Drosophila and vertebrate myb proteins share two conserved regions, one of which functions as a DNA-binding domain

We report the nucleotide sequence of a cDNA clone of the Drosophila melanogaster homologue of c-myb, a member of the class of vertebrate transforming genes encoding nuclear proteins. We predict the mol. wt of the Drosophila myb (D-myb) protein to be 74,000. The D-myb protein contains two clusters of sequences homologous to vertebrate myb proteins, surrounded by sequences lacking homology. These results extend previous evidence for the existence of a D. melanogaster homologue of c-myb and identify two highly conserved and therefore presumably functionally important domains of c-myb proteins. DNA-binding experiments indicate that the NH2-proximal of the two homology regions functions as a DNA-binding domain. Based on the absence of the COOH-proximal homology region in truncated oncogenic derivatives of c-myb it is likely that this homology region encodes a function whose loss is involved in activating the oncogenic potential of c-myb.     

The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development

The functions of the vast majority of genes encoding R2R3 MYB domain proteins remain unknown. The closely related MYB33 and MYB65 genes of Arabidopsis thaliana have high sequence similarity to the barley (Hordeum vulgare) GAMYB gene. T-DNA insertional mutants were isolated for both genes, and a myb33 myb65 double mutant was defective in anther development. In myb33 myb65 anthers, the tapetum undergoes hypertrophy at the pollen mother cell stage, resulting in premeiotic abortion of pollen development. However, myb33 myb65 sterility was conditional, where fertility increased both under higher light or lower temperature conditions. Thus, MYB33/MYB65 facilitate, but are not essential for, anther development. Neither single mutant displayed a phenotype, implying that MYB33 and MYB65 are functionally redundant. Consistent with functional redundancy, promoter-beta-glucuronidase (GUS) fusions of MYB33 and MYB65 gave identical expression patterns in flowers (sepals, style, receptacle, anther filaments, and connective but not in anthers themselves), shoot apices, and root tips. By contrast, expression of a MYB33:GUS translational fusion in flowers was solely in young anthers (consistent with the male sterile phenotype), and no staining was seen in shoot meristems or root tips. A microRNA target sequence is present in the MYB genes, and mutating this sequence in the MYB33:GUS fusion results in an expanded expression pattern, in tissues similar to that observed in the promoter-GUS lines, implying that the microRNA target sequence is restricting MYB33 expression. Arabidopsis transformed with MYB33 containing the mutated microRNA target had dramatic pleiotrophic developmental defects, suggesting that restricting MYB33 expression, especially in the shoot apices, is essential for proper plant development.     

Cloning and expression analysis of a gene that shows developmental regulation upon tuberization in potato

An Arabidopsis cDNA clone encoding a DNA-binding protein, RAP-1, was isolated by southwestern screening of an Escherichia coli cDNA expression library. The protein contains a bHLH DNA-binding domain and is homologous to R proteins, regulating anthocyanin biosynthesis. RAP-1 binds to the sequence CACNTG. It is encoded by a single gene, which is expressed to high levels in root and stem and to low levels in leaf and flower. No expression could be detected in siliques. Rap-1 does not correspond to one of the known loci involved in anthocyanin biosynthesis, since it is located at a different map position. In contrast to the maize R protein Lc, RAP-1 did not induce anthocyanin biosynthesis in pea cotyledons. Thus, RAP-1 is a novel member of the bHLH class of DNA-binding proteins.     

Nucleotide sequence of a gene from Arabidopsis thaliana encoding a myb homologue

A gene encoding a proto-oncogene, a myb-related gene named Atmyb1, was cloned from Arabidopsis thaliana, and its nucleotide sequence was determined. The Atmyb1 gene contains an intron of 494 bp, and there are no highly homologous sequences present in the A. thaliana genome, but evidence was found that other myb-related genes exist. In the 5 flanking region, we found several typical cis-acting elements found in plant promoters. Sequence comparisons revealed that the ATMYB1 protein has a putative DNA-binding domain with two repeats of tryptophan clusters, which is common in MYB-related proteins in plants, while animal MYB-related proteins contain DNA-binding domains with three repeats of tryptophan clusters. The putative DNA-binding domain of the ATMYB1 protein has higher homology with that of the human c-MYB protein than with those of other plant MYB proteins.     

百合转录因子MYB12的克隆与表达分析

以东方百合‘索邦’(Lilium oriental hybrid ‘Sorbonne’)为材料,克隆获得花青素苷生物合成通路中的关键转录因子Lhsor MYB12基因。序列分析结果显示,Lhsor MYB12最大开放阅读框长720 bp,编码239个氨基酸,具有2个典型的DNA结合结构域;该基因包括3个外显子和2个内含子。该基因的氨基酸序列与郁金香(Tulipa fosteriana W. Irving)中的MYB氨基酸序列相似性最高。系统进化分析结果表明,Lhsor MYB12在MYB基因家族中与已报道的控制花青素苷合成的基因形成一簇。进一步采用染色体步移技术,获得了Lhsor MYB12基因起始密码子上游2143 bp的启动子序列,顺式作用元件预测结果显示,该序列中除核心启动子元件(TATA box)外,还包含有MYB蛋白的绑定位点、光反应元件以及参与昼夜节律等反应的相关元件。基因表达分析结果表明,Lhsor MYB12仅在‘索邦’花丝、花柱和花被片中表达;且在花蕾发育过程中表达量逐渐增高,花蕾盛开时表达量最大,但内、外花被的表达起始阶段不同。黑暗处理可导致Lhsor MYB12表达水平降低;光照条件下该基因的表达水平随处理时间的延长表现出先上升后下降再持续上升的趋势。研究结果提示Lhsor MYB12的表达变化规律可能与其启动子中相应的顺式作用元件相关。     

糜子抗旱节水相关基因PmMYB的克隆及表达分析

根据在糜子抗旱节水分子基础研究中获得的一个糜子MYB基因的EST序列, 以其序列及水稻MYB18基因的序列为基础设计引物, 扩增得到1 739 bp的全长基因组序列。序列分析表明, 其包含121 bp(347~467 bp)和93 bp(599~691 bp)的两个内含子, 3个外显子; 全长cDNA序列为1 525 bp, 其中3′非翻译区为212 bp, 5′非翻译区为41 bp, 编码区为1 272 bp, 共编码424个氨基酸, C-端存在一个丝氨酸(Ser, S)丰富区。该基因具有两个典型的MYB类转录因子基因的DNA结合区(DNA-binding domain), 分别为13~63、66~114位氨基酸, 属于典型的R2R3-MYB转录因子。对其与水稻、玉米、火炬松、拟南芥、辣椒、陆地棉、大麦及茄子等9种植物的MYB基因的R2、R3重复区的氨基酸序列多重比较, 表明R2R3重复序列在植物中具有较高的保守性; 基于氨基酸序列的编码区系统进化树分析表明, 不同植物的MYB基因遗传分化很大, 序列相似性为32%~84%, 其中糜子MYB基因与水稻的MYB18相似程度最高(84%), 与大麦和玉米的相似性分别为46%和41%。通过半定量RT-PCR对其表达模式分析表明, 该基因在水分胁迫和干旱后复水条件下上调表达, 与糜子抗旱节水紧密相关。该基因的克隆为进一步探讨利用该基因改良其他植物的抗旱节水性奠定了良好的基础。     

Characterization of the v-myb DNA binding domain.

The transforming protein encoded by the v-myb oncogene is a sequence-specific DNA-binding protein that is thought to be involved in the regulation of gene expression. The N-terminal region of the v-myb protein is composed of two highly conserved tandem repeat sequences of unknown function. It has been speculated that the N-terminal v-myb repeats might be crucial for DNA-binding, since N-terminal deletions destroy the DNA-binding activity of the v-myb protein. Here, we have studied the v-myb DNA-binding domain in more detail. Our results show that the N-terminal region of the v-myb protein is sufficient for specific DNA-binding. Dissection of this region suggests that both repeats are required for DNA-binding, but that both repeats play different roles in v-myb protein DNA interaction. We also show that the myb repeats of a drosophila melanogaster homolog of c-myb function as sequence-specific DNA-binding domain. Our results support the view that specific sequence-recognition, mediated by the conserved myb repeats, is a general feature of myb-related proteins.     

Myb Genes in Ciliates: A Common Origin with the myb Protooncogene?

In animals, the protooncogene myb family is characterized by a DNA-binding domain (so-called MYB domain), which consists of 3 imperfect tandem repeats of a helix-turn-helix motif. Homologous genes have been characterized in plants and also in Dictyostelium discoideum. However, in plants, the myb family is more diverse and displays 2 types of MYB domains: the animal-like 3 repeats (MYB-3R) and the 2 repeats (MYB-2R) domains. The question is therefore raised as to the putative existence of genes with MYB-3R and/or MYB-2R domains in their last common unicellular ancestor. Here, we present evidence that in ciliates like in plants, both types of domain exist. A gene having a MYB-3R domain has been identified in the oxytrichid Sterkiella histriomuscorum and a gene having a MYB-2R domain has been identified in the euplotid Euplotes aediculatus. Both genes are expressed during the vegetative growth of the cells. A conserved intron exists in the gene of Sterkiella and phylogenetical analyses show that the 2 ciliate genes belong to the myb protooncogene family as deeply split lineages. This is the first report of a myb homolog in a ciliated protist, thus, confirming its origin in strict unicellular eukaryotes.