Competitive exclusion and coexistence of pathogens in a homosexually-transmitted disease model

A sexually-transmitted disease model for two strains of pathogen in a one-sex, heterogeneously-mixing population has been studied completely by Jiang and Chai in (J Math Biol 56:373-390, 2008). In this paper, we give a analysis for a SIS STD with two competing strains, where populations are divided into three differential groups based on their susceptibility to two distinct pathogenic strains. We investigate the existence and stability of the boundary equilibria that characterizes competitive exclusion of the two competing strains; we also investigate the existence and stability of the positive coexistence equilibrium, which characterizes the possibility of coexistence of the two strains. We obtain sufficient and necessary conditions for the existence and global stability about these equilibria under some assumptions. We verify that there is a strong connection between the stability of the boundary equilibria and the existence of the coexistence equilibrium, that is, there exists a unique coexistence equilibrium if and only if the boundary equilibria both exist and have the same stability, the coexistence equilibrium is globally stable or unstable if and only if the two boundary equilibria are both unstable or both stable.     

Two predators feeding on two prey species: a result on permanence

For biological populations the precise asymptotic behavior of the corresponding dynamic system is probably less important than the question of extinction and survival of species. An ecological differential equation is called permanent if there exists some level k greater than 0 such that if the number xi(0) of species i at time 0 is positive for i = 1,2, ..., n then xi(t) greater than k for all sufficiently large times t Characterizations for permanence in a four-species prey-predator system modeled by the Lotka-Volterra equation are presented. The method used is based on a combination of two well-known approaches to dealing with permanence. An interesting feature is the occurrence of heteroclinic cycles.     

RF nonlinear interactions in living cells-I: nonequilibrium thermodynamic theory

Some biological experiments report effects that depend on low frequency modulation of a radiofrequency (RF) carrier. Such effects require nonlinear responses in biological preparations, which we show could be observed with great generality by the unique frequency signatures that would appear in the scattered RF energy. Following Illinger [Illinger (1982): Bioelectromagnetics 3:9-16], we considered a two part physical system. The greater part, dominated by the properties of water, interacts linearly with the RF field and is described by equilibrium thermodynamics. However, another, much smaller part, e.g., certain biological molecules and molecular subgroups, supports nonlinear interactions and is described by nonequilibrium thermodynamics. For example, a nonlinear interaction might result from scattering of RF photons from oscillators located in a region of strong field gradients, such as at membrane surfaces. A second nonlinear mechanism could appear if stress (elastic) waves were launched within the confines of the exposure vessel by RF heating. Amplitude modulation at angular frequency Omega of a carrier wave with angular frequency omega (omega < omega) produces two peaks in elastic stress in the cell structure during each period; that is, there is "full-wave demodulation." As a result of coherent nonlinear charge motion, modulation products could appear at frequencies omega +/- 2 omega and, in general, at omega +/- n 2 omega (n = 1, 2, em leader ) if vibrational harmonics at 2 n omega also are excited. Although in principle microwaves can alter the stability of a thermodynamic system by pumping a chemical transition, the degree of nonlinear coupling required for an observable instability is so great that its probability is effectively zero, unless field intensity is extremely high. A companion paper suggests an extremely sensitive method and the related instrumentation for detection of the spectrum scattered by living cells during exposure to amplitude modulated RF energy.     

Direct Evaluation of Vapour-Liquid Equilibria of Mixtures by Molecular Dynamics Using Gibbs-Duhem Integration

Abstract

We present an extension of the Gibbs-Duhem integration method that permits direct evaluation of vapour-liquid equilibria of mixtures by molecular dynamics. The Gibbs-Duhem integration combines the best elements of the Gibbs ensemble Monte Carlo technique and thermodynamic integration. Given conditions of coexistence of pure substances, simultaneous but independent molecular dynamics simulations of each phase at constant number of particles, constant pressure, constant temperature and constant fugacity fraction of species 2 are carried out in succession along coexistence lines. In each simulation, the coexistence pressure is adjusted to satisfy the Clapeyron-type equation. The Clapeyron-type equation is a first-order nonlinear differential equation that prescribes how the pressure must change with the fugacity fraction of species 2 to maintain coexistence at constant temperature. The Clapeyron-type equation is solved by the predictor-corrector method. Running averages of mole fraction and compressibility factor for the two phases are used to evaluate the right-hand side of the Clapeyron-type equation. The Gibbs-Duhem integration method is applied to three prototypes of binary mixtures of the two-centre Lennard-Jones fluid having various elongations. The starting points on the coexistence curve were taken from published data.     

具不同生存能力竞争模型中的二点环

本文研究了一类具有不同生存能力竞争效应的差分方程生态模型中的同步二点周期环现象．结果表明,当存活率为密度制约时,除始终存在唯一的一个正奇点外,还同时存在唯一的一个同步二点周期环,其稳定性正好与这一正奇点的性态相反．     

Theory of transport in linear biological systems: II. Multiflux problems

If in a multiflux system theith flux is given by the integral equation, , the corresponding equation in the Laplace transforms is Γ _i = Σ _j W _ij Γ _j +M _i -the entire system having the matrix formulaion, [I−W]Γ=M. The general solution of this equation and its physical interpretation are discussed. Explicit solutions are given for the general mammillary and catenary systems and for some capillary exchange problems. The theory is applied to the integrated from of the fundamental continuity equation to give equations for total quantity of material in the various “compartments.” If the compartments are uniformly mixed, the integral equation treatment is shown to be mathematically equivalent to the usual differential equation formulation.     

Coexistence under positive frequency dependence

Negative frequency dependence resulting from interspecific interactions is considered a driving force in allowing the coexistence of competitors. While interactions between species and genotypes can also result in positive frequency dependence, positive frequency dependence has usually been credited with hastening the extinction of rare types and is not thought to contribute to coexistence. In the present paper, we develop a stochastic cellular automata model that allows us to vary the scale of frequency dependence and the scale of dispersal. The results of this model indicate that positive frequency dependence will allow the coexistence of two species at a greater rate than would be expected from chance. This coexistence arises from the generation of banding patterns that will be stable over long time-periods. As a result, we found that positive frequency-dependent interactions over local spatial scales promote coexistence over neutral interactions. This result was robust to variation in boundary conditions within the simulation and to variation in levels of disturbance. Under all conditions, coexistence is enhanced as the strength of positive frequency-dependent interactions is increased.     

Transport across homoporous and heteroporous membranes in nonideal, nondilute solutions. II. Inequality of phenomenological and tracer solute permeabilities.

The phenomenological solute permeability (omega p) of a membrane measures the flux of solute across it when the concentrations of the solutions on the two sides of the membrane differ. The relationship between omega p and the the conventionally measured tracer permeability (omega T) is examined for homoporous and heteroporous (parallel path) membranes in nonideal, nondilute solutions and in the presence of boundary layers. In general, omega p and omega T are not equal; therefore, predictions of transmembrane solute flux based on omega T are always subject to error. For a homoporous membrane, the two permeabilities become equal as the solutions become ideal and dilute. For heteroporous membranes, omega p is always greater than omega T. An upper bound on omega p- omega T is derived to provide an estimate of the maximum error in predicted solute flux. This bound is also used to show that the difference between omega P and omega T demonstrated earlier for the sucrose-Cuprophan system can be explained if the membrane is heteroporous. The expressions for omega P developed here support the use of a modified osmotic driving force to describe membrane transport in nonideal, nondilute solutions.     

Positive Darwinian selection on crustacean hyperglycemic hormone (CHH) of the green shore crab, Carcinus maenas

The tissue-specific expression and differential function of the crustacean hyperglycemic hormone (CHH) in Carcinus maenas indicate an interesting evolutionary history. Previous studies have shown that CHH from the sinus gland X-organ (XO-type) has hyperglycemic activity, whereas the CHH from the pericardial organ (PO-type) neither shows hyperglycemic activity nor it inhibits Y-organ ecdysteroid synthesis. Here we examined the types of selective pressures operating on the variants of CHH in Carcinus maenas. Maximum likelihood-based codon substitution analyses revealed that the variants of this neuropeptide in C. maenas have been subjected to positive Darwinian selection indicating adaptive evolution and functional divergence among the CHH variants leading to two unique groups (PO and XO-type). Although the average ratio of nonsynonymous to synonymous substitution (omega) for the entire coding region is 0.5096, few codon sites showed significantly higher omega (10.95). Comparison of models that incorporate positive selection (omega > 1) with models not incorporating positive selection (omega <1) at certain codon sites failed to reject (p=0) evidence of positive Darwinian selection.     

Persistence of predator-prey systems in an uncertain environment

Summary The time derivatives of prey and predator populations are assumed to satisfy a set of inequalities, instead of a precise differential equation, reflecting an uncertain environmental and/or lack of knowledge by the modeler. A system of differential equations is found whose solution gives the boundary of a persistent set, which is positive flow invariant for any system satisfying the inequalities. Conditions are given for the persistent set to be bounded away from both axes, which show that resonance effects cannot drive either predator or prey to extinction if that does not happen for an autonomous system satisfying the inequalities. In general predator-prey systems are more persistent when there is strong asymptotic stability, when there is correlation between prey and predator dynamics, when the effect of perturbations is density dependent, and are more persistent under perturbations of the prey than of the predator.     

有毒物影响和Beddington-DeAngelis型功能性反应的捕食系统的全局吸引性

利用微分方程比较原理,重合度理论中Mawhin’s延拓定理,Lya．punov泛函和Barbalat引理,研究了一类有毒物影响和Beddington—DeAngelis型功能性反应的时滞两种群捕食者-食饵系统．我们得到了该系统一致持久性和其周期系统存在唯一全局渐近稳定的周期解的充分条件．改进了范猛和唐贵坚的相关结果．     

Persistence in fluctuating environments

Understanding under what conditions interacting populations, whether they be plants, animals, or viral particles, coexist is a question of theoretical and practical importance in population biology. Both biotic interactions and environmental fluctuations are key factors that can facilitate or disrupt coexistence. To better understand this interplay between these deterministic and stochastic forces, we develop a mathematical theory extending the nonlinear theory of permanence for deterministic systems to stochastic difference and differential equations. Our condition for coexistence requires that there is a fixed set of weights associated with the interacting populations and this weighted combination of populations’ invasion rates is positive for any (ergodic) stationary distribution associated with a subcollection of populations. Here, an invasion rate corresponds to an average per-capita growth rate along a stationary distribution. When this condition holds and there is sufficient noise in the system, we show that the populations approach a unique positive stationary distribution. Moreover, we show that our coexistence criterion is robust to small perturbations of the model functions. Using this theory, we illustrate that (i) environmental noise enhances or inhibits coexistence in communities with rock-paper-scissor dynamics depending on correlations between interspecific demographic rates, (ii) stochastic variation in mortality rates has no effect on the coexistence criteria for discrete-time Lotka–Volterra communities, and (iii) random forcing can promote genetic diversity in the presence of exploitative interactions.

One day is fine, the next is black.—The Clash     

Competitive exclusion and limiting similarity: a unified theory

Robustness of coexistence against changes of parameters is investigated in a model-independent manner by analyzing the feedback loop of population regulation. We define coexistence as a fixed point of the community dynamics with no population having zero size. It is demonstrated that the parameter range allowing coexistence shrinks and disappears when the Jacobian of the dynamics decreases to zero. A general notion of regulating factors/variables is introduced. For each population, its impact and sensitivity niches are defined as the differential impact on, and the differential sensitivity towards, the regulating variables, respectively. Either the similarity of the impact niches or the similarity of the sensitivity niches results in a small Jacobian and in a reduced likelihood of coexistence. For the case of a resource continuum, this result reduces to the usual "limited niche overlap" picture for both kinds of niche. As an extension of these ideas to the coexistence of infinitely many species, we demonstrate that Roughgarden's example for coexistence of a continuum of populations is structurally unstable.     

Modelling inert gas exchange in tissue and mixed-venous blood return to the lungs

Inert gas exchange in tissue has been almost exclusively modelled by using an ordinary differential equation. The mathematical model that is used to derive this ordinary differential equation assumes that the partial pressure of an inert gas (which is proportional to the content of that gas) is a function only of time. This mathematical model does not allow for spatial variations in inert gas partial pressure. This model is also dependent only on the ratio of blood flow to tissue volume, and so does not take account of the shape of the body compartment or of the density of the capillaries that supply blood to this tissue. The partial pressure of a given inert gas in mixed-venous blood flowing back to the lungs is calculated from this ordinary differential equation. In this study, we write down the partial differential equations that allow for spatial as well as temporal variations in inert gas partial pressure in tissue. We then solve these partial differential equations and compare them to the solution of the ordinary differential equations described above. It is found that the solution of the ordinary differential equation is very different from the solution of the partial differential equation, and so the ordinary differential equation should not be used if an accurate calculation of inert gas transport to tissue is required. Further, the solution of the PDE is dependent on the shape of the body compartment and on the density of the capillaries that supply blood to this tissue. As a result, techniques that are based on the ordinary differential equation to calculate the mixed-venous blood partial pressure may be in error.     

Convergence of genotypic frequencies for differential selfing and positive assortative mating at a biallelic locus

For a biallelic model of differential self-fertilization and differential positive assortative mating based on genotype, it is shown that the genotypic frequencies converge for all sets of mating system parameters. Overdominance and underdominance with respect to the parameters are necessary but not sufficient conditions for global convergence to a polymorphic equilibrium and local attractiveness of both the fixation states, respectively. There are cases of overdominance and underdominance for which one fixation state is globally attractive. The relationship of the result to those known from the classical viability selection model are briefly discussed. For the multiallelic version, it is shown that after the first generation all of the homozygote frequencies are always in excess of the corresponding Hardy-Weinberg proportions if at least one homozygote rate of self-fertilization or assortment probability is positive.     

Bionomics dynamic model of a class of competition systems ☆

Differential equation problem is an important research topic in the international academia. In accordance with certain ecological phenomena, previous research was conducted based on simple observational and statistical data. But this approach does not effectively study the essence of the ecological phenomena. Recently, one dynamic approach has been proposed for the study of ecology in the international academia. According to this approach, first of all, the ecology is reduced to the differential equation model which represents the essential phenomenon, and then the dynamic law and rules of mathematics and biology will be studied. Currently, an extensive research is conducted on the differential equation problem. This paper primarily explores a type of competitive ecological model, which is a system of differential equation with infinite integral. we first study the existence of positive periodic solution to this model, and then present sufficient conditions for the global attractivity of positive periodic solutions.     

含扩散和时滞的偏微分方程解的振动性

研究一类含扩散和时滞的偏微分方程解的振动性,利用平均法,通过使用偏泛函微分方程上、下解思想和泛函微分方程振动性理论,获得了其解的非负性和关于正平衡态振动的充分条件．     

一类自催化反应扩散模型正解的唯一性与稳定性

主要考虑了一类三分子自催化反应扩散系统．在齐次Dirichlet和Robin边界条件下,当反应率c适当小,系统没有共存态;当c适当大,系统至少有一个共存态;当c充分大,系统有唯一渐近稳定的共存态．特别地,在一维空间上共存态是唯一的．在齐次Neumann边界条件下系统是一个简单系统．     

Backward bifurcation and oscillations in a nested immuno-eco-epidemiological model

This paper introduces a novel partial differential equation immuno-eco-epidemiological model of competition in which one species is affected by a disease while another can compete with it directly and by lowering the first species' immune response to the infection, a mode of competition termed stress-induced competition. When the disease is chronic, and the within-host dynamics are rapid, we reduce the partial differential equation model (PDE) to a three-dimensional ordinary differential equation (ODE) model. The ODE model exhibits backward bifurcation and sustained oscillations caused by the stress-induced competition. Furthermore, the ODE model, although not a special case of the PDE model, is useful for detecting backward bifurcation and oscillations in the PDE model. Backward bifurcation related to stress-induced competition allows the second species to persist for values of its invasion number below one. Furthermore, stress-induced competition leads to destabilization of the coexistence equilibrium and sustained oscillations in the PDE model. We suggest that complex systems such as this one may be studied by appropriately designed simple ODE models.     

The coevolution of two phytoplankton species on a single resource: Allelopathy as a pseudo-mixotrophy

Without the top-down effects and the external/physical forcing, a stable coexistence of two phytoplankton species under a single resource is impossible — a result well known from the principle of competitive exclusion. Here I demonstrate by analysis of a mathematical model that such a stable coexistence in a homogeneous media without any external factor would be possible, at least theoretically, provided (i) one of the two species is toxin producing thereby has an allelopathic effect on the other, and (ii) the allelopathic effect exceeds a critical level. The threshold level of allelopathy required for the coexistence has been derived analytically in terms of the parameters associated with the resource competition and the nutrient recycling. That the extra mortality of a competitor driven by allelopathy of a toxic species gives a positive feed back to the algal growth process through the recycling is explained. And that this positive feed back plays a pivotal role in reducing competition pressures and helping species succession in the two-species model is demonstrated. Based on these specific coexistence results, I introduce and explain theoretically the allelopathic effect of a toxic species as a ‘pseudo-mixotrophy’—a mechanism of ‘if you cannot beat them or eat them, just kill them by chemical weapons’. The impact of this mechanism of species succession by pseudo-mixotrophy in the form of alleopathy is discussed in the context of current understanding on straight mixotrophy and resource-species relationship among phytoplankton species.