvement dismiss the substantial equivalence standard as being without statistical basis and emphasize the possible unintended effects to food quality and composition due to genetic transformation. Systems biology approaches should help consumers, regulators, and other stakeholders make better decisions regarding transgenic crop improvement by characterizing the composition of conventional and transgenically improved crop species and products. In particular, metabolomic profiling via mass spectrometry and nuclear magnetic resonance can make broad and deep assessments of food quality and content. The metabolome observed in a transgenic variety can then be assessed relative to the consumer and regulator accepted phenotypic range observed among conventional varieties. I briefly discuss both targeted (closed architecture) and nontargeted (open architecture) metabolomics with respect to the transgenic crop debate and highlight several challenges to the field. While most experimental examples come from tomato (Solanum lycoperiscum), analytical methods from all of systems biology are discussed.     

Paradoxes of biodiversity,phylogeny, and taxonomy of cyanobacteria

The biodiversity of cyanobacteria is paradoxical since these bacteria vary in cytological characters although are metabolically uniform. Cyanobacterial phylogeny is also paradoxical as the structural genes of rRNA are too conservative for a large phylum. On the paradoxical evolutionary tree, neighbors have strongly contrasting phenotypes, while objects with similar phenotypes demonstrate a heterological structure of 16S rDNA. The systematics of cyanobacteria is paradoxical, too, since it is logically contradictory: on the one hand, phylum BX Cyanobacteria generally is separated on molecular-biological grounds. On the other hand, in accordance with the traditional botanical algorithm used in classification of blue-green algae, this phylum is artificially subdivided into morphological groups (ultrastructural characters are taken into account only in rare cases). A unique trait of the taxonomy of cyanobacteria (with rare exceptions, e.g., Cyanobacterium stanieri) is its general nonusage of the category of species. The species epithet is replaced by a stain index (e.g., Anabaena PCC 7122).     

Paradoxes in Western Creativity

Statistical data, showing percentages of creativity in the various arts and philosophy among different nations during the history of Western civilization, can now be presented. This covers the ground quantitatively which Kroeber's Configurations of Culture Growth covered qualitatively. The study not only reveals different patterns among nations, but indicates the nature of the problem to be overcome if mankind is to achieve a universal maximum release of creativity for all in the future.     

A Plague of Paradoxes: AIDS, Culture, and Demography in Northern Tanzania

. Plague of Paradoxes: AIDS, Culture, and Demography in Northern Tanzania. Philip W. Setel. Chicago: University of Chicago Press, 1999.308 pp.     

Paradoxes of Hymenoptera flight muscles,extreme machines

In the Carboniferous, insects evolved flight. Intense selection drove for high performance and approximately 100 million years later, Hymenoptera (bees, wasps and ants) emerged. Some species had proportionately small wings, with apparently impossible aerodynamic challenges including a need for high frequency flight muscles (FMs), powered exclusively off aerobic pathways and resulting in extreme aerobic capacities. Modern insect FMs are the most refined and form large dense blocks that occupy 90% of the thorax. These can beat wings at 200 to 230 Hz, more than double that achieved by standard neuromuscular systems. To do so, rapid repolarisation was circumvented through evolution of asynchronous stimulation, stretch activation, elastic recoil and a paradoxically slow Ca²⁺ reuptake. While the latter conserves ATP, considerable ATP is demanded at the myofibrils. FMs have diminished sarcoplasmic volumes, and ATP is produced solely by mitochondria, which pack myocytes to maximal limits and have very dense cristae. Gaseous oxygen is supplied directly to mitochondria. While FMs appear to be optimised for function, several unusual paradoxes remain. FMs lack any significant equivalent to the creatine kinase shuttle, and myofibrils are twice as wide as those of within cardiomyocytes. The mitochondrial electron transport systems also release large amounts of reactive oxygen species (ROS) and respiratory complexes do not appear to be present at any exceptional level. Given that the loss of the creatine kinase shuttle and elevated ROS impairs heart function, we question how do FM shuttle adenylates at high rates and tolerate oxidative stress conditions that occur in diseased hearts?     

Zaire butterflies and faunal diversity in the tropics

Samples of butterflies were collected along the Zaire River from its source to Kisangani and in the Ituri region. The number of species flying in the same area has been estimated wherever possible, and the degree of faunal similarity at different sites. The number of species increases as one proceeds north from 50–100 to 100–150, and the fauna is separable into two groups. The difference in faunal composition and diversity is related to the southern boundary of the rain forest. The comparative poorness of the butterfly fauna in tropical Africa compared to tropical South America is discussed, with reference to the parallel difference in the bird faunas of the two continents.     

Social interactions and the life history of femalePan paniscus in Wamba,Zaire

The unit-group of Pan paniscustends to form one large mixed party consisting of most of its members. Females usually stay in the party irrespective of their estrous state. They aggregate in the center of the party; and, older females stay in the most central part. Adult and adolescent sons of the old adult females stay in the central part more than males without mothers in the unit-group do. Females leave their natal unit-groups as older juveniles or in early adolescence and. settle in another unit-group after visiting several. Newly immigrated young females are eager to have social interactions with senior females to improve their social positions. Females become less eager to interact socially with other females when they have their own offspring. The strong bond between mother and son continues into his adulthood; and, females in old age become important members of the unit-group, both as the targets of association for younger females and as the mothers of highranking males. High social status of females seems related to their cohesive grouping tendency. The consistency of the multimale/multifemale party and the existence of prominent mother-offspring subunits are unique characteristics of P. paniscusamong the Pongidae. This social structure may provide a feasible model of the basic society from which human society evolved.     

Census,habitat preference,and polyspecific associations of six monkeys in the Lomako Forest,Zaire

This paper reports preliminary data on a number of poorly known cercopithecids inhabiting the Lomako Forest, Zaire. Data include those on density, biomass, group size, the relationship between group type (mono vs. polyspecific) and forest type (mixed primary, secondary, monodominant primary, and swamp), and vertical stratification. Species examined are Colobus angolensis, Cercocebus aterrimus, Cercopithecus wolfi, Cercopithecus ascanius, Cercopithecus neglectus, and Allenopithecus nigroviridis. The density and biomass for the Lomako Forest anthropoids (excluding Cercopithecus neglectus and A. nigroviridis) are 165 ind/km² and 1,034 kg/km², respectively. Cercopithecus wolfi and Colobus angolensis are found in group sizes similar to those reported from other sites while Cercopithecus ascanius, Cercocebus aterrimus, and A. nigroviridis display group sizes unique to the Lomako. While Colobus angolensis, Cercocebus aterrimus, Cercopithecus ascanius and Cercopithecus wolfi were found, to varying extents, in all four forest types, Cercopithecus neglectus and A. nigroviridis inhabited only swamp forest. The different species sort out along vertical continua both within and between the four forest types. © 1994 Wiley-Liss, Inc.     

Minor and trace elements in human milk from Guatemala,Hungary, Nigeria,Philippines, Sweden,and Zaire

Concentrations of As, Ca, Cd, Cl, Co, Cr, Cu, F, Fe, Hg, I, K, Mg, Mn, Mo, Na, Ni, P, Pb, Sb, Se, Sn, V, and Zn were determined in human whole milk samples from Guatemala, Hungary, Nigeria, Philippines, Sweden, and Zaire; in most of these countries, three groups of subjects representing different socioeconomic conditions were studied. Analytical quality control was a primary consideration throughout. The analytical techniques used were atomic absorption spectrophotometry, atomic emission spectrometry with an inductively coupled plasma, colorimetry, electrochemistry, using an ion-selective electrode and neutron activation analysis. The differences between median concentrations of Ca, Cl, Mg, K, Na, and P (minor elements) were lower than 20% among the six countries. Among trace elements, concentrations observed in Filipino milk for As, Cd, Co, Cr, Cu, F, Fe, Mn, Mo, Ni, Pb, Sb, Se, and V were higher than for milk samples from other countries. The remaining five countries showed a mixed picture of high and low values. In the case of at least some elements, such as, F, I, Hg, Mn, Pb, and Se, the environment appears to play a major role in determining their concentrations in human milk. The nutritional status of the mother, as reflected by her socioeconomic status, does not appear to influence significantly the breast milk concentrations of minor and trace elements. Significant differences exist between the actual daily intakes observed in this study and current dietary recommendations made by, for example, WHO and the US National Academy of Sciences. These differences are particularly large (an order of magnitude or more!) for Cr, F, Fe, Mn, and Mo; for other elements, such as, Ca, Cu, Mg, P, and Zn, they amount to at least a factor 2. In the opinion of the present authors, these findings point to the need for a possible reassessment of the dietary requirements of young infants with respect to minor and trace elements, particularly for the elements Ca, Cr, Cu, F, Fe, Mg, Mn, Mo, P, and Zn.     

Correlates and implications of breast-feeding practices in Bas Zaire

A sample of 1871 women having a child under 3 years old in Bas Zaire was studied to determine the correlates of breastfeeding practices and to examine the interrelationships among breastfeeding, contraceptive practices and desire for pregnancy. The methods of analysis applied were life table analysis and its multivariate extensions. Most of the findings in this analysis are consistent with current literature on the correlates of the duration of breastfeeding. Maternal education, economic status, age, parity, urban residence, pregnancy, and sex of the index child were significantly related to the length of breastfeeding. Among non-pregnant women, current desire for pregnancy was also related to breastfeeding status when the length of time since birth of the last child was taken into consideration. Rural women were reportedly ready for another pregnancy sooner after the birth of their last child than were urban women. Breastfeeding appears to be the most important means of contraceptive protection in the study population. The effective traditional method of extended postpartum abstinence is not widely prevalent, particularly among the urban sample, and indeed seems to be on the decline. The data presented here also suggest that breastfeeding pratices are changing in this area of Africa where little economic development has occurred in the past 20 years. This research suggests that if current trends continue, fertility levels are likely to increase significantly. The findings also indicate that Bas Zairian mothers want to space their births and for this reason may be receptive to family planning programs that use appropriate strategies.     

Locomotor behavior of Pan paniscus in Zaire

The locomotor behavior of Pan paniscus was studied over a four-week period in Equateur, Republic of Zaire. Bonobos were found to be both arboreal and terrestrial in their daily activities. In the trees adult bonobos are basically quadrupedal, but they also have significant components of armswinging, diving, leaping, and bipedalism in their locomotor repertoire.     

Uses,nutritional composition,and ecogeography of four species ofPsophocarpus (fabaceae,phaseoleae) in Zaire

In Zaire the distribution of four of the wild species in the genusPsophocarpus ranges from humid, evergreen, Guinea-Congolian rainforests to high altitude woodlands, dry semi-deciduous forests, and savanna. Material ofPsophocarpus scandens, P. grandiflorus, P. lancifolius, P. lecomtei, andP. lancifolius (yellow-seeded form) were collected from wild and naturalized populations in Zaire. Various organs ofP. scandens, P. grandiflorus, andP. lancifolius are used as food sources, medicinals, and as sources of tannins.Psophocarpus lancifolius andP. lecomtei have reportedly been used as a food source and fish poison, respectively. The various organs were analyzed for carbohydrate, lipid, N, S, P, K, Mg, Ca, Na, Fe, Al, Mn, B, Cu, and Zn. In their own right, these species have potential for wider use as food sources and genetic material for improvement breeding with the cultivated winged bean, Local names, phenological notes, presence of pests and diseases, and ecogeographical information are presented.     

Ecology and ovarian function among Lese women of the Ituri Forest, Zaire

Ovarian function is examined in 35 Lese women inhabiting the Ituri Forest of northeastern Zaire over a period of 4 months through measurements of progesterone in saliva samples collected twice weekly. Ovulatory frequency is found to be only 56% on average, with a pattern of age variation similar to that observed in western women, though lower in level at each age. Average luteal progesterone levels of the Lese women are lower than those of Boston controls even if only ovulatory cycles are considered. Women with the poorest nutritional status, inferred from longitudinal weight changes and weight for height, show the greatest compromise of ovarian function, and the average ovulatory frequency of the whole sample declines in parallel with a period of weight loss over four months. It is suggested that low ovulatory frequency and luteal insufficiency contribute to the low fecundity of the Lese population and that nutritional status is likely to be one of the ecological factors modulating this effect.     

Predation on mammals by chimpanzees in the montane forest of Kahuzi, Zaire

The rate of predation on mammals by chimpanzees was determined from carcasses and from fecal specimens found on fresh trails during a 16-month period in the montane forest of Kahuzi-Biega National Park, Zaire. A unit-group of semi-habituated chimpanzees, composed of 22 – 23 individuals including 8 adult or adolescent males, appeared to kill about 18 – 30 mammalian prey (16 – 28Cercopithecus monkeys) per year, if the multiple kills by chimpanzees were not considered. A juvenile l'Hoest's monkey was recorded for the first time as the prey of chimpanzees in this study. Predation occurred in the late dry and the early rainy seasons, when the diversity of ripe fruits was the highest during the year. The Kahuzi chimpanzees tended to kill mammals less frequently but to killCercopithecus monkeys more frequently than chimpanzees in other habitats. The absence of red colobus monkeys, which are the most frequent prey in Gombe, Mahale, and Tai, might be responsible for the low predation rate. However, the estimated rate of predation onCercopithecus monkeys is the highest record among various chimpanzee habitats. At least 11 – 18% of theCercopithecus population seemed to be lost annually as a result of being killed by chimpanzees. Chimpanzees may be the most important predators on these monkeys in the absence of leopards at Kahuzi. The examination of fecal samples and carcasses suggested that adult (probably male) or adolescent chimpanzees tended to eat juvenile or subadult monkeys most frequently, as is also seen for chimpanzees in Gombe, Mahale, and Tai.