Allelopathy as a Tool in the Management of Biotic Resources in Agroecosystems

In modern agriculture, natural plant communities may be replaced by a single crop species. Weeds, some microorganisms, and viruses, as well as some herbivores are organisms that should be eliminated. Pesticides and fertilizers not only affect the pests and crops, but soil, non-pest species, water, food, and humans. In traditional agriculture weeds are components with an important ecological role in the maintenance of the system. Some weeds have been used as tools to control the growth of other weeds in traditional agroecosystems. Researchers on sustainable and organic agriculture get valuable information from traditional agriculture and currently are conducting research on plant breeding, soil fertility and tillage, crop protection, and cropping systems. Allelopathy and chemical ecology are directly involved in each of these fields and can play an important role in crop productivity, conservation of genetic diversity, and maintenance of ecosystems stability. Allelopathy has been shown to be related with problems of chemical interference between crops and weeds, crops and crops, toxicity of crops and weeds residues, and/or crops and weeds exudates. Problems of autotoxicity, orchard replanting, and forest regeneration are also referred as allelopathic. Allelopathy is strongly coupled with other stresses of the environment, including insects and disease, temperature extremes, nutrient and moisture variables, radiation, and herbicides. These stress conditions often enhance allelochemical production and increase the potential for allelopathic interference. Allelopathy offers potential for weed control through the production and release of allelochemicals from plants. Allelochemicals may impact the availability of nutrients through effects on the symbiotic microbes. Destruction and changes in the use of soils in the tropics have decreased biodiversity, bringing about the loss of valuable natural products. Many different types of useful products such as natural pesticides and drugs can arise from allelopathy studies. New methods must be generated for allelopathy as a part of the biotic resources management strategies.     

Synthesis and plant growth inhibitory activity of N-trans-cinnamoyltyramine: its possible inhibition mechanisms and biosynthesis pathway

The search for potent, selective bioherbicides has been the focus of numerous studies for several decades. Developing an economically viable total chemical synthesis procedure has been the challenge for commercial-scale application of these nature-derived chemicals. An efficient and low-cost total synthesis of an allelopathic and antitumor N-trans-cinnamoyltyramine (NTCT) first reported in rice (Oryza sativa L.) was successfully achieved by one-step amidation from trans-cinnamic acid and tyramine. The synthesized NTCT inhibited root and hypocotyl growth of cress (Lepidium sativum L.) and barnyardgrass (Echinochloa crus-galli L.) at concentrations as low as 0.24?μM. The means of ED₅₀ (the effective dose required for 50% plant growth inhibition) levels of the compound on cress and barnyardgrass hypocotyl and root elongations were 0.96 and 0.73?μM, respectively. Potential mechanisms underlying NTCT growth inhibition and its biosynthesis pathway were also suggested. The developed synthesis strategy could permit production of this synthesized allelochemical at a commercial scale as a bioherbicide.     

Secondary metabolites in plants: transport and self-tolerance mechanisms

Plants produce a host of secondary metabolites with a wide range of biological activities, including potential toxicity to eukaryotic cells. Plants generally manage these compounds by transport to the apoplast or specific organelles such as the vacuole, or other self-tolerance mechanisms. For efficient production of such bioactive compounds in plants or microbes, transport and self-tolerance mechanisms should function cooperatively with the corresponding biosynthetic enzymes. Intensive studies have identified and characterized the proteins responsible for transport and self-tolerance. In particular, many transporters have been isolated and their physiological functions have been proposed. This review describes recent progress in studies of transport and self-tolerance and provides an updated inventory of transporters according to their substrates. Application of such knowledge to synthetic biology might enable efficient production of valuable secondary metabolites in the future.     

Physico‐chemical mechanisms of resistance to shoot fly,Atherigona soccata in sorghum,Sorghum bicolor

Sorghum shoot fly, Atherigona soccata is an important pest of sorghum, and host plant resistance is one of the important components for minimizing the losses due to this pest. Therefore, we evaluated a diverse array of sorghum genotypes to identify physico‐chemical characteristics conferring resistance to A. soccata. Susceptibility to shoot fly was associated with high amounts of soluble sugars, fats, leaf surface wetness and seedling vigour; while leaf glossiness, plumule and leaf sheath pigmentation, trichome density and high tannin, Mg and Zn showed resistance to shoot fly. Stepwise regression indicated that Mg, Zn, soluble sugars, tannins, fats, leaf glossiness, leaf sheath and plumule pigmentation and trichome density explained 99.8% of the variation in shoot fly damage. Path coefficient analysis suggested that leaf glossiness, trichome density, Mg and fat content and plant plumule pigmentation can be used as markers traits to select for shoot fly resistance in sorghum.     

东南诸河流域1990-2015年土地利用时空变化特征及驱动机制

土地利用/覆被变化作为影响全球环境变化的重要因素,是人类活动最直接的反映,其驱动力分析能够很好地揭示人类活动对土地资源的影响机制。运用ArcGIS空间分析和SPSS主成分分析等方法,从整个东南诸河流域片区的尺度上,研究了包含中国台湾地区在内的1990—2015年间的土地利用时空变化特征,并探究其主要驱动机制。研究结果为:(1)全流域各土地类型面积占比为:林地耕地草地城乡建设用地水域未利用土地,林地与耕地的空间分布特征均为"北聚南散,北多南少",城乡建设用地集中分布在经济较为发达的台湾海峡两岸沿海地区以及流域大陆北部靠近长江三角洲的地区。(2)全流域土地类型的面积变化量为:城乡建设用地耕地草地林地水域未利用土地。流域土地利用综合动态度为0.68%,整体用地类型转化程度先降低再增加,并以城乡建设用地和耕地为主要变化类型。流域南部各市的土地利用变化较北部剧烈,台湾地区主要土地利用变化类型为耕地和城乡建设用地。(3)大陆地区城乡建设用地变化的主要驱动力为人口数量及结构、城市化和社会经济发展,台湾地区在此基础上增加了社会工农产业结构调整因素。大陆耕地变化的主要驱动力为人口数量及结构、城市化水平和社会工农产业结构,社会工农产业结构和农业生产水平是台湾地区耕地变化的主要驱动力。本研究为东南诸河流域土地资源规划管理提供科学依据,为自然流域尺度的土地利用变化及其驱动机制研究提供可靠实例。     

Relationships between inhibitory activity against a cancer cell line panel, profiles of plants collected, and compound classes isolated in an anticancer drug discovery project

In an attempt to determine the relationships between the plant profiles (country of collection, taxonomy, plant part) and the compound classes isolated with cytotoxic activity against a panel of human tumor cell lines, the data compiled from a 15-year anticancer drug-discovery project were subjected to an analysis of variance (ANOVA). The results indicate significant trends in cytotoxic activity relative to collection location, taxonomy, plant part, and compound classes isolated. Plant collections were made in tropical forests in six countries, with collections from Ecuador resulting in higher activity than those from Indonesia and Peru. Interestingly, collections from Florida were not statistically different than those from the countries with higher biodiversity. One hundred and forty-five families were represented in the collections, with the Clusiaceae, Elaeocarpaceae, Meliaceae, and Rubiaceae having low ED50 (half maximal effective dose) values. Especially active genera included Aglaia, Casearia, Exostema, Mallotus, and Trichosanthes. Roots and below-ground plant materials were significantly more active than above-ground materials. Cucurbitacins, flavaglines, anthraquinones, fatty acids, tropane alkaloids, lignans, and sesquiterpenoids were significantly more active than xanthones and oligorhamnosides. The results from this study should serve as a guide for future plant collection endeavors for anticancer drug discovery.     

Weed and Crop Allelopathy

Allelopathy can be defined as an important mechanism of plant interference mediated by the addition of plant-produced secondary products to the soil rhizosphere. Allelochemicals are present in all types of plants and tissues and are released into the soil rhizosphere by a variety of mechanisms, including decomposition of residues, volatilization, and root exudation. Allelochemical structures and modes of action are diverse and may offer potential for the development of future herbicides. We have focused our review on a variety of weed and crop species that establish some form of potent allelopathic interference, either with other crops or weeds, in agricultural settings, in the managed landscape, or in naturalized settings. Recent research suggests that allelopathic properties can render one species more invasive to native species and thus potentially detrimental to both agricultural and naturalized settings. In contrast, allelopathic crops offer strong potential for the development of cultivars that are more highly weed suppressive in managed settings. Both environmental and genotypic effects impact allelochemical production and release over time. A new challenge that exists for future plant scientists is to generate additional information on allelochemical mechanisms of release, selectivity and persistence, mode of action, and genetic regulation. In this manner, we can further protect plant biodiversity and enhance weed management strategies in a variety of ecosystems. Referee: Dr. Steve Weller, Purdue University, Dept. of Horticulture, West Lafayette, IN 47907     

Production of antifungal saponins in an airlift bioreactor with a cell line transformed from Solanum chrysotrichum and its activity against strawberry phytopathogens

Abstract

Biotechnology through plant cell cultures in bioreactors is a tool that allows increasing the production of secondary metabolites of commercial interest. The hydrodynamic characterization, in addition to the transfer (OTR) and uptake (OUR) of oxygen through the dynamic method with different aeration rate, were used to see their influence on the production of biomass and saponins. The culture poisoning technique was used to determine the antifungal activity of the SC-2 and SC-3 saponins in vitro. Likewise, the shear or hydrodynamic stress of 273.6?mN/m² were calculated based on the Reynolds Number. The oxygen supply (OTR) was always greater than the demand (OUR) for all the aeration rate evaluated. Dry weight values of 8.6 gDW/L and a concentration of 2.7?mg/L and 187.3?mg/L of the saponins SC-2 and SC-3 respectively were obtained with an air flow of 0.1 vvm. In addition, it was possible to inhibit the growth of phytopathogenic fungi in vitro by up to 93%, while in vivo it was possible to reduce the infections of strawberry seeds inoculated with phytopathogens, obtaining up to 94% of germinated seeds. This information will facilitate the rational operation of the bioreactor culture system that produces secondary metabolites.     

Genus Pseudonocardia: What we know about its biological properties,abilities and current application in biotechnology

The genus Pseudonocardia belongs to a group of Actinomycetes, and is a member of the family Pseudonocardiacea. The members of this genus are aerobic, Gram-positive, non-motile bacteria that are commonly found in soil, plant and environment. Although this genus has a low clinical significance; however, it has an important role in biotechnology due to the production of secondary metabolites, some of which have anti-bacterial, anti-fungal and anti-tumour effects. The use of phenotypic tests, such as gelatinase activity, starch hydrolysis, catalase and oxidase tests, as well as molecular methods, such as polymerase chain reaction, are necessary for Pseudonocardia identification at the genus and species levels.     

Red/ET同源重组技术及其在微生物基因组挖掘中的应用进展

Red/ET同源重组技术(Red/ET recombineering)是由来源于大肠杆菌λ噬菌体的蛋白对Redα/Redβ或来源于Rac原噬菌体的蛋白对Rec E/Rec T所介导的基于短同源臂(40–50 bp)的同源重组技术,能对宿主DNA序列进行快速、高效、精确的修饰和操作。本文主要综述了2010年以来Red/ET同源重组技术在大肠杆菌及其他细菌中的研究进展,同时简要介绍了该技术在微生物基因组挖掘,尤其是在微生物基因簇的异源表达领域的应用进展。     

植物苯丙烷代谢及其对重金属胁迫的响应研究进展

苯丙烷代谢途径是植物中最重要的次生代谢途径之一,在植物抵抗重金属胁迫中直接或间接发挥了抗氧化作用,并能够提高植物对重金属离子的吸收与胁迫耐性。本文就苯丙烷代谢途径核心反应与关键酶系进行了总结,同时分析了木质素、类黄酮及原花青素等关键代谢产物的生物合成过程及相关机制,并以此为基础探讨了苯丙烷代谢途径关键产物响应重金属胁迫的相关机制。此外,结合当前研究现状,就苯丙烷代谢参与植物防御重金属胁迫的相关研究提出展望,以期为重金属污染环境的植物修复提供理论依据。     

新亚欧大陆桥经济走廊土地覆被变化及驱动力分析

针对年际间的土地覆被变化的空间分异特性及驱动机理解析问题,采用Python和R语言构建了土地覆盖变化的时空动态概率模型和驱动力综合分析模型,实现了21世纪以来"新亚欧大陆桥经济走廊(NECBEC)"土地覆盖时空动态变化特征及驱动机理的定量分析。研究结果表明,在2001—2017年间,NECBEC的土地覆盖变化总体呈现出三增(草地、耕地和建设用地分别增加11457万hm~2、841万hm~2和396万hm~2)和三减(林地、水域和湿地、和未利用地分别减少7409万hm~2、4659万hm~2和626万hm~2)趋势。其中,未利用地和林地主要转换为草地,而草地则主要转为林地和耕地。建设用地年际增加幅度最大,其新增面积中耕地贡献达到50%。另外,自2013年"一带一路"倡议启动以来,NECBEC区域的各种土地覆盖类型之间的相互转换幅度呈现明显增加趋势,而NECBEC沿线国家之间的社会经济发展综合水平集聚性总体上呈减弱趋势,其中综合得分高高聚集区和低低聚集区分别集中在西欧和中亚北部。NECBEC区域的社会经济发展对耕地和建设用地的时空差异性尤为显著。土地覆盖类型在面积变化量和变化速率上,均具有明显的时空分异性。不同的经济发展综合水平对LUCC的类型演替、格局变化和驱动效应不同。     

Phenotypic plasticity: linking molecular mechanisms with evolutionary outcomes

We argue that phenotypic plasticity should be broadly construed to encompass a diversity of phenomena spanning several hierarchical levels of organization. Despite seemingly disparate outcomes among different groups of organisms (e.g., the opening/closing of stomata in leaves, adjustments of allocation to growth/reproduction, or the production of different castes in social insects), there are underlying shared processes that initiate these responses. At the most fundamental level, all plastic responses originate at the level of individual cells, which receive and process signals from their environment. The broad variations in physiology, morphology, behavior, etc., that can be produced by a single genotype, can be accounted for by processes regulating gene expression in response to environmental variation. Although evolution of adaptive plasticity may not be possible for some types of environmental signals, in many cases selection has molded responses to environmental variation that generate precise and repeatable patterns of gene expression. We highlight the example of responses of plants to variation in light quality and quantity, mediated via the phytochrome genes. Responses to changes in light at particular stages of plants' life cycles (e.g., seed germination, competition, reproduction) are controlled by different members of this gene family. The mechanistic details of the cell and molecular biology of phytochrome gene action (e.g., their effects on expression of other genes) is outlined. Plasticity of cells and organisms to internal and external environmental signals is pervasive, and represents not just an outcome of evolutionary processes, but also a potentially important molder of them. Phenotypes originally initiated via a plastic response, can be fixed through genetic assimilation as alternate regulatory pathways are shut off. Evolution of mechanisms of plasticity and canalization can both reduce genetic variation, as well as shield it. When the organism encounters novel environmental conditions, this shielded variation may be expressed, revealing hidden reaction norms that represent the raw material for subsequent evolution.     

Proteomics in Alzheimer's disease: insights into potential mechanisms of neurodegeneration

Proteomics involves the identification of unknown proteins following their separation, often using two-dimensional electrophoresis, digestion of particular proteins of interest by trypsin, determination of the molecular weight of the resulting peptides, and database searching to make the identification of the proteins. Application of proteomics to Alzheimer's disease (AD), the major dementing disorder of the elderly, has just begun. Differences in protein expression and post-translational modification (mostly oxidative modification) of proteins from AD brain and peripheral tissue, as well as in brain from rodent models of AD, have yielded insights into potential molecular mechanisms of neurodegeneration in this dementing disorder. This review surveys the proteomics studies relevant to AD, from which new understandings of the pathology, biochemistry, and physiology of AD are beginning to emerge.     

Formation Mechanism and Occurrence Law of Pod Shattering in Soybean: A Review

Seed shattering refers to the phenomenon in which the pods split along the abdominal and back sutures before the crop is received, so that the seeds are spread. Seed shattering is vital to the reproduction of their offspring in wild plants, but it is also the main cause of crop yield loss reason. Pod-explosion resistance is a complex process of physical and physiological and biochemical reactions. Soybean seed shattering phenomenon is widespread, which severely restricts the development of soybean industry. Seed shattering (pod cracking or fruit dropping) is essential for the reproduction of its offspring in wild plants, but it is also the main cause of crop yield loss. This article analyzes the morphology and structure of pods related to seed shattering from the morphology of pods. On the basis of the regularity of the occurrence of seed shattering and the summary of phenotypic index identification methods, physiologically introduced the regulation mechanism of key enzymes and endogenous hormones on seed shattering. The localization, labeling and cloning of seed shattering genes are introduced in molecular biology. The study focused on reviewing the latest advances in the research on soybean seed shattering characteristics, and discussed with the research results of related crops. Finally, the research and application of soybean seed shattering resistance were prospected for several aspects.     

大型真菌子实体发生的形态学过程及调控机制

大型真菌中很多种类具有较高的营养价值和药用价值,而食药用部位多为大型真菌的子实体,所以子实体的形成对大型真菌的开发应用就显得尤为重要。在大型真菌生活史中,子实体的发生揭示着真菌完成了从营养生长向生殖生长的转变。从理论上来说,菌丝体只需完成营养生长,即可进入生殖生长;而实际上,子实体的发生受到各种环境因素、遗传因素等的影响。因此,本文从子实体发生的形态学过程、环境影响因素、分子调控机制等方面综述了近年国内外关于大型真菌子实体发生的研究概况,为大型真菌的系统研究和重要食药用菌的栽培驯化提供理论借鉴和参考依据。     

New trends in peptide-based anti-biofilm strategies: a review of recent achievements and bioinformatic approaches

Antimicrobial peptides (AMPs) have a broad spectrum of activity and unspecific mechanisms of action. Therefore, they are seen as valid alternatives to overcome clinically relevant biofilms and reduce the chance of acquired resistance. This paper reviews AMPs and anti-biofilm AMP-based strategies and discusses ongoing and future work. Recent studies report successful AMP-based prophylactic and therapeutic strategies, several databases catalogue AMP information and analysis tools, and novel bioinformatics tools are supporting AMP discovery and design. However, most AMP studies are performed with planktonic cultures, and most studies on sessile cells test AMPs on growing rather than mature biofilms. Promising preliminary synergistic studies have to be consubstantiated and the study of functionalized coatings with AMPs must be further explored. Standardized operating protocols, to enforce the repeatability and reproducibility of AMP anti-biofilm tests, and automated means of screening and processing the ever-expanding literature are still missing.